Note: Insertion ids mentioned in this report are for internal use (not linked to any database) and will change if the pipeline is re-run.
Note: A “unique” insertion is the merged result after the allele-aware merging from both callers for each patient, and then merged across patients. If we were working with SNPs, a “unique” SNP would be, rs123, for example, defined by its position and alternative(s) allele(s). A unique insertion is defined by its position, length, and inserted sequence.
The analysis has identified:
The stringent criterion (both callers) has left:
146 unique insertions that passed the stringent filtering. (7.1% of the total unique insertions), had at least one occurrence genotyped as 0/0.
These amount to 197 total count (5.0% of filter-passing occurrences).
103 of these unique insertions were genotyped as 0/0 for all their occurrences, amounting to 154 insertion counts.
Of these fully wrong calls, 52 were only found on a single patient each (50.5% of the 103).
The strict criteria missed calls for 77 unique insertions (3.7%).
These mean a total of 77 occurrences, out of 3 930 calls that passed the stringent filter.
77 unique insertions had more false negative occurrences than positive ones.
The discrepancies between genotyping and the lax filtering is also summarized in the table below.
Criterion | Unique INS with false positives (%) | Total false positives (%) | Unique INS (total) with all false positives | Unique INS with false negatives (%) | Total false negatives (Total positives) | Unique INS with more false negatives than positives |
|---|---|---|---|---|---|---|
Strict | 146 | 197 | 103 | 77 | 77 | 77 |
Lax | 353 | 465 | 289 | 0 | 0 | 0 |
The next sections only take into account insertions that passed the strict criterion on at least one sample, and that were not genotyped as 0/0 on all samples.
568 TE insertions were found on all cases in homozygosis.
Position | Length | Type | AF |
|---|---|---|---|
CP068277.2:6 326 450 | 176 | SINE (AluYb8) | 1 |
CP068277.2:20 992 774 | 315 | SINE (AluYa5) | 1 |
CP068277.2:37 641 313 | 47 | Retroposon (SVA_F) | 1 |
CP068277.2:42 148 108 | 312 | SINE (AluYa5) | 1 |
CP068277.2:46 119 444 | 47 | Retroposon (SVA_F) | 1 |
CP068277.2:48 071 779 | 170 | Retroposon (SVA_A) | 1 |
CP068277.2:65 547 882 | 321 | SINE (AluY) | 1 |
CP068277.2:78 774 660 | 319 | SINE (AluYi6) | 1 |
CP068277.2:79 487 048 | 317 | SINE (AluYa5) | 1 |
CP068277.2:80 540 755 | 65 | LINE (L1P2) | 1 |
CP068277.2:81 683 953 | 322 | SINE (AluYb8) | 1 |
CP068277.2:97 099 968 | 324 | SINE (AluYk3) | 1 |
CP068277.2:104 553 877 | 318 | SINE (AluYa5) | 1 |
CP068277.2:111 310 361 | 61 | LINE (L1P3) | 1 |
CP068277.2:115 265 714 | 279 | SINE (AluYa5) | 1 |
CP068277.2:117 439 865 | 79 | Retroposon (SVA_A) | 1 |
CP068277.2:149 905 532 | 87 | Retroposon (SVA_A) | 1 |
CP068277.2:160 560 569 | 359 | Retroposon (SVA_A) | 1 |
CP068277.2:166 450 102 | 62 | LTR (MLT1C2) | 1 |
CP068277.2:168 747 175 | 42 | LTR (PABL_A) | 1 |
CP068277.2:178 877 824 | 352 | SINE (AluYb9) | 1 |
CP068277.2:180 243 610 | 320 | SINE (AluYa5) | 1 |
CP068277.2:190 958 084 | 324 | SINE (AluYa5) | 1 |
CP068277.2:192 243 097 | 39 | LTR (LTR12D) | 1 |
CP068277.2:194 052 174 | 328 | SINE (AluYa5) | 1 |
CP068277.2:199 161 462 | 45 | Retroposon (SVA_F) | 1 |
CP068277.2:205 230 886 | 313 | SINE (AluYa5) | 1 |
CP068277.2:211 436 465 | 39 | Retroposon (SVA_E) | 1 |
CP068277.2:211 713 734 | 84 | SINE (AluSx) | 1 |
CP068277.2:216 822 048 | 301 | SINE (AluYb9) | 1 |
CP068277.2:221 931 096 | 328 | SINE (AluYb8) | 1 |
CP068277.2:244 330 607 | 115 | SINE (AluYa5) | 1 |
CP068276.2:1 198 288 | 306 | SINE (AluY) | 1 |
CP068276.2:1 468 423 | 329 | SINE (AluY) | 1 |
CP068276.2:10 932 624 | 145 | Retroposon (SVA_F) | 1 |
CP068276.2:13 196 975 | 46 | LTR (HERVH-int) | 1 |
CP068276.2:13 955 735 | 74 | LTR (MER57-int) | 1 |
CP068276.2:20 500 541 | 307 | SINE (AluYa5) | 1 |
CP068276.2:34 814 746 | 241 | SINE (AluYa5) | 1 |
CP068276.2:42 610 850 | 302 | Retroposon (SVA_F) | 1 |
CP068276.2:44 604 010 | 316 | SINE (AluYa5) | 1 |
CP068276.2:46 682 545 | 49 | SINE (Alu) | 1 |
CP068276.2:50 018 018 | 132 | SINE (AluSc8) | 1 |
CP068276.2:54 440 636 | 320 | SINE (AluY) | 1 |
CP068276.2:54 460 543 | 248 | SINE (AluY) | 1 |
CP068276.2:65 116 309 | 304 | SINE (AluYc) | 1 |
CP068276.2:76 039 744 | 233 | SINE (AluYb8) | 1 |
CP068276.2:80 542 014 | 269 | SINE (AluYa5) | 1 |
CP068276.2:99 438 516 | 45 | LINE (L1P1) | 1 |
CP068276.2:100 904 185 | 61 | LINE (L1MD) | 1 |
CP068276.2:102 198 725 | 315 | SINE (AluYa5) | 1 |
CP068276.2:106 297 452 | 316 | SINE (AluYe5) | 1 |
CP068276.2:107 771 785 | 320 | SINE (AluYa5) | 1 |
CP068276.2:111 709 562 | 329 | SINE (AluYa5) | 1 |
CP068276.2:123 569 366 | 133 | SINE (AluSp) | 1 |
CP068276.2:123 667 376 | 330 | SINE (AluYb8) | 1 |
CP068276.2:133 554 576 | 319 | SINE (AluY) | 1 |
CP068276.2:137 865 383 | 60 | SINE (AluYb8) | 1 |
CP068276.2:169 505 778 | 321 | SINE (AluYb8) | 1 |
CP068276.2:170 052 490 | 47 | Retroposon (SVA_F) | 1 |
CP068276.2:173 773 579 | 311 | SINE (AluYa5) | 1 |
CP068276.2:174 574 715 | 172 | Retroposon (SVA_A) | 1 |
CP068276.2:174 574 791 | 174 | Retroposon (SVA_A) | 1 |
CP068276.2:174 575 385 | 40 | Retroposon (SVA_F) | 1 |
CP068276.2:175 359 957 | 318 | SINE (AluYa5) | 1 |
CP068276.2:177 936 293 | 333 | SINE (AluYb8) | 1 |
CP068276.2:177 969 023 | 340 | SINE (AluYb8) | 1 |
CP068276.2:184 038 383 | 33 | LINE (L1P4) | 1 |
CP068276.2:191 887 362 | 477 | Retroposon (SVA_F) | 1 |
CP068276.2:192 183 561 | 317 | SINE (AluY) | 1 |
CP068276.2:192 186 024 | 322 | SINE (AluYa5) | 1 |
CP068276.2:198 382 298 | 311 | SINE (AluYa5) | 1 |
CP068276.2:198 513 690 | 137 | SINE (AluSg) | 1 |
CP068276.2:200 963 887 | 44 | SINE (FRAM) | 1 |
CP068276.2:201 167 229 | 46 | Retroposon (SVA_F) | 1 |
CP068276.2:215 319 683 | 76 | Retroposon (SVA_F) | 1 |
CP068276.2:215 369 783 | 157 | SINE (AluYb9) | 1 |
CP068276.2:216 169 155 | 326 | SINE (AluYb8) | 1 |
CP068276.2:216 174 633 | 132 | SINE (AluJo) | 1 |
CP068276.2:217 798 533 | 304 | SINE (AluYb8) | 1 |
CP068276.2:241 341 649 | 103 | LTR (LTR10F) | 1 |
CP068275.2:2 584 962 | 314 | SINE (AluYa5) | 1 |
CP068275.2:12 308 635 | 308 | SINE (AluYa5) | 1 |
CP068275.2:17 692 738 | 322 | SINE (AluYa5) | 1 |
CP068275.2:17 706 756 | 146 | Retroposon (SVA_F) | 1 |
CP068275.2:20 459 977 | 66 | LTR (LTR25-int) | 1 |
CP068275.2:25 252 739 | 71 | LINE (L1M2) | 1 |
CP068275.2:28 128 297 | 324 | SINE (AluYb8) | 1 |
CP068275.2:29 581 547 | 321 | SINE (AluYb8) | 1 |
CP068275.2:32 376 221 | 148 | SINE (AluJb) | 1 |
CP068275.2:32 897 377 | 95 | LINE (L1M4) | 1 |
CP068275.2:49 529 100 | 37 | SINE (Alu) | 1 |
CP068275.2:50 871 697 | 331 | SINE (AluY) | 1 |
CP068275.2:51 280 054 | 77 | Retroposon (SVA_D) | 1 |
CP068275.2:58 327 251 | 43 | Retroposon (SVA_B) | 1 |
CP068275.2:65 941 604 | 35 | LINE (L1PA6) | 1 |
CP068275.2:66 961 938 | 131 | LINE (L1P3) | 1 |
CP068275.2:67 489 000 | 97 | Retroposon (SVA_F) | 1 |
CP068275.2:82 376 966 | 107 | LTR (MER4E1) | 1 |
CP068275.2:87 545 867 | 279 | SINE (AluYa5) | 1 |
CP068275.2:98 099 916 | 327 | SINE (AluYb8) | 1 |
CP068275.2:114 926 706 | 49 | LINE (L1P3) | 1 |
CP068275.2:124 033 267 | 47 | Retroposon (SVA_F) | 1 |
CP068275.2:132 084 525 | 47 | Retroposon (SVA_F) | 1 |
CP068275.2:132 210 422 | 306 | SINE (AluYb8) | 1 |
CP068275.2:136 876 080 | 57 | LINE (L1MCa) | 1 |
CP068275.2:146 222 567 | 314 | SINE (AluYa5) | 1 |
CP068275.2:152 911 714 | 303 | SINE (AluY) | 1 |
CP068275.2:169 427 751 | 340 | SINE (AluYa5) | 1 |
CP068275.2:169 455 669 | 312 | SINE (AluY) | 1 |
CP068275.2:174 782 688 | 118 | LTR (LTR12C) | 1 |
CP068275.2:177 480 228 | 321 | SINE (AluYb8) | 1 |
CP068275.2:181 196 484 | 329 | SINE (AluYb8) | 1 |
CP068275.2:189 692 114 | 77 | Retroposon (SVA_F) | 1 |
CP068274.2:544 007 | 160 | Retroposon (SVA_D) | 1 |
CP068274.2:1 306 582 | 317 | SINE (AluYk2) | 1 |
CP068274.2:1 318 269 | 132 | SINE (AluJb) | 1 |
CP068274.2:2 760 310 | 75 | LINE (L2b) | 1 |
CP068274.2:4 327 276 | 132 | LINE (L1MB3) | 1 |
CP068274.2:8 373 198 | 159 | SINE (AluSc8) | 1 |
CP068274.2:9 950 437 | 246 | SINE (AluY) | 1 |
CP068274.2:9 954 701 | 315 | SINE (AluY) | 1 |
CP068274.2:31 814 716 | 308 | SINE (AluYg6) | 1 |
CP068274.2:38 777 883 | 75 | Retroposon (SVA_B) | 1 |
CP068274.2:38 778 074 | 180 | Retroposon (SVA_F) | 1 |
CP068274.2:40 044 378 | 36 | SINE (AluSx4) | 1 |
CP068274.2:45 425 666 | 39 | LTR (LTR12E) | 1 |
CP068274.2:47 461 846 | 314 | SINE (AluYb8) | 1 |
CP068274.2:47 509 431 | 333 | SINE (AluY) | 1 |
CP068274.2:56 743 495 | 35 | Retroposon (SVA_A) | 1 |
CP068274.2:58 620 850 | 323 | SINE (AluYb8) | 1 |
CP068274.2:59 545 987 | 195 | SINE (AluYc) | 1 |
CP068274.2:70 824 821 | 73 | Retroposon (SVA_A) | 1 |
CP068274.2:73 581 961 | 186 | LINE (L1PA2) | 1 |
CP068274.2:85 588 188 | 303 | SINE (AluY) | 1 |
CP068274.2:88 719 288 | 308 | SINE (AluYa5) | 1 |
CP068274.2:88 913 506 | 72 | LINE (L1HS) | 1 |
CP068274.2:89 207 100 | 34 | SINE (Alu) | 1 |
CP068274.2:98 264 406 | 317 | SINE (AluYb8) | 1 |
CP068274.2:107 135 388 | 303 | SINE (AluYa5) | 1 |
CP068274.2:109 710 152 | 63 | LINE (L1M4c) | 1 |
CP068274.2:119 633 332 | 317 | SINE (AluYa5) | 1 |
CP068274.2:122 158 905 | 317 | SINE (AluYa5) | 1 |
CP068274.2:123 965 285 | 325 | SINE (AluYb8) | 1 |
CP068274.2:124 831 133 | 180 | SINE (AluYc) | 1 |
CP068274.2:137 323 693 | 306 | SINE (AluY) | 1 |
CP068274.2:137 531 575 | 327 | SINE (AluYe5) | 1 |
CP068274.2:145 008 457 | 48 | LTR (THE1D) | 1 |
CP068274.2:153 984 117 | 97 | Retroposon (SVA_F) | 1 |
CP068274.2:154 329 485 | 40 | SINE (Alu) | 1 |
CP068274.2:154 538 658 | 126 | Retroposon (SVA_F) | 1 |
CP068274.2:166 928 648 | 314 | SINE (AluYb8) | 1 |
CP068274.2:168 367 484 | 122 | Retroposon (SVA_F) | 1 |
CP068274.2:168 367 843 | 39 | Retroposon (SVA_C) | 1 |
CP068274.2:171 244 192 | 111 | LTR (MER4A) | 1 |
CP068274.2:173 524 232 | 36 | Retroposon (SVA_D) | 1 |
CP068274.2:173 865 119 | 316 | SINE (AluYb8) | 1 |
CP068274.2:177 630 266 | 311 | SINE (AluYe5) | 1 |
CP068274.2:184 287 164 | 225 | Retroposon (SVA_F) | 1 |
CP068274.2:186 157 093 | 179 | LTR (HERVH-int) | 1 |
CP068274.2:186 384 593 | 39 | Retroposon (SVA_C) | 1 |
CP068274.2:191 741 144 | 315 | SINE (AluY) | 1 |
CP068274.2:192 864 879 | 151 | LINE (L1M4) | 1 |
CP068273.2:1 499 358 | 314 | SINE (AluY) | 1 |
CP068273.2:1 857 114 | 310 | SINE (AluYb8) | 1 |
CP068273.2:4 000 765 | 319 | SINE (AluYa5) | 1 |
CP068273.2:16 635 829 | 43 | SINE (Alu) | 1 |
CP068273.2:16 655 697 | 310 | SINE (AluYg6) | 1 |
CP068273.2:24 017 957 | 285 | SINE (AluY) | 1 |
CP068273.2:25 758 140 | 221 | LINE (L1P1) | 1 |
CP068273.2:34 235 086 | 321 | SINE (AluYa5) | 1 |
CP068273.2:38 033 737 | 92 | LTR (Harlequin-int) | 1 |
CP068273.2:46 415 440 | 333 | SINE (AluY) | 1 |
CP068273.2:63 640 729 | 57 | LINE (L1P1) | 1 |
CP068273.2:66 799 023 | 345 | Retroposon (SVA_F) | 1 |
CP068273.2:77 294 344 | 48 | Retroposon (SVA_F) | 1 |
CP068273.2:78 760 230 | 285 | SINE (AluYa5) | 1 |
CP068273.2:98 972 628 | 23 | LTR (LTR12D) | 1 |
CP068273.2:103 260 583 | 40 | LTR (LTR12E) | 1 |
CP068273.2:114 448 514 | 78 | LTR (LTR62) | 1 |
CP068273.2:118 013 084 | 308 | SINE (AluY) | 1 |
CP068273.2:121 495 295 | 313 | SINE (AluYa5) | 1 |
CP068273.2:125 897 920 | 320 | SINE (AluY) | 1 |
CP068273.2:133 628 749 | 50 | Retroposon (SVA_F) | 1 |
CP068273.2:134 951 038 | 300 | SINE (AluYa5) | 1 |
CP068273.2:138 669 937 | 65 | LTR (LTR12) | 1 |
CP068273.2:139 924 858 | 295 | SINE (AluSx) | 1 |
CP068273.2:147 656 992 | 41 | LINE (L1M2) | 1 |
CP068273.2:150 072 540 | 323 | SINE (AluYa5) | 1 |
CP068273.2:159 694 188 | 322 | SINE (AluYa5) | 1 |
CP068273.2:159 818 649 | 314 | SINE (AluYa5) | 1 |
CP068273.2:163 339 537 | 314 | SINE (AluY) | 1 |
CP068273.2:180 746 045 | 172 | SINE (AluY) | 1 |
CP068273.2:181 314 056 | 266 | LINE (L1P1) | 1 |
CP068272.2:7 310 938 | 81 | LTR (LTR12D) | 1 |
CP068272.2:8 944 499 | 317 | SINE (AluYg6) | 1 |
CP068272.2:9 939 215 | 312 | SINE (AluYa5) | 1 |
CP068272.2:10 902 109 | 135 | SINE (AluSz) | 1 |
CP068272.2:13 394 505 | 329 | SINE (AluYb8) | 1 |
CP068272.2:18 218 651 | 309 | SINE (AluYa5) | 1 |
CP068272.2:19 027 502 | 323 | SINE (AluYb9) | 1 |
CP068272.2:19 295 205 | 236 | SINE (AluYa5) | 1 |
CP068272.2:21 225 613 | 78 | SINE (AluYb8) | 1 |
CP068272.2:28 879 239 | 100 | SINE (AluYi6) | 1 |
CP068272.2:30 339 365 | 38 | Retroposon (SVA_C) | 1 |
CP068272.2:30 680 491 | 159 | LTR (LTR12C) | 1 |
CP068272.2:32 628 076 | 314 | SINE (AluYa5) | 1 |
CP068272.2:38 788 684 | 46 | Retroposon (SVA_F) | 1 |
CP068272.2:41 265 665 | 320 | SINE (AluYf1) | 1 |
CP068272.2:43 757 249 | 316 | SINE (AluYa5) | 1 |
CP068272.2:53 584 806 | 282 | SINE (AluY) | 1 |
CP068272.2:62 724 632 | 132 | SINE (AluSp) | 1 |
CP068272.2:74 701 972 | 42 | SINE (Alu) | 1 |
CP068272.2:74 838 887 | 38 | Retroposon (SVA_B) | 1 |
CP068272.2:76 425 221 | 316 | SINE (AluYa5) | 1 |
CP068272.2:76 483 634 | 49 | SINE (Alu) | 1 |
CP068272.2:82 796 743 | 321 | SINE (AluY) | 1 |
CP068272.2:83 853 159 | 57 | LINE (L1P1) | 1 |
CP068272.2:84 185 928 | 312 | SINE (AluYa5) | 1 |
CP068272.2:86 651 704 | 331 | SINE (AluY) | 1 |
CP068272.2:97 741 692 | 322 | SINE (AluYb8) | 1 |
CP068272.2:103 685 614 | 315 | SINE (AluYa5) | 1 |
CP068272.2:105 950 363 | 311 | SINE (AluY) | 1 |
CP068272.2:107 085 594 | 53 | DNA (MER58A) | 1 |
CP068272.2:109 208 497 | 105 | SINE (AluJb) | 1 |
CP068272.2:115 951 897 | 105 | SINE (AluSc) | 1 |
CP068272.2:123 028 931 | 102 | LINE (L2a) | 1 |
CP068272.2:124 036 735 | 127 | Retroposon (SVA_F) | 1 |
CP068272.2:126 080 527 | 40 | LTR (LTR12C) | 1 |
CP068272.2:137 339 890 | 70 | SINE (AluSg) | 1 |
CP068272.2:138 121 232 | 277 | SINE (AluYa5) | 1 |
CP068272.2:138 607 851 | 30 | SINE (Alu) | 1 |
CP068272.2:155 567 174 | 274 | SINE (AluY) | 1 |
CP068272.2:159 090 611 | 38 | LTR (LTR8) | 1 |
CP068272.2:164 958 990 | 303 | SINE (AluY) | 1 |
CP068271.2:2 674 652 | 107 | SINE (AluSq) | 1 |
CP068271.2:4 506 976 | 47 | Retroposon (SVA_B) | 1 |
CP068271.2:7 023 835 | 58 | LTR (HERVH-int) | 1 |
CP068271.2:12 396 185 | 31 | SINE (AluSg) | 1 |
CP068271.2:15 262 062 | 60 | LTR (MER89) | 1 |
CP068271.2:20 804 211 | 47 | Retroposon (SVA_F) | 1 |
CP068271.2:23 192 907 | 51 | LINE (L1MC) | 1 |
CP068271.2:29 929 697 | 37 | LTR (HERVH-int) | 1 |
CP068271.2:39 867 656 | 331 | SINE (AluYb8) | 1 |
CP068271.2:45 911 340 | 323 | SINE (AluYa5) | 1 |
CP068271.2:48 018 072 | 323 | SINE (AluYa5) | 1 |
CP068271.2:52 200 515 | 315 | SINE (AluYg6) | 1 |
CP068271.2:54 800 608 | 60 | SINE (Alu) | 1 |
CP068271.2:55 943 911 | 304 | SINE (AluY) | 1 |
CP068271.2:56 334 427 | 321 | SINE (AluYb8) | 1 |
CP068271.2:57 541 048 | 323 | SINE (AluYb8) | 1 |
CP068271.2:64 353 162 | 77 | LINE (L1HS) | 1 |
CP068271.2:65 627 675 | 324 | SINE (AluY) | 1 |
CP068271.2:66 174 198 | 446 | Retroposon (SVA_F) | 1 |
CP068271.2:66 174 413 | 442 | Retroposon (SVA_F) | 1 |
CP068271.2:69 749 646 | 44 | SINE (Alu) | 1 |
CP068271.2:76 011 796 | 192 | SINE (AluYa5) | 1 |
CP068271.2:78 216 802 | 318 | SINE (AluYa5) | 1 |
CP068271.2:84 568 345 | 317 | SINE (AluYg6) | 1 |
CP068271.2:86 522 262 | 268 | LINE (L1HS) | 1 |
CP068271.2:96 385 565 | 327 | SINE (AluY) | 1 |
CP068271.2:98 495 109 | 242 | SINE (AluYa5) | 1 |
CP068271.2:98 998 843 | 187 | SINE (AluYb9) | 1 |
CP068271.2:109 361 785 | 120 | SINE (AluY) | 1 |
CP068271.2:110 968 118 | 326 | SINE (AluYb8) | 1 |
CP068271.2:112 163 030 | 96 | LINE (L1HS) | 1 |
CP068271.2:121 741 950 | 31 | SINE (Alu) | 1 |
CP068271.2:130 830 383 | 317 | SINE (AluSx) | 1 |
CP068271.2:132 541 792 | 144 | SINE (AluJb) | 1 |
CP068271.2:133 487 650 | 328 | SINE (AluY) | 1 |
CP068271.2:135 973 338 | 419 | LINE (L1HS) | 1 |
CP068271.2:137 801 343 | 329 | SINE (AluYe5) | 1 |
CP068271.2:138 459 440 | 311 | SINE (AluYc) | 1 |
CP068271.2:138 476 358 | 310 | SINE (AluYa5) | 1 |
CP068271.2:149 591 887 | 134 | SINE (AluYk11) | 1 |
CP068271.2:149 923 445 | 134 | SINE (AluSz) | 1 |
CP068271.2:150 461 890 | 47 | Retroposon (SVA_F) | 1 |
CP068271.2:152 200 515 | 52 | LTR (LTR5_Hs) | 1 |
CP068271.2:153 713 300 | 130 | SINE (AluSx) | 1 |
CP068270.2:1 867 928 | 44 | SINE (Alu) | 1 |
CP068270.2:4 117 692 | 328 | SINE (AluYa5) | 1 |
CP068270.2:4 348 133 | 94 | LINE (L1HS) | 1 |
CP068270.2:14 297 255 | 87 | SINE (AluSq10) | 1 |
CP068270.2:34 175 409 | 284 | SINE (AluY) | 1 |
CP068270.2:34 580 253 | 67 | LINE (L1M3) | 1 |
CP068270.2:41 686 990 | 334 | SINE (AluYb8) | 1 |
CP068270.2:51 522 000 | 311 | SINE (AluYa5) | 1 |
CP068270.2:51 532 738 | 48 | Retroposon (SVA_F) | 1 |
CP068270.2:51 604 351 | 118 | LTR (LTR12C) | 1 |
CP068270.2:54 436 680 | 313 | SINE (AluYb8) | 1 |
CP068270.2:55 866 231 | 315 | SINE (AluYa5) | 1 |
CP068270.2:58 587 319 | 330 | SINE (AluY) | 1 |
CP068270.2:60 716 533 | 315 | SINE (AluYa5) | 1 |
CP068270.2:72 074 693 | 329 | SINE (AluYa5) | 1 |
CP068270.2:87 184 808 | 320 | SINE (AluYb8) | 1 |
CP068270.2:90 822 117 | 47 | Retroposon (SVA_F) | 1 |
CP068270.2:102 018 473 | 39 | Retroposon (SVA_E) | 1 |
CP068270.2:121 797 875 | 317 | SINE (AluY) | 1 |
CP068270.2:132 282 389 | 312 | SINE (AluY) | 1 |
CP068270.2:132 464 747 | 323 | SINE (AluY) | 1 |
CP068270.2:132 610 630 | 39 | LTR (LTR12E) | 1 |
CP068270.2:135 985 556 | 112 | LINE (L3) | 1 |
CP068270.2:136 889 693 | 39 | LTR (HERVH-int) | 1 |
CP068269.2:2 353 936 | 315 | SINE (AluY) | 1 |
CP068269.2:6 664 829 | 135 | SINE (AluY) | 1 |
CP068269.2:7 855 153 | 327 | SINE (AluYb9) | 1 |
CP068269.2:9 145 491 | 320 | SINE (AluYb8) | 1 |
CP068269.2:19 378 518 | 95 | SINE (AluYa5) | 1 |
CP068269.2:28 208 722 | 312 | SINE (AluYa5) | 1 |
CP068269.2:29 465 381 | 190 | LINE (L1HS) | 1 |
CP068269.2:30 361 586 | 314 | SINE (AluY) | 1 |
CP068269.2:33 442 084 | 36 | Retroposon (SVA_F) | 1 |
CP068269.2:35 038 160 | 63 | LINE (L1PA10) | 1 |
CP068269.2:38 265 890 | 78 | Retroposon (SVA_A) | 1 |
CP068269.2:40 202 609 | 321 | SINE (AluYa5) | 1 |
CP068269.2:83 123 285 | 132 | SINE (AluY) | 1 |
CP068269.2:84 265 385 | 48 | SINE (Alu) | 1 |
CP068269.2:84 767 523 | 313 | SINE (AluYa5) | 1 |
CP068269.2:88 666 159 | 315 | SINE (AluYb8) | 1 |
CP068269.2:92 810 524 | 59 | LINE (L1P2) | 1 |
CP068269.2:95 422 400 | 36 | Retroposon (SVA_A) | 1 |
CP068269.2:102 597 254 | 306 | SINE (AluYa5) | 1 |
CP068269.2:112 443 781 | 81 | SINE (AluSz) | 1 |
CP068269.2:112 839 663 | 68 | LTR (MER52A) | 1 |
CP068269.2:119 842 404 | 312 | SINE (AluYk2) | 1 |
CP068269.2:124 311 519 | 315 | SINE (AluYb9) | 1 |
CP068269.2:138 384 259 | 298 | LINE (L1M4) | 1 |
CP068269.2:142 711 624 | 39 | Retroposon (SVA_B) | 1 |
CP068269.2:143 939 557 | 43 | SINE (AluYi6) | 1 |
CP068268.2:3 057 186 | 33 | SINE (AluYh3) | 1 |
CP068268.2:10 778 281 | 170 | SINE (AluYc) | 1 |
CP068268.2:13 230 543 | 312 | SINE (AluYb8) | 1 |
CP068268.2:14 722 876 | 64 | LINE (L1MC) | 1 |
CP068268.2:29 201 484 | 188 | LTR (MLT1F-int) | 1 |
CP068268.2:30 638 183 | 125 | SINE (AluSx) | 1 |
CP068268.2:53 450 889 | 81 | LTR (MLT1J) | 1 |
CP068268.2:60 550 872 | 127 | Retroposon (SVA_F) | 1 |
CP068268.2:67 440 301 | 327 | SINE (AluY) | 1 |
CP068268.2:72 740 845 | 39 | Retroposon (SVA_D) | 1 |
CP068268.2:72 746 623 | 47 | Retroposon (SVA_F) | 1 |
CP068268.2:72 773 055 | 313 | SINE (AluYa5) | 1 |
CP068268.2:76 207 675 | 48 | Retroposon (SVA_F) | 1 |
CP068268.2:87 790 483 | 326 | SINE (AluY) | 1 |
CP068268.2:88 939 111 | 319 | SINE (AluYa5) | 1 |
CP068268.2:97 658 629 | 311 | SINE (AluYa5) | 1 |
CP068268.2:97 822 125 | 48 | Retroposon (SVA_F) | 1 |
CP068268.2:102 921 216 | 141 | Retroposon (SVA_E) | 1 |
CP068268.2:107 018 348 | 141 | SINE (FLAM_C) | 1 |
CP068268.2:108 118 466 | 321 | SINE (AluYa5) | 1 |
CP068268.2:109 582 446 | 833 | LINE (L1HS) | 1 |
CP068268.2:113 205 090 | 311 | SINE (AluY) | 1 |
CP068268.2:123 851 455 | 318 | SINE (AluY) | 1 |
CP068267.2:473 330 | 320 | SINE (AluYe5) | 1 |
CP068267.2:8 515 636 | 30 | SINE (AluSp) | 1 |
CP068267.2:20 669 487 | 50 | Retroposon (SVA_F) | 1 |
CP068267.2:25 682 675 | 343 | SINE (AluYa5) | 1 |
CP068267.2:27 776 457 | 330 | LTR (MER61E) | 1 |
CP068267.2:58 403 047 | 325 | SINE (AluYb8) | 1 |
CP068267.2:58 991 318 | 330 | SINE (AluYb8) | 1 |
CP068267.2:60 485 034 | 78 | LINE (L1HS) | 1 |
CP068267.2:63 882 702 | 258 | LINE (L1MB8) | 1 |
CP068267.2:75 339 541 | 77 | Retroposon (SVA_F) | 1 |
CP068267.2:78 812 746 | 73 | Retroposon (SVA_B) | 1 |
CP068267.2:79 061 406 | 55 | LTR (ERVL-B4-int) | 1 |
CP068267.2:80 466 708 | 124 | LTR (LTR12D) | 1 |
CP068267.2:82 117 611 | 39 | Retroposon (SVA_B) | 1 |
CP068267.2:92 080 729 | 89 | Retroposon (SVA_F) | 1 |
CP068267.2:95 142 638 | 42 | SINE (Alu) | 1 |
CP068267.2:96 505 971 | 317 | SINE (AluYk3) | 1 |
CP068267.2:101 555 768 | 326 | SINE (AluYb8) | 1 |
CP068267.2:118 715 549 | 133 | SINE (AluSx) | 1 |
CP068267.2:119 529 515 | 48 | Retroposon (SVA_F) | 1 |
CP068267.2:125 878 132 | 153 | LINE (L1PA10) | 1 |
CP068266.2:4 668 545 | 310 | SINE (AluYg6) | 1 |
CP068266.2:5 668 025 | 298 | SINE (AluYd8) | 1 |
CP068266.2:6 807 792 | 255 | SINE (AluYk2) | 1 |
CP068266.2:7 694 453 | 129 | SINE (AluSx) | 1 |
CP068266.2:8 608 362 | 115 | Retroposon (SVA_C) | 1 |
CP068266.2:8 608 837 | 46 | Retroposon (SVA_F) | 1 |
CP068266.2:12 283 010 | 97 | Retroposon (SVA_F) | 1 |
CP068266.2:13 980 293 | 329 | SINE (AluYb8) | 1 |
CP068266.2:14 045 352 | 191 | Retroposon (SVA_C) | 1 |
CP068266.2:25 181 209 | 327 | SINE (AluY) | 1 |
CP068266.2:29 284 341 | 35 | LINE (L1P1) | 1 |
CP068266.2:29 543 251 | 312 | SINE (AluYa5) | 1 |
CP068266.2:37 920 130 | 325 | SINE (AluYb9) | 1 |
CP068266.2:37 921 040 | 317 | SINE (AluY) | 1 |
CP068266.2:38 276 130 | 41 | Retroposon (SVA_F) | 1 |
CP068266.2:38 279 973 | 45 | Retroposon (SVA_B) | 1 |
CP068266.2:38 940 562 | 337 | LINE (L1P1) | 1 |
CP068266.2:41 239 964 | 344 | LINE (L1P3) | 1 |
CP068266.2:43 644 065 | 126 | Retroposon (SVA_F) | 1 |
CP068266.2:48 293 798 | 196 | Retroposon (SVA_F) | 1 |
CP068266.2:48 294 118 | 36 | Retroposon (SVA_F) | 1 |
CP068266.2:49 751 836 | 85 | SINE (AluY) | 1 |
CP068266.2:64 182 833 | 84 | LINE (L1PA11) | 1 |
CP068266.2:71 111 190 | 320 | SINE (AluYb9) | 1 |
CP068266.2:77 423 086 | 101 | SINE (MIRb) | 1 |
CP068266.2:83 544 576 | 315 | SINE (AluY) | 1 |
CP068266.2:83 671 163 | 322 | SINE (AluYb8) | 1 |
CP068266.2:85 910 505 | 315 | SINE (AluY) | 1 |
CP068266.2:86 830 420 | 144 | SINE (AluSx) | 1 |
CP068266.2:87 458 392 | 320 | SINE (AluY) | 1 |
CP068266.2:93 946 035 | 317 | SINE (AluY) | 1 |
CP068266.2:96 952 164 | 305 | SINE (AluYa5) | 1 |
CP068266.2:101 881 504 | 101 | SINE (AluYb8) | 1 |
CP068266.2:104 884 820 | 186 | SINE (AluYb9) | 1 |
CP068266.2:121 990 178 | 439 | Retroposon (SVA_E) | 1 |
CP068266.2:126 429 324 | 326 | SINE (AluYb8) | 1 |
CP068266.2:126 723 341 | 318 | SINE (AluYb8) | 1 |
CP068265.2:22 184 435 | 327 | SINE (AluY) | 1 |
CP068265.2:25 455 895 | 315 | SINE (AluY) | 1 |
CP068265.2:41 908 589 | 236 | SINE (AluY) | 1 |
CP068265.2:45 366 989 | 317 | SINE (AluYa5) | 1 |
CP068265.2:49 104 638 | 47 | LINE (L1PA8) | 1 |
CP068265.2:56 231 795 | 114 | SINE (AluY) | 1 |
CP068265.2:57 263 121 | 290 | SINE (AluYb9) | 1 |
CP068265.2:68 684 135 | 323 | SINE (AluYa5) | 1 |
CP068265.2:69 509 381 | 322 | SINE (AluYb8) | 1 |
CP068265.2:77 302 799 | 314 | SINE (AluYa5) | 1 |
CP068265.2:78 735 172 | 314 | SINE (AluYa5) | 1 |
CP068265.2:82 608 311 | 220 | SINE (AluYc) | 1 |
CP068265.2:85 705 616 | 304 | SINE (AluYa5) | 1 |
CP068265.2:85 943 031 | 288 | SINE (AluYa5) | 1 |
CP068265.2:88 073 850 | 314 | SINE (AluSc) | 1 |
CP068265.2:88 953 729 | 326 | SINE (AluY) | 1 |
CP068265.2:98 181 350 | 134 | SINE (AluYk2) | 1 |
CP068265.2:107 842 849 | 60 | LINE (L1M4) | 1 |
CP068265.2:109 388 985 | 313 | SINE (AluYb8) | 1 |
CP068265.2:112 115 809 | 313 | SINE (AluYa5) | 1 |
CP068264.2:5 878 583 | 33 | LTR (LTR6A) | 1 |
CP068264.2:18 410 907 | 164 | SINE (AluSx4) | 1 |
CP068264.2:28 610 960 | 296 | SINE (AluYa5) | 1 |
CP068264.2:31 745 095 | 40 | Retroposon (SVA_C) | 1 |
CP068264.2:34 300 938 | 324 | SINE (AluYa5) | 1 |
CP068264.2:34 313 688 | 131 | SINE (AluYe5) | 1 |
CP068264.2:49 662 177 | 38 | Retroposon (SVA_A) | 1 |
CP068264.2:92 910 435 | 53 | SINE (Alu) | 1 |
CP068263.2:18 206 748 | 27 | DNA (Tigger3c) | 1 |
CP068263.2:25 673 162 | 392 | LINE (L1HS) | 1 |
CP068263.2:30 617 379 | 312 | SINE (AluYc) | 1 |
CP068263.2:34 360 211 | 346 | SINE (AluYa5) | 1 |
CP068263.2:38 489 390 | 36 | Retroposon (SVA_F) | 1 |
CP068263.2:53 913 580 | 201 | Retroposon (SVA_D) | 1 |
CP068263.2:58 168 194 | 311 | SINE (AluYa5) | 1 |
CP068263.2:58 727 456 | 322 | SINE (AluY) | 1 |
CP068263.2:67 938 502 | 312 | SINE (AluYa5) | 1 |
CP068263.2:75 994 840 | 163 | SINE (AluSx4) | 1 |
CP068263.2:78 233 814 | 315 | SINE (AluY) | 1 |
CP068263.2:82 606 621 | 317 | SINE (AluYa5) | 1 |
CP068263.2:92 385 824 | 305 | SINE (AluYk2) | 1 |
CP068263.2:97 321 467 | 49 | SINE (Alu) | 1 |
CP068262.2:4 839 789 | 41 | SINE (Alu) | 1 |
CP068262.2:5 231 896 | 79 | Retroposon (SVA_F) | 1 |
CP068262.2:11 372 260 | 247 | Retroposon (SVA_A) | 1 |
CP068262.2:15 116 748 | 85 | SINE (AluSc) | 1 |
CP068262.2:21 163 025 | 317 | SINE (AluY) | 1 |
CP068262.2:21 521 202 | 122 | SINE (AluJb) | 1 |
CP068262.2:26 873 866 | 336 | SINE (AluY) | 1 |
CP068262.2:31 557 109 | 48 | Retroposon (SVA_F) | 1 |
CP068262.2:62 994 200 | 43 | SINE (AluJo) | 1 |
CP068262.2:63 015 018 | 316 | SINE (AluYa5) | 1 |
CP068262.2:63 087 387 | 180 | SINE (AluYa5) | 1 |
CP068262.2:64 052 598 | 319 | SINE (AluYa5) | 1 |
CP068262.2:64 555 275 | 134 | SINE (AluSz) | 1 |
CP068262.2:64 559 334 | 55 | SINE (AluSx3) | 1 |
CP068262.2:83 862 431 | 133 | SINE (AluSc8) | 1 |
CP068262.2:86 496 712 | 314 | SINE (AluYa5) | 1 |
CP068262.2:88 229 527 | 35 | DNA (Tigger3c) | 1 |
CP068262.2:95 205 915 | 33 | LINE (L1MD) | 1 |
CP068262.2:95 699 163 | 42 | SINE (FLAM_C) | 1 |
CP068262.2:95 928 542 | 313 | SINE (AluSx) | 1 |
CP068261.2:285 540 | 345 | SINE (AluYb8) | 1 |
CP068261.2:3 000 911 | 39 | Retroposon (SVA_D) | 1 |
CP068261.2:3 001 300 | 39 | Retroposon (SVA_D) | 1 |
CP068261.2:4 300 934 | 257 | LINE (L1HS) | 1 |
CP068261.2:28 153 050 | 173 | Retroposon (SVA_F) | 1 |
CP068261.2:38 008 693 | 192 | SINE (AluYc) | 1 |
CP068261.2:45 034 219 | 255 | Retroposon (SVA_F) | 1 |
CP068261.2:55 582 093 | 670 | LINE (L1PREC2) | 1 |
CP068261.2:61 447 465 | 325 | SINE (AluY) | 1 |
CP068261.2:68 170 920 | 159 | LTR (LTR12C) | 1 |
CP068261.2:69 968 390 | 311 | SINE (AluYa5) | 1 |
CP068261.2:75 907 696 | 47 | SINE (AluJr4) | 1 |
CP068261.2:76 696 269 | 95 | SINE (AluY) | 1 |
CP068261.2:78 886 239 | 314 | SINE (AluYg6) | 1 |
CP068260.2:3 032 121 | 146 | SINE (AluYk2) | 1 |
CP068260.2:9 097 970 | 101 | LTR (LTR12C) | 1 |
CP068260.2:9 564 592 | 322 | SINE (AluYa5) | 1 |
CP068260.2:14 173 520 | 35 | Retroposon (SVA_F) | 1 |
CP068260.2:28 466 226 | 349 | SINE (AluY) | 1 |
CP068260.2:35 273 621 | 317 | SINE (AluYa5) | 1 |
CP068260.2:39 128 267 | 316 | SINE (AluYa5) | 1 |
CP068260.2:46 361 667 | 327 | SINE (AluYb8) | 1 |
CP068260.2:46 381 044 | 31 | SINE (Alu) | 1 |
CP068260.2:53 996 308 | 73 | LINE (L1PBa) | 1 |
CP068260.2:54 439 434 | 166 | LINE (L1HS) | 1 |
CP068260.2:56 003 038 | 320 | SINE (AluYa5) | 1 |
CP068260.2:57 710 913 | 314 | SINE (AluSp) | 1 |
CP068260.2:64 814 676 | 174 | Retroposon (SVA_F) | 1 |
CP068260.2:68 770 943 | 325 | SINE (AluYb9) | 1 |
CP068260.2:71 698 063 | 53 | LINE (L1P3b) | 1 |
CP068260.2:76 087 428 | 323 | SINE (AluYb8) | 1 |
CP068260.2:77 079 847 | 311 | SINE (AluYk2) | 1 |
CP068259.2:646 264 | 71 | SINE (AluSp) | 1 |
CP068259.2:1 895 198 | 134 | SINE (AluJb) | 1 |
CP068259.2:6 976 774 | 325 | SINE (AluY) | 1 |
CP068259.2:16 099 582 | 316 | SINE (AluY) | 1 |
CP068259.2:16 391 116 | 140 | SINE (AluJb) | 1 |
CP068259.2:17 727 863 | 50 | LTR (LTR7) | 1 |
CP068259.2:31 262 878 | 598 | LINE (L1P4) | 1 |
CP068259.2:36 653 349 | 175 | Retroposon (SVA_F) | 1 |
CP068259.2:49 705 356 | 83 | SINE (AluSc8) | 1 |
CP068259.2:53 674 285 | 100 | SINE (AluJb) | 1 |
CP068259.2:54 049 533 | 135 | SINE (AluSx) | 1 |
CP068258.2:996 590 | 101 | LINE (L2a) | 1 |
CP068258.2:5 544 074 | 303 | SINE (AluYc) | 1 |
CP068258.2:5 544 134 | 289 | SINE (AluYc) | 1 |
CP068258.2:9 684 360 | 118 | LTR (LTR12C) | 1 |
CP068258.2:16 901 268 | 325 | SINE (AluYa5) | 1 |
CP068258.2:16 945 493 | 343 | SINE (AluY) | 1 |
CP068258.2:30 503 819 | 38 | Retroposon (SVA_C) | 1 |
CP068258.2:30 946 834 | 128 | LTR (LTR5A) | 1 |
CP068258.2:31 430 118 | 813 | LTR (PRIMA41-int) | 1 |
CP068258.2:31 915 416 | 391 | LINE (L1P1) | 1 |
CP068258.2:33 846 866 | 46 | Retroposon (SVA_F) | 1 |
CP068258.2:37 925 585 | 290 | SINE (AluSx) | 1 |
CP068258.2:41 313 432 | 310 | SINE (AluYb8) | 1 |
CP068258.2:52 135 819 | 35 | SINE (Alu) | 1 |
CP068258.2:55 000 758 | 56 | DNA (MER20) | 1 |
CP068258.2:57 639 784 | 74 | LINE (L1P1) | 1 |
CP068258.2:62 091 491 | 125 | SINE (AluSc) | 1 |
CP068257.2:12 279 093 | 189 | Retroposon (SVA_A) | 1 |
CP068257.2:21 725 991 | 328 | SINE (AluYk2) | 1 |
CP068257.2:23 482 882 | 318 | SINE (AluYk2) | 1 |
CP068257.2:25 547 133 | 320 | SINE (AluYa5) | 1 |
CP068257.2:34 874 715 | 319 | SINE (AluY) | 1 |
CP068257.2:39 632 876 | 50 | LTR (LTR7) | 1 |
CP068257.2:42 828 950 | 135 | SINE (AluSz) | 1 |
CP068257.2:43 632 831 | 48 | Retroposon (SVA_F) | 1 |
CP068256.2:18 235 399 | 357 | SINE (AluYb8) | 1 |
CP068256.2:22 297 087 | 48 | Retroposon (SVA_F) | 1 |
CP068256.2:28 841 478 | 320 | SINE (AluYa5) | 1 |
CP068256.2:29 242 941 | 316 | SINE (AluYa5) | 1 |
CP068256.2:32 056 342 | 296 | Retroposon (SVA_F) | 1 |
CP068256.2:32 611 944 | 90 | LTR (MER11C) | 1 |
CP068256.2:43 299 732 | 313 | SINE (AluYa5) | 1 |
CP068256.2:50 173 743 | 150 | LTR (LTR12C) | 1 |
CP068255.2:295 086 | 164 | SINE (AluSx) | 1 |
CP068255.2:1 251 770 | 209 | SINE (AluJb) | 1 |
CP068255.2:24 293 358 | 128 | Retroposon (SVA_F) | 1 |
CP068255.2:25 517 581 | 333 | SINE (AluYb8) | 1 |
CP068255.2:45 336 671 | 220 | LINE (L1M4b) | 1 |
CP068255.2:45 336 912 | 541 | LINE (L1M4a1) | 1 |
CP068255.2:45 683 112 | 125 | Retroposon (SVA_F) | 1 |
CP068255.2:76 700 508 | 47 | Retroposon (SVA_F) | 1 |
CP068255.2:83 656 505 | 86 | LINE (L1MC5) | 1 |
CP068255.2:83 683 173 | 331 | SINE (AluY) | 1 |
CP068255.2:84 185 565 | 49 | LINE (L1P1) | 1 |
CP068255.2:86 915 067 | 296 | SINE (AluYb8) | 1 |
CP068255.2:88 182 066 | 136 | SINE (AluY) | 1 |
CP068255.2:90 623 038 | 134 | SINE (AluSq) | 1 |
CP068255.2:100 344 903 | 51 | LINE (L1PB) | 1 |
CP068255.2:136 580 331 | 50 | LTR (LTR7) | 1 |
CP068255.2:146 566 678 | 210 | LINE (L1P2) | 1 |
CP086569.2:306 952 | 164 | SINE (AluSx) | 1 |
CP086569.2:949 758 | 135 | SINE (AluSq) | 1 |
CP086569.2:1 096 397 | 125 | Retroposon (SVA_F) | 1 |
Allele frequency is shown for insertions for each chromosome. Each dot marks a different insertion.
This is the classification of TEs by class (I or II), family (e.g., SINE), subfamily (e.g., Alu) and name (e.g., AluY). SVA, Alu and L1 elements have their own table on the Class I section.
Repeat | Repeat | Unique | Total | Total |
|---|---|---|---|---|
DNA | hAT | 3 | 6 | 5 |
TcMar | 2 | 3 | 3 | |
LINE | CR1 | 1 | 2 | 2 |
L1 | 88 | 174 | 173 | |
L2 | 3 | 6 | 6 | |
LTR | ERV1 | 28 | 54 | 51 |
ERVK | 3 | 6 | 6 | |
ERVL | 10 | 19 | 16 | |
Retroposon | SVA | 130 | 249 | 232 |
SINE | Alu | 751 | 1 501 | 1 488 |
MIR | 1 | 2 | 1 | |
Total | - | 1 020 | 2 022 | 1 983 |
Name | Unique | Total | Total |
|---|---|---|---|
SVA A | 14 | 28 | 25 |
SVA B | 3 | 6 | 6 |
SVA C | 4 | 7 | 7 |
SVA D | 6 | 11 | 11 |
SVA E | 21 | 42 | 38 |
SVA F | 81 | 153 | 143 |
SVA F1 | 1 | 2 | 2 |
Total | 130 | 249 | 232 |
Name | Unique | Total | Total |
|---|---|---|---|
Alu | 3 | 6 | 5 |
AluJb | 15 | 30 | 28 |
AluJo | 1 | 2 | 1 |
AluSc | 3 | 6 | 6 |
AluSc8 | 4 | 8 | 8 |
AluSg | 7 | 14 | 13 |
AluSg4 | 1 | 2 | 2 |
AluSp | 2 | 4 | 4 |
AluSq | 2 | 4 | 4 |
AluSx | 32 | 64 | 60 |
AluSx3 | 3 | 6 | 5 |
AluSx4 | 3 | 6 | 5 |
AluSz | 5 | 10 | 9 |
AluSz6 | 1 | 2 | 2 |
AluY | 170 | 340 | 340 |
AluYa5 | 220 | 440 | 440 |
AluYa8 | 4 | 8 | 8 |
AluYb8 | 140 | 280 | 280 |
AluYb9 | 23 | 46 | 46 |
AluYc | 15 | 30 | 30 |
AluYd8 | 3 | 6 | 5 |
AluYe5 | 23 | 46 | 46 |
AluYg6 | 19 | 38 | 38 |
AluYh7 | 3 | 6 | 6 |
AluYi6 | 3 | 6 | 6 |
AluYj4 | 2 | 4 | 4 |
AluYk11 | 1 | 2 | 2 |
AluYk12 | 2 | 4 | 4 |
AluYk2 | 33 | 66 | 66 |
AluYk3 | 2 | 4 | 4 |
AluYk4 | 2 | 4 | 4 |
FLAM C | 2 | 4 | 4 |
FRAM | 2 | 3 | 3 |
Total | 751 | 1 501 | 1 488 |
Name | Unique | Total | Total |
|---|---|---|---|
L1HS | 42 | 84 | 84 |
L1M2 | 3 | 6 | 6 |
L1M3 | 2 | 4 | 4 |
L1M3b | 1 | 2 | 2 |
L1M4 | 2 | 4 | 4 |
L1M5 | 1 | 2 | 2 |
L1MB2 | 1 | 2 | 2 |
L1MB8 | 1 | 2 | 2 |
L1MC | 1 | 2 | 2 |
L1MC4 | 2 | 4 | 4 |
L1MC5 | 1 | 2 | 2 |
L1P1 | 5 | 10 | 9 |
L1P3 | 7 | 13 | 13 |
L1P3b | 1 | 2 | 2 |
L1P4 | 1 | 1 | 1 |
L1P4a | 1 | 2 | 2 |
L1PA10 | 1 | 2 | 2 |
L1PA11 | 1 | 2 | 2 |
L1PA12 | 1 | 2 | 2 |
L1PA13 | 1 | 2 | 2 |
L1PA16 | 2 | 4 | 4 |
L1PA2 | 2 | 4 | 4 |
L1PA3 | 1 | 2 | 2 |
L1PA7 | 2 | 4 | 4 |
L1PB | 2 | 4 | 4 |
L1PB1 | 2 | 4 | 4 |
L1PREC2 | 1 | 2 | 2 |
Total | 88 | 174 | 173 |
Position | Length | Type | Gene | Annotation | Occurrences |
|---|---|---|---|---|---|
CP068255.2:1 251 770 | 209 | SINE (Alu) | ASMTL-AS1 | Intron | 2 |
CP068255.2:5 749 734 | 114 | SINE (Alu) | NLGN4X | Intron | 2 |
CP068255.2:18 657 080 | 53 | SINE (Alu) | ADGRG2 | Intron | 2 |
CP068255.2:22 237 816 | 314 | SINE (Alu) | PTCHD1-AS | Intron | 2 |
CP068255.2:24 293 358 | 128 | Retroposon (SVA) | POLA1 | Intron | 2 |
CP068255.2:28 925 984 | 49 | Retroposon (SVA) | IL1RAPL1 | Intron | 2 |
CP068255.2:32 882 840 | 308 | SINE (Alu) | DMD | Intron | 2 |
CP068255.2:83 564 693 | 326 | SINE (Alu) | SATL1 | Intron | 2 |
CP068255.2:83 656 505 | 86 | LINE (L1) | SATL1 | Intron | 2 |
CP068255.2:83 683 173 | 331 | SINE (Alu) | ZNF711 | Intron | 2 |
CP068255.2:84 713 986 | 311 | SINE (Alu) | DACH2 | Intron | 2 |
CP068255.2:90 623 038 | 134 | SINE (Alu) | PCDH11X | Intron | 2 |
CP068255.2:95 509 280 | 319 | SINE (Alu) | DIAPH2 | Intron | 2 |
CP068255.2:100 344 903 | 51 | LINE (L1) | ZMAT1 | Intron | 2 |
CP068255.2:110 764 583 | 6 052 | LINE (L1) | RTL4 | Intron | 2 |
CP068255.2:120 735 396 | 327 | SINE (Alu) | LOC101928359 | Intron | 2 |
CP068255.2:135 342 456 | 346 | SINE (Alu) | GPR101 | Promoter | 2 |
CP068255.2:146 257 439 | 448 | Retroposon (SVA) | FMR1NB | Intron | 2 |
CP068255.2:295 086 | 164 | SINE (Alu) | LOC102724521 | Intron | 2 |
CP068256.2:7 583 739 | 315 | SINE (Alu) | LOC128966699 | Promoter | 2 |
CP068256.2:18 235 399 | 357 | SINE (Alu) | SLC25A18 | Intron | 2 |
CP068256.2:25 461 788 | 294 | SINE (Alu) | KIAA1671 | Intron | 2 |
CP068256.2:27 234 737 | 2 641 | Retroposon (SVA) | MIATNB | Intron | 2 |
CP068256.2:28 841 478 | 320 | SINE (Alu) | TTC28 | Intron | 2 |
CP068256.2:29 242 941 | 316 | SINE (Alu) | CCDC117 | Intron | 2 |
CP068256.2:32 056 342 | 296 | Retroposon (SVA) | SFI1 | Intron | 1 |
CP068256.2:32 276 540 | 315 | SINE (Alu) | DEPDC5 | Intron | 2 |
CP068256.2:34 131 369 | 120 | SINE (Alu) | LARGE1 | Intron | 2 |
CP068256.2:40 671 166 | 320 | SINE (Alu) | TNRC6B | Intron | 2 |
CP068256.2:41 793 756 | 312 | SINE (Alu) | ZC3H7B | Intron | 2 |
CP068256.2:43 028 173 | 130 | SINE (Alu) | LOC124900479 | Intron | 1 |
CP068256.2:43 299 732 | 313 | SINE (Alu) | ARFGAP3 | Intron | 2 |
CP068256.2:43 634 478 | 324 | SINE (Alu) | TSPO | Intron | 2 |
CP068256.2:44 411 840 | 1 148 | LINE (L1) | PNPLA3 | Intron | 2 |
CP068256.2:45 651 198 | 124 | SINE (Alu) | NUP50 | Intron | 2 |
CP068257.2:12 279 093 | 189 | Retroposon (SVA) | LOC110091776 | Promoter | 2 |
CP068257.2:13 335 804 | 323 | SINE (Alu) | NRIP1 | Intron | 2 |
CP068257.2:13 911 959 | 386 | LINE (L1) | LOC105369302 | Intron | 2 |
CP068257.2:15 595 054 | 1 300 | LINE (L1) | LOC107985511 | Intron | 2 |
CP068257.2:16 504 323 | 3 394 | LINE (L1) | CHODL | Intron | 2 |
CP068257.2:19 777 200 | 199 | LTR (ERVL) | NCAM2 | Intron | 1 |
CP068257.2:21 725 991 | 328 | SINE (Alu) | D21S2088E | Intron | 2 |
CP068257.2:23 810 679 | 259 | LINE (L1) | LOC105372753 | Intron | 2 |
CP068257.2:25 547 133 | 320 | SINE (Alu) | LOC102724355 | Intron | 2 |
CP068257.2:34 874 715 | 319 | SINE (Alu) | CLDN14-AS1 | Intron | 2 |
CP068257.2:36 014 613 | 321 | SINE (Alu) | KCNJ6-AS1 | Intron | 2 |
CP068257.2:38 974 146 | 117 | SINE (Alu) | DSCAM | Intron | 2 |
CP068257.2:39 632 876 | 50 | LTR (ERV1) | BACE2 | Intron | 2 |
CP068257.2:44 520 712 | 144 | LTR (ERV1) | FTCD | Intron | 2 |
CP068257.2:44 525 067 | 153 | LTR (ERV1) | FTCD | Intron | 1 |
CP068258.2:1 197 104 | 155 | SINE (Alu) | PSMF1 | Intron | 1 |
CP068258.2:8 879 007 | 301 | SINE (Alu) | PLCB1 | Intron | 2 |
CP068258.2:9 667 448 | 319 | SINE (Alu) | LOC101929348 | Intron | 2 |
CP068258.2:9 684 360 | 118 | LTR (ERV1) | PAK5 | Intron | 2 |
CP068258.2:9 703 216 | 287 | SINE (Alu) | PAK5 | Intron | 2 |
CP068258.2:15 176 135 | 290 | SINE (Alu) | MACROD2 | Intron | 2 |
CP068258.2:15 781 254 | 814 | LINE (L1) | MACROD2 | Intron | 2 |
CP068258.2:21 237 843 | 1 435 | LINE (L1) | KIZ | Intron | 2 |
CP068258.2:25 627 225 | 446 | Retroposon (SVA) | NINL | Intron | 2 |
CP068258.2:33 194 638 | 125 | Retroposon (SVA) | DEFB124 | Intron | 2 |
CP068258.2:35 932 030 | 321 | SINE (Alu) | ASIP | Intron | 2 |
CP068258.2:36 754 499 | 319 | SINE (Alu) | TRPC4AP | Intron | 2 |
CP068258.2:36 761 459 | 96 | LTR (ERVL) | TRPC4AP | Intron | 1 |
CP068258.2:36 874 438 | 215 | Retroposon (SVA) | MMP24-AS1-EDEM2 | Intron | 2 |
CP068258.2:36 875 038 | 53 | Retroposon (SVA) | MMP24-AS1-EDEM2 | Intron | 1 |
CP068258.2:37 925 585 | 290 | SINE (Alu) | EPB41L1 | Intron | 2 |
CP068258.2:38 114 785 | 94 | SINE (Alu) | DLGAP4 | Intron | 2 |
CP068258.2:38 911 585 | 312 | SINE (Alu) | RPN2 | Intron | 2 |
CP068258.2:60 921 676 | 308 | SINE (Alu) | ZNF831 | Intron | 2 |
CP068258.2:62 091 491 | 125 | SINE (Alu) | MIR646HG | Intron | 2 |
CP068258.2:63 187 711 | 319 | SINE (Alu) | CDH4 | Intron | 2 |
CP068259.2:1 895 198 | 134 | SINE (Alu) | SCAMP4 | Intron | 2 |
CP068259.2:1 997 543 | 308 | SINE (Alu) | LOC107985278 | Intron | 2 |
CP068259.2:2 535 989 | 124 | SINE (Alu) | GNG7 | Intron | 2 |
CP068259.2:3 262 720 | 318 | SINE (Alu) | CELF5 | Intron | 2 |
CP068259.2:3 888 434 | 300 | SINE (Alu) | ATCAY | Intron | 2 |
CP068259.2:6 141 007 | 264 | SINE (Alu) | ACSBG2 | Intron | 2 |
CP068259.2:6 151 665 | 290 | SINE (Alu) | ACSBG2 | Intron | 2 |
CP068259.2:6 976 774 | 325 | SINE (Alu) | ADGRE4P | Intron | 2 |
CP068259.2:9 618 039 | 1 073 | LTR (ERVL) | ZNF560 | Intron | 2 |
CP068259.2:10 463 384 | 309 | SINE (Alu) | ICAM3 | Intron | 2 |
CP068259.2:17 856 391 | 165 | SINE (Alu) | MAP1S | Intron | 2 |
CP068259.2:18 265 763 | 319 | SINE (Alu) | MAST3 | Intron | 2 |
CP068259.2:21 241 834 | 335 | SINE (Alu) | ZNF714 | Intron | 2 |
CP068259.2:22 003 898 | 97 | Retroposon (SVA) | LOC105372324 | Intron | 2 |
CP068259.2:22 772 644 | 312 | SINE (Alu) | ZNF492 | Promoter | 2 |
CP068259.2:22 775 504 | 307 | SINE (Alu) | ZNF492 | Intron | 2 |
CP068259.2:23 707 798 | 576 | Retroposon (SVA) | LOC105372339 | Intron | 2 |
CP068259.2:31 895 943 | 960 | LTR (ERVK) | VSTM2B-DT | Intron | 2 |
CP068259.2:40 925 916 | 77 | Retroposon (SVA) | SIPA1L3 | Intron | 2 |
CP068259.2:41 343 632 | 135 | SINE (Alu) | RYR1 | Intron | 1 |
CP068259.2:44 182 455 | 292 | SINE (Alu) | B9D2 | Intron | 1 |
CP068259.2:47 849 106 | 91 | SINE (Alu) | RELB | Intron | 2 |
CP068259.2:49 705 356 | 83 | SINE (Alu) | ARHGAP35 | Intron | 2 |
CP068259.2:54 049 533 | 135 | SINE (Alu) | LOC105372442 | Intron | 2 |
CP068259.2:54 361 759 | 311 | SINE (Alu) | LINC01872 | Intron | 2 |
CP068259.2:56 273 788 | 202 | SINE (Alu) | ZNF665 | Promoter | 2 |
CP068259.2:58 069 652 | 330 | SINE (Alu) | NLRP2 | Intron | 2 |
CP068259.2:58 093 116 | 49 | Retroposon (SVA) | NLRP2 | Intron | 1 |
CP068259.2:59 334 673 | 140 | LTR (ERV1) | ZSCAN5A | Intron | 1 |
CP068259.2:59 694 584 | 315 | SINE (Alu) | ZNF71 | Intron | 2 |
CP068259.2:61 501 640 | 173 | Retroposon (SVA) | ZNF584 | Intron | 2 |
CP068259.2:430 837 | 132 | SINE (Alu) | CIMAP1D | Intron | 2 |
CP068259.2:646 264 | 71 | SINE (Alu) | PRSS57 | Intron | 2 |
CP068259.2:773 677 | 308 | SINE (Alu) | PLPPR3 | Intron | 2 |
CP068260.2:3 032 121 | 146 | SINE (Alu) | EMILIN2 | Intron | 2 |
CP068260.2:11 073 229 | 317 | SINE (Alu) | PIEZO2 | Intron | 2 |
CP068260.2:13 014 200 | 326 | SINE (Alu) | PTPN2 | Intron | 2 |
CP068260.2:27 152 079 | 317 | SINE (Alu) | CHST9 | Intron | 2 |
CP068260.2:35 273 621 | 317 | SINE (Alu) | MAPRE2 | Intron | 2 |
CP068260.2:50 011 949 | 174 | Retroposon (SVA) | ACAA2 | Intron | 1 |
CP068260.2:53 663 279 | 319 | SINE (Alu) | DCC | Intron | 2 |
CP068260.2:56 003 038 | 320 | SINE (Alu) | LOC105372130 | Intron | 2 |
CP068260.2:56 891 790 | 331 | SINE (Alu) | WDR7 | Intron | 2 |
CP068260.2:57 914 127 | 142 | SINE (Alu) | ATP8B1 | Intron | 2 |
CP068260.2:59 685 434 | 314 | SINE (Alu) | CCBE1 | Intron | 2 |
CP068260.2:66 072 639 | 337 | SINE (Alu) | CDH7 | Intron | 2 |
CP068260.2:69 709 407 | 314 | SINE (Alu) | DOK6 | Intron | 2 |
CP068260.2:70 644 924 | 312 | SINE (Alu) | RPS2P6 | Promoter | 2 |
CP068260.2:70 644 924 | 312 | SINE (Alu) | LOC124908034 | Intron | 2 |
CP068260.2:71 698 063 | 53 | LINE (L1) | LOC107985179 | Intron | 2 |
CP068260.2:73 827 616 | 319 | SINE (Alu) | LOC105372190 | Intron | 2 |
CP068260.2:77 079 847 | 311 | SINE (Alu) | ZNF236 | Promoter | 2 |
CP068260.2:77 079 847 | 311 | SINE (Alu) | ZNF236 | Intron | 2 |
CP068260.2:77 259 157 | 173 | Retroposon (SVA) | MBP | Intron | 2 |
CP068261.2:1 101 211 | 320 | SINE (Alu) | ABR | Intron | 2 |
CP068261.2:2 705 744 | 84 | SINE (Alu) | RAP1GAP2 | Intron | 2 |
CP068261.2:9 176 006 | 133 | SINE (Alu) | STX8 | Intron | 2 |
CP068261.2:10 207 977 | 333 | SINE (Alu) | LOC107985004 | Intron | 2 |
CP068261.2:11 562 452 | 331 | SINE (Alu) | DNAH9 | Intron | 2 |
CP068261.2:13 709 042 | 286 | SINE (Alu) | LOC100506974 | Intron | 2 |
CP068261.2:19 987 002 | 2 410 | Retroposon (SVA) | SPECC1 | Intron | 2 |
CP068261.2:20 934 081 | 95 | Retroposon (SVA) | LOC124900389 | Intron | 2 |
CP068261.2:32 278 209 | 348 | LINE (L1) | NF1 | Intron | 2 |
CP068261.2:33 256 488 | 169 | SINE (Alu) | RHBDL3 | Intron | 2 |
CP068261.2:33 264 228 | 184 | SINE (Alu) | RHBDL3 | Intron | 2 |
CP068261.2:38 008 693 | 192 | SINE (Alu) | AATF | Intron | 2 |
CP068261.2:45 034 219 | 255 | Retroposon (SVA) | ASB16-AS1 | Intron | 2 |
CP068261.2:49 291 096 | 324 | SINE (Alu) | SKAP1 | Intron | 2 |
CP068261.2:52 198 654 | 330 | SINE (Alu) | LINC02071 | Intron | 2 |
CP068261.2:58 722 101 | 310 | SINE (Alu) | MRPS23 | Intron | 2 |
CP068261.2:58 788 526 | 320 | SINE (Alu) | CUEDC1 | Intron | 2 |
CP068261.2:61 447 465 | 325 | SINE (Alu) | LINC01999 | Intron | 2 |
CP068261.2:68 400 649 | 315 | SINE (Alu) | PITPNC1 | Intron | 2 |
CP068261.2:68 426 011 | 300 | SINE (Alu) | PITPNC1 | Intron | 2 |
CP068261.2:69 968 390 | 311 | SINE (Alu) | ABCA6 | Intron | 2 |
CP068261.2:75 935 935 | 315 | SINE (Alu) | KCTD2 | Intron | 2 |
CP068261.2:76 696 269 | 95 | SINE (Alu) | UNK | Intron | 2 |
CP068261.2:78 886 239 | 314 | SINE (Alu) | TNRC6C | Intron | 2 |
CP068261.2:81 014 286 | 314 | SINE (Alu) | GAA | Intron | 2 |
CP068261.2:82 055 352 | 321 | SINE (Alu) | AATK | Intron | 2 |
CP068261.2:82 527 911 | 321 | SINE (Alu) | NPLOC4 | Promoter | 2 |
CP068261.2:82 527 911 | 321 | SINE (Alu) | NPLOC4 | Intron | 2 |
CP068261.2:83 676 846 | 1 407 | Retroposon (SVA) | TBCD | Intron | 2 |
CP068261.2:455 384 | 97 | Retroposon (SVA) | VPS53 | Intron | 2 |
CP068261.2:482 199 | 96 | Retroposon (SVA) | VPS53 | Intron | 1 |
CP068261.2:718 177 | 310 | SINE (Alu) | NXN | Intron | 2 |
CP068262.2:5 324 686 | 318 | SINE (Alu) | RBFOX1 | Intron | 2 |
CP068262.2:6 773 894 | 1 435 | LINE (L1) | RBFOX1 | Intron | 2 |
CP068262.2:7 207 290 | 327 | SINE (Alu) | RBFOX1 | Intron | 2 |
CP068262.2:11 372 260 | 247 | Retroposon (SVA) | LOC105371082 | Intron | 1 |
CP068262.2:15 116 748 | 85 | SINE (Alu) | PDXDC1 | Intron | 2 |
CP068262.2:19 426 191 | 321 | SINE (Alu) | TMC5 | Intron | 2 |
CP068262.2:21 163 025 | 317 | SINE (Alu) | LOC105371123 | Intron | 2 |
CP068262.2:63 015 018 | 316 | SINE (Alu) | RSPRY1 | Intron | 2 |
CP068262.2:64 052 598 | 319 | SINE (Alu) | CFAP263 | Intron | 2 |
CP068262.2:64 555 275 | 134 | SINE (Alu) | LOC107984867 | Intron | 1 |
CP068262.2:64 559 334 | 55 | SINE (Alu) | LOC107984867 | Intron | 2 |
CP068262.2:65 734 387 | 317 | SINE (Alu) | LINC02141 | Intron | 2 |
CP068262.2:65 799 075 | 316 | SINE (Alu) | LINC02141 | Intron | 2 |
CP068262.2:75 622 943 | 53 | SINE (Alu) | WWP2 | Intron | 2 |
CP068262.2:83 862 431 | 133 | SINE (Alu) | VAT1L | Intron | 2 |
CP068262.2:85 213 072 | 327 | SINE (Alu) | WWOX | Intron | 2 |
CP068262.2:86 496 712 | 314 | SINE (Alu) | DYNLRB2-AS1 | Intron | 2 |
CP068262.2:89 164 544 | 334 | SINE (Alu) | CDH13 | Intron | 2 |
CP068262.2:95 928 542 | 313 | SINE (Alu) | SPIRE2 | Intron | 2 |
CP068262.2:449 468 | 320 | SINE (Alu) | RAB11FIP3 | Intron | 2 |
CP068262.2:480 325 | 310 | SINE (Alu) | RAB11FIP3 | Intron | 2 |
CP068263.2:21 696 325 | 306 | SINE (Alu) | LOC107984787 | Intron | 2 |
CP068263.2:25 263 076 | 323 | SINE (Alu) | GABRG3 | Intron | 2 |
CP068263.2:25 673 162 | 392 | LINE (L1) | OCA2 | Intron | 2 |
CP068263.2:30 617 379 | 312 | SINE (Alu) | FMN1 | Intron | 2 |
CP068263.2:32 986 716 | 317 | SINE (Alu) | DPH6 | Intron | 2 |
CP068263.2:33 461 746 | 125 | Retroposon (SVA) | DPH6-DT | Intron | 2 |
CP068263.2:33 609 416 | 310 | SINE (Alu) | DPH6-DT | Intron | 2 |
CP068263.2:35 220 952 | 667 | LINE (L1) | LOC105370772 | Intron | 2 |
CP068263.2:36 282 515 | 335 | SINE (Alu) | FAM98B | Intron | 2 |
CP068263.2:39 531 742 | 326 | SINE (Alu) | MGA | Intron | 2 |
CP068263.2:49 413 307 | 333 | SINE (Alu) | DMXL2 | Intron | 2 |
CP068263.2:50 969 692 | 329 | SINE (Alu) | LOC107983981 | Intron | 2 |
CP068263.2:51 766 353 | 327 | SINE (Alu) | UNC13C | Intron | 2 |
CP068263.2:53 913 580 | 201 | Retroposon (SVA) | LOC124903498 | Intron | 2 |
CP068263.2:56 106 612 | 320 | SINE (Alu) | LOC124907518 | Intron | 2 |
CP068263.2:58 168 194 | 311 | SINE (Alu) | ANXA2 | Intron | 2 |
CP068263.2:58 727 456 | 322 | SINE (Alu) | RORA | Intron | 2 |
CP068263.2:64 197 247 | 323 | SINE (Alu) | TIPIN | Intron | 2 |
CP068263.2:65 174 493 | 338 | SINE (Alu) | IQCH | Intron | 2 |
CP068263.2:66 514 204 | 300 | SINE (Alu) | CORO2B | Intron | 2 |
CP068263.2:71 508 181 | 322 | SINE (Alu) | CD276 | Intron | 2 |
CP068263.2:73 374 856 | 143 | Retroposon (SVA) | PTPN9 | Intron | 2 |
CP068263.2:75 994 840 | 163 | SINE (Alu) | CIB2 | Promoter | 2 |
CP068263.2:76 507 733 | 319 | SINE (Alu) | CHRNB4 | Intron | 2 |
CP068263.2:77 366 877 | 313 | SINE (Alu) | LOC105370919 | Promoter | 2 |
CP068263.2:78 233 814 | 315 | SINE (Alu) | ARNT2-DT | Intron | 2 |
CP068263.2:82 606 621 | 317 | SINE (Alu) | ALPK3 | Intron | 2 |
CP068263.2:82 652 649 | 68 | SINE (Alu) | SLC28A1 | Intron | 1 |
CP068263.2:83 433 722 | 329 | SINE (Alu) | AKAP13 | Intron | 2 |
CP068263.2:88 387 090 | 341 | SINE (Alu) | CRTC3 | Intron | 2 |
CP068263.2:90 786 186 | 317 | SINE (Alu) | CHD2 | Intron | 2 |
CP068263.2:92 039 791 | 304 | SINE (Alu) | MCTP2 | Intron | 2 |
CP068263.2:98 667 707 | 309 | SINE (Alu) | ALDH1A3 | Intron | 2 |
CP068264.2:13 913 770 | 332 | SINE (Alu) | OR11H2 | Promoter | 2 |
CP068264.2:14 215 583 | 351 | SINE (Alu) | OR4K14 | Intron | 2 |
CP068264.2:15 771 109 | 327 | SINE (Alu) | OR10G3 | Intron | 2 |
CP068264.2:17 906 484 | 331 | SINE (Alu) | LOC105370409 | Intron | 2 |
CP068264.2:18 207 639 | 2 019 | LINE (L1) | DHRS4L2 | Intron | 2 |
CP068264.2:18 410 907 | 164 | SINE (Alu) | CHMP4A | Intron | 1 |
CP068264.2:24 909 873 | 330 | SINE (Alu) | SCFD1 | Intron | 2 |
CP068264.2:38 244 019 | 307 | SINE (Alu) | LINC02307 | Intron | 2 |
CP068264.2:49 534 324 | 310 | SINE (Alu) | FBXO34 | Intron | 2 |
CP068264.2:65 176 813 | 327 | SINE (Alu) | PCNX1 | Intron | 2 |
CP068264.2:72 724 910 | 330 | SINE (Alu) | NRXN3 | Intron | 2 |
CP068264.2:74 707 834 | 339 | SINE (Alu) | CEP128 | Intron | 2 |
CP068264.2:82 496 919 | 297 | SINE (Alu) | KCNK10 | Intron | 2 |
CP068264.2:86 382 901 | 2 610 | Retroposon (SVA) | CPSF2 | Intron | 2 |
CP068264.2:94 611 760 | 326 | SINE (Alu) | WDR25 | Intron | 2 |
CP068264.2:95 760 108 | 331 | SINE (Alu) | LOC105370673 | Intron | 2 |
CP068264.2:101 041 873 | 367 | LTR (ERVL) | LOC124907431 | Promoter | 2 |
CP068265.2:5 252 040 | 70 | LINE (L1) | LOC124907012 | Intron | 2 |
CP068265.2:18 043 969 | 324 | SINE (Alu) | ANKRD20A9P | Intron | 2 |
CP068265.2:20 642 553 | 146 | Retroposon (SVA) | ZDHHC20 | Intron | 2 |
CP068265.2:20 642 723 | 76 | Retroposon (SVA) | ZDHHC20 | Intron | 2 |
CP068265.2:23 253 427 | 340 | SINE (Alu) | SPATA13 | Intron | 2 |
CP068265.2:24 146 112 | 322 | SINE (Alu) | TPTE2P1 | Intron | 2 |
CP068265.2:25 092 355 | 142 | LTR (ERV1) | ATP8A2 | Intron | 2 |
CP068265.2:28 214 233 | 67 | LTR (ERV1) | MTUS2 | Intron | 2 |
CP068265.2:28 541 097 | 308 | SINE (Alu) | MTUS2 | Intron | 2 |
CP068265.2:28 603 950 | 322 | SINE (Alu) | MTUS2 | Intron | 2 |
CP068265.2:33 759 335 | 76 | Retroposon (SVA) | LINC02343 | Intron | 2 |
CP068265.2:38 095 120 | 315 | SINE (Alu) | FREM2 | Intron | 2 |
CP068265.2:42 185 733 | 1 662 | Retroposon (SVA) | EPSTI1 | Intron | 2 |
CP068265.2:44 598 905 | 656 | LTR (ERV1) | TPT1-AS1 | Intron | 1 |
CP068265.2:45 294 975 | 309 | SINE (Alu) | CPB2-AS1 | Intron | 2 |
CP068265.2:45 366 989 | 317 | SINE (Alu) | LCP1 | Intron | 2 |
CP068265.2:48 723 119 | 77 | Retroposon (SVA) | SETDB2-PHF11 | Intron | 2 |
CP068265.2:49 558 566 | 286 | SINE (Alu) | DLEU1 | Intron | 2 |
CP068265.2:77 302 799 | 314 | SINE (Alu) | OBI1-AS1 | Intron | 2 |
CP068265.2:77 410 850 | 327 | SINE (Alu) | OBI1-AS1 | Intron | 2 |
CP068265.2:78 735 172 | 314 | SINE (Alu) | NDFIP2 | Intron | 2 |
CP068265.2:84 144 201 | 221 | SINE (Alu) | LOC105370290 | Intron | 2 |
CP068265.2:91 376 118 | 321 | SINE (Alu) | GPC5 | Intron | 2 |
CP068265.2:91 791 178 | 320 | SINE (Alu) | GPC5 | Intron | 2 |
CP068265.2:91 814 846 | 235 | SINE (Alu) | GPC5 | Intron | 2 |
CP068265.2:93 800 756 | 143 | SINE (Alu) | TGDS | Promoter | 2 |
CP068265.2:98 181 350 | 134 | SINE (Alu) | DOCK9 | Intron | 2 |
CP068265.2:100 098 881 | 315 | SINE (Alu) | NALCN-AS1 | Intron | 2 |
CP068265.2:100 191 892 | 100 | LTR (ERV1) | NALCN-AS1 | Intron | 1 |
CP068265.2:106 009 693 | 127 | LINE (L1) | LOC105370349 | Intron | 1 |
CP068265.2:107 842 849 | 60 | LINE (L1) | MYO16 | Intron | 2 |
CP068265.2:109 388 985 | 313 | SINE (Alu) | COL4A1 | Intron | 2 |
CP068265.2:109 862 682 | 127 | LTR (ERV1) | NAXD | Intron | 2 |
CP068265.2:109 904 832 | 325 | SINE (Alu) | CARS2 | Intron | 2 |
CP068265.2:110 189 654 | 247 | SINE (Alu) | LOC105370364 | Intron | 2 |
CP068265.2:111 926 533 | 80 | Retroposon (SVA) | ATP11AUN | Intron | 2 |
CP068265.2:112 115 809 | 313 | SINE (Alu) | ATP11A | Intron | 2 |
CP068265.2:113 172 324 | 316 | SINE (Alu) | C13orf46 | Intron | 2 |
CP068266.2:1 222 653 | 76 | LINE (L1) | ERC1 | Intron | 2 |
CP068266.2:4 668 545 | 310 | SINE (Alu) | NDUFA9 | Intron | 2 |
CP068266.2:5 668 025 | 298 | SINE (Alu) | ANO2 | Intron | 2 |
CP068266.2:6 807 792 | 255 | SINE (Alu) | CD4 | Intron | 2 |
CP068266.2:8 456 750 | 321 | SINE (Alu) | CLEC6A | Intron | 2 |
CP068266.2:10 533 754 | 171 | LTR (ERV1) | STYK1 | Intron | 2 |
CP068266.2:10 681 320 | 287 | SINE (Alu) | TAS2R8 | Promoter | 2 |
CP068266.2:10 960 223 | 334 | SINE (Alu) | PRH1-PRR4 | Intron | 2 |
CP068266.2:10 975 580 | 313 | SINE (Alu) | PRH1-PRR4 | Intron | 2 |
CP068266.2:12 283 010 | 97 | Retroposon (SVA) | BORCS5 | Intron | 2 |
CP068266.2:12 654 312 | 1 779 | LINE (L1) | APOLD1 | Intron | 2 |
CP068266.2:20 199 299 | 320 | SINE (Alu) | LOC105369688 | Intron | 2 |
CP068266.2:20 732 559 | 319 | SINE (Alu) | SLCO1B3 | Intron | 2 |
CP068266.2:21 811 737 | 332 | SINE (Alu) | ABCC9 | Intron | 2 |
CP068266.2:24 169 786 | 315 | SINE (Alu) | SOX5 | Intron | 2 |
CP068266.2:24 236 442 | 322 | SINE (Alu) | SOX5 | Intron | 2 |
CP068266.2:25 390 110 | 469 | LINE (L1) | LMNTD1 | Intron | 2 |
CP068266.2:26 657 340 | 156 | Retroposon (SVA) | ITPR2 | Intron | 2 |
CP068266.2:26 657 758 | 146 | Retroposon (SVA) | ITPR2 | Intron | 2 |
CP068266.2:27 153 024 | 326 | SINE (Alu) | STK38L | Intron | 2 |
CP068266.2:27 583 597 | 314 | SINE (Alu) | MRPS35 | Intron | 2 |
CP068266.2:27 945 245 | 6 056 | LINE (L1) | LOC105369710 | Intron | 2 |
CP068266.2:28 158 038 | 314 | SINE (Alu) | CCDC91 | Intron | 2 |
CP068266.2:29 543 251 | 312 | SINE (Alu) | TMTC1 | Intron | 2 |
CP068266.2:30 189 897 | 307 | SINE (Alu) | LOC105369718 | Intron | 2 |
CP068266.2:32 081 943 | 332 | SINE (Alu) | BICD1 | Intron | 2 |
CP068266.2:32 146 334 | 317 | SINE (Alu) | BICD1 | Intron | 2 |
CP068266.2:40 391 171 | 305 | SINE (Alu) | MUC19 | Intron | 2 |
CP068266.2:41 225 228 | 311 | SINE (Alu) | PDZRN4 | Intron | 2 |
CP068266.2:41 239 964 | 344 | LINE (L1) | PDZRN4 | Intron | 2 |
CP068266.2:50 567 396 | 3 142 | Retroposon (SVA) | DIP2B | Intron | 2 |
CP068266.2:50 739 488 | 307 | SINE (Alu) | ATF1 | Intron | 2 |
CP068266.2:53 648 539 | 314 | SINE (Alu) | ATP5MC2 | Promoter | 2 |
CP068266.2:56 751 564 | 48 | Retroposon (SVA) | HSD17B6 | Intron | 1 |
CP068266.2:64 182 833 | 84 | LINE (L1) | KICS2 | Intron | 2 |
CP068266.2:64 720 062 | 177 | SINE (Alu) | GNS | Intron | 2 |
CP068266.2:66 597 279 | 329 | SINE (Alu) | GRIP1 | Intron | 2 |
CP068266.2:69 562 698 | 343 | SINE (Alu) | MIR3913-2 | Promoter | 2 |
CP068266.2:71 111 190 | 320 | SINE (Alu) | TSPAN8 | Intron | 2 |
CP068266.2:77 981 522 | 327 | SINE (Alu) | NAV3 | Intron | 2 |
CP068266.2:84 069 393 | 314 | SINE (Alu) | LOC107984536 | Intron | 2 |
CP068266.2:94 256 702 | 319 | SINE (Alu) | PLXNC1 | Intron | 2 |
CP068266.2:95 818 964 | 2 729 | Retroposon (SVA) | SNRPF-DT | Intron | 2 |
CP068266.2:101 445 294 | 2 736 | Retroposon (SVA) | SPIC | Intron | 2 |
CP068266.2:101 881 504 | 101 | SINE (Alu) | DRAM1 | Intron | 2 |
CP068266.2:103 861 548 | 325 | SINE (Alu) | TTC41P | Intron | 2 |
CP068266.2:104 285 275 | 95 | Retroposon (SVA) | TXNRD1 | Intron | 1 |
CP068266.2:104 884 820 | 186 | SINE (Alu) | SLC41A2 | Intron | 2 |
CP068266.2:105 341 485 | 313 | SINE (Alu) | LOC105369957 | Intron | 2 |
CP068266.2:116 714 500 | 170 | SINE (Alu) | SPRING1 | Intron | 2 |
CP068266.2:117 736 378 | 3 759 | LINE (L1) | KSR2 | Intron | 2 |
CP068266.2:121 990 178 | 439 | Retroposon (SVA) | CFAP251 | Intron | 2 |
CP068266.2:122 233 522 | 78 | SINE (Alu) | VPS33A | Intron | 2 |
CP068266.2:122 521 590 | 324 | SINE (Alu) | KNTC1 | Promoter | 2 |
CP068266.2:122 521 590 | 324 | SINE (Alu) | RSRC2 | Intron | 2 |
CP068266.2:124 855 294 | 308 | SINE (Alu) | SCARB1 | Intron | 2 |
CP068266.2:126 414 081 | 330 | SINE (Alu) | LINC02825 | Intron | 2 |
CP068266.2:126 429 324 | 326 | SINE (Alu) | LINC02825 | Intron | 2 |
CP068266.2:126 723 341 | 318 | SINE (Alu) | LINC02824 | Intron | 2 |
CP068266.2:127 938 348 | 319 | SINE (Alu) | LINC00508 | Intron | 2 |
CP068266.2:132 986 417 | 124 | SINE (Alu) | ZNF605 | Intron | 2 |
CP068266.2:132 990 676 | 259 | LTR (ERV1) | ZNF605 | Intron | 1 |
CP068266.2:943 694 | 322 | SINE (Alu) | RAD52 | Intron | 2 |
CP068267.2:2 838 941 | 123 | SINE (Alu) | KCNQ1 | Intron | 2 |
CP068267.2:4 795 490 | 332 | SINE (Alu) | MMP26 | Intron | 2 |
CP068267.2:4 952 227 | 232 | SINE (Alu) | MMP26 | Intron | 2 |
CP068267.2:5 010 999 | 301 | SINE (Alu) | MMP26 | Intron | 2 |
CP068267.2:7 389 915 | 328 | SINE (Alu) | SYT9 | Intron | 2 |
CP068267.2:7 466 060 | 322 | SINE (Alu) | SYT9 | Intron | 2 |
CP068267.2:7 649 825 | 321 | SINE (Alu) | LOC105376535 | Promoter | 2 |
CP068267.2:7 649 825 | 321 | SINE (Alu) | PPFIBP2 | Intron | 2 |
CP068267.2:8 949 899 | 319 | SINE (Alu) | DENND2B | Intron | 2 |
CP068267.2:9 857 725 | 325 | SINE (Alu) | SBF2-AS1 | Intron | 2 |
CP068267.2:14 422 370 | 315 | SINE (Alu) | RRAS2 | Intron | 2 |
CP068267.2:16 096 394 | 322 | SINE (Alu) | SOX6 | Intron | 2 |
CP068267.2:17 004 792 | 124 | Retroposon (SVA) | PLEKHA7 | Intron | 2 |
CP068267.2:17 004 795 | 253 | Retroposon (SVA) | PLEKHA7 | Intron | 2 |
CP068267.2:17 272 181 | 312 | SINE (Alu) | PIK3C2A | Intron | 2 |
CP068267.2:22 361 771 | 123 | LINE (L1) | ANO5 | Intron | 2 |
CP068267.2:22 364 248 | 1 119 | LINE (L1) | ANO5 | Intron | 1 |
CP068267.2:25 682 675 | 343 | SINE (Alu) | LINC02699 | Intron | 2 |
CP068267.2:26 412 603 | 299 | SINE (Alu) | ANO3 | Intron | 2 |
CP068267.2:27 776 457 | 330 | LTR (ERV1) | BDNF-AS | Intron | 2 |
CP068267.2:31 266 976 | 315 | SINE (Alu) | DCDC1 | Intron | 2 |
CP068267.2:33 652 002 | 321 | SINE (Alu) | KIAA1549L | Intron | 2 |
CP068267.2:33 790 935 | 317 | SINE (Alu) | KIAA1549L | Intron | 2 |
CP068267.2:34 364 873 | 324 | SINE (Alu) | ABTB2 | Intron | 2 |
CP068267.2:36 284 959 | 76 | Retroposon (SVA) | LDLRAD3 | Intron | 2 |
CP068267.2:41 292 029 | 312 | LTR (ERV1) | LRRC4C | Intron | 2 |
CP068267.2:47 253 984 | 174 | Retroposon (SVA) | CSTPP1 | Intron | 2 |
CP068267.2:47 950 030 | 291 | SINE (Alu) | NUP160 | Intron | 2 |
CP068267.2:49 811 499 | 300 | SINE (Alu) | GRM5P1 | Intron | 2 |
CP068267.2:58 991 318 | 330 | SINE (Alu) | LOC283194 | Intron | 2 |
CP068267.2:60 485 034 | 78 | LINE (L1) | MS4A13 | Intron | 2 |
CP068267.2:63 882 702 | 258 | LINE (L1) | MARK2 | Intron | 2 |
CP068267.2:74 199 847 | 262 | SINE (Alu) | P4HA3 | Intron | 2 |
CP068267.2:75 339 541 | 77 | Retroposon (SVA) | RPS3 | Intron | 2 |
CP068267.2:77 212 142 | 313 | SINE (Alu) | GDPD4 | Intron | 2 |
CP068267.2:78 812 746 | 73 | Retroposon (SVA) | TENM4 | Intron | 2 |
CP068267.2:79 061 406 | 55 | LTR (ERVL) | TENM4 | Intron | 2 |
CP068267.2:89 743 813 | 56 | LINE (L1) | LOC642414 | Intron | 1 |
CP068267.2:96 295 863 | 337 | SINE (Alu) | MAML2 | Intron | 2 |
CP068267.2:96 505 971 | 317 | SINE (Alu) | JRKL-AS1 | Intron | 2 |
CP068267.2:99 867 914 | 326 | SINE (Alu) | CNTN5 | Intron | 2 |
CP068267.2:101 555 768 | 326 | SINE (Alu) | TRPC6 | Intron | 2 |
CP068267.2:102 479 727 | 220 | SINE (Alu) | LOC124902740 | Intron | 2 |
CP068267.2:104 919 973 | 321 | SINE (Alu) | CASP4LP | Intron | 2 |
CP068267.2:106 732 179 | 292 | SINE (Alu) | GUCY1A2 | Intron | 2 |
CP068267.2:110 116 231 | 329 | SINE (Alu) | ZC3H12C | Intron | 2 |
CP068267.2:114 530 381 | 71 | SINE (Alu) | NXPE2 | Intron | 2 |
CP068267.2:118 715 549 | 133 | SINE (Alu) | LOC105369519 | Intron | 2 |
CP068267.2:130 127 233 | 449 | Retroposon (SVA) | APLP2 | Intron | 1 |
CP068267.2:130 214 060 | 127 | LTR (ERVL) | ST14 | Intron | 2 |
CP068267.2:473 330 | 320 | SINE (Alu) | ANO9 | Intron | 2 |
CP068268.2:3 530 702 | 314 | SINE (Alu) | LOC105376360 | Intron | 2 |
CP068268.2:4 863 983 | 71 | LINE (L1) | AKR1E2 | Intron | 2 |
CP068268.2:6 056 097 | 479 | Retroposon (SVA) | IL2RA | Intron | 2 |
CP068268.2:6 229 202 | 313 | SINE (Alu) | PFKFB3 | Intron | 2 |
CP068268.2:9 873 493 | 325 | SINE (Alu) | LINC02663 | Intron | 2 |
CP068268.2:10 462 177 | 321 | SINE (Alu) | CELF2-DT | Intron | 2 |
CP068268.2:10 778 281 | 170 | SINE (Alu) | CELF2 | Intron | 2 |
CP068268.2:11 954 252 | 322 | SINE (Alu) | UPF2 | Intron | 2 |
CP068268.2:14 722 876 | 64 | LINE (L1) | FAM107B | Intron | 2 |
CP068268.2:25 217 221 | 334 | SINE (Alu) | GPR158 | Intron | 2 |
CP068268.2:25 961 851 | 320 | SINE (Alu) | MYO3A | Intron | 2 |
CP068268.2:26 090 720 | 316 | SINE (Alu) | MYO3A | Intron | 2 |
CP068268.2:26 503 688 | 303 | SINE (Alu) | APBB1IP | Intron | 2 |
CP068268.2:27 326 370 | 448 | Retroposon (SVA) | ODAD2P1 | Intron | 2 |
CP068268.2:29 454 890 | 569 | LINE (L1) | SVIL-AS1 | Intron | 2 |
CP068268.2:29 760 714 | 173 | SINE (Alu) | SVIL | Intron | 2 |
CP068268.2:30 638 183 | 125 | SINE (Alu) | LYZL2 | Intron | 2 |
CP068268.2:34 285 274 | 315 | SINE (Alu) | PARD3 | Intron | 2 |
CP068268.2:37 665 828 | 300 | SINE (Alu) | LOC102724533 | Intron | 2 |
CP068268.2:43 632 105 | 324 | SINE (Alu) | LOC105378269 | Promoter | 2 |
CP068268.2:47 533 855 | 322 | SINE (Alu) | SHLD2P1 | Intron | 2 |
CP068268.2:49 919 167 | 314 | SINE (Alu) | VSTM4 | Intron | 2 |
CP068268.2:53 450 889 | 81 | LTR (ERVL) | LOC105378305 | Intron | 2 |
CP068268.2:55 607 393 | 312 | SINE (Alu) | PCDH15 | Intron | 2 |
CP068268.2:59 611 491 | 317 | SINE (Alu) | BICC1 | Intron | 2 |
CP068268.2:60 550 872 | 127 | Retroposon (SVA) | SLC16A9 | Intron | 2 |
CP068268.2:62 840 679 | 169 | SINE (Alu) | ARID5B | Intron | 2 |
CP068268.2:66 534 377 | 326 | SINE (Alu) | LINC01515 | Intron | 2 |
CP068268.2:67 440 301 | 327 | SINE (Alu) | CTNNA3 | Intron | 2 |
CP068268.2:69 393 576 | 314 | SINE (Alu) | SLC25A16 | Intron | 2 |
CP068268.2:70 106 721 | 316 | SINE (Alu) | HKDC1 | Intron | 2 |
CP068268.2:71 715 465 | 316 | SINE (Alu) | SGPL1 | Intron | 2 |
CP068268.2:72 303 748 | 327 | SINE (Alu) | CDH23 | Intron | 2 |
CP068268.2:76 207 675 | 48 | Retroposon (SVA) | ZNF503-AS1 | Intron | 2 |
CP068268.2:85 102 012 | 321 | SINE (Alu) | LRIT2 | Intron | 2 |
CP068268.2:86 896 322 | 309 | SINE (Alu) | GRID1 | Intron | 2 |
CP068268.2:87 790 483 | 326 | SINE (Alu) | BMPR1A | Intron | 2 |
CP068268.2:88 939 111 | 319 | SINE (Alu) | LOC105378414 | Intron | 2 |
CP068268.2:91 338 874 | 313 | SINE (Alu) | LINC02653 | Intron | 2 |
CP068268.2:91 351 314 | 317 | SINE (Alu) | LINC02653 | Intron | 2 |
CP068268.2:95 704 117 | 395 | LINE (L1) | CYP2C19 | Intron | 2 |
CP068268.2:96 787 855 | 315 | SINE (Alu) | CC2D2B | Intron | 2 |
CP068268.2:99 145 741 | 328 | SINE (Alu) | LOXL4 | Intron | 2 |
CP068268.2:99 427 122 | 153 | SINE (Alu) | HPSE2 | Intron | 2 |
CP068268.2:100 722 705 | 223 | Retroposon (SVA) | ABCC2 | Intron | 2 |
CP068268.2:102 771 351 | 303 | SINE (Alu) | ARMH3 | Intron | 2 |
CP068268.2:102 861 010 | 322 | SINE (Alu) | ARMH3 | Intron | 2 |
CP068268.2:102 921 216 | 141 | Retroposon (SVA) | ARMH3 | Intron | 2 |
CP068268.2:104 225 372 | 312 | SINE (Alu) | PCGF6 | Intron | 2 |
CP068268.2:105 985 932 | 312 | SINE (Alu) | SORCS3 | Intron | 2 |
CP068268.2:107 018 348 | 141 | SINE (Alu) | LOC105378469 | Intron | 2 |
CP068268.2:111 134 875 | 308 | SINE (Alu) | MXI1 | Intron | 2 |
CP068268.2:113 205 090 | 311 | SINE (Alu) | GUCY2GP | Intron | 2 |
CP068268.2:116 140 819 | 319 | SINE (Alu) | ATRNL1 | Intron | 2 |
CP068268.2:119 905 013 | 320 | SINE (Alu) | LINC03036 | Intron | 2 |
CP068268.2:121 742 443 | 62 | LTR (ERV1) | WDR11-DT | Intron | 2 |
CP068268.2:123 679 345 | 333 | SINE (Alu) | LOC124900290 | Intron | 2 |
CP068268.2:128 286 207 | 314 | SINE (Alu) | DOCK1 | Intron | 2 |
CP068268.2:131 025 575 | 97 | LINE (L1) | C10orf143 | Intron | 2 |
CP068269.2:6 295 538 | 711 | LINE (L1) | LOC107987046 | Intron | 2 |
CP068269.2:6 885 377 | 312 | SINE (Alu) | KDM4C | Intron | 2 |
CP068269.2:9 145 491 | 320 | SINE (Alu) | PTPRD | Intron | 2 |
CP068269.2:10 470 785 | 314 | SINE (Alu) | PTPRD | Intron | 2 |
CP068269.2:14 642 209 | 105 | LINE (L1) | ZDHHC21 | Intron | 2 |
CP068269.2:19 378 518 | 95 | SINE (Alu) | DENND4C | Intron | 2 |
CP068269.2:28 208 722 | 312 | SINE (Alu) | LINGO2 | Intron | 2 |
CP068269.2:32 330 851 | 226 | SINE (Alu) | LOC107987059 | Intron | 2 |
CP068269.2:35 038 160 | 63 | LINE (L1) | LOC105376025 | Intron | 2 |
CP068269.2:36 668 044 | 309 | SINE (Alu) | MELK | Intron | 2 |
CP068269.2:37 214 016 | 317 | SINE (Alu) | ZCCHC7 | Intron | 2 |
CP068269.2:81 331 129 | 317 | SINE (Alu) | TJP2 | Intron | 2 |
CP068269.2:82 950 586 | 315 | SINE (Alu) | TRPM3 | Intron | 2 |
CP068269.2:82 997 613 | 313 | SINE (Alu) | TRPM3 | Intron | 2 |
CP068269.2:83 123 285 | 132 | SINE (Alu) | TRPM3 | Intron | 2 |
CP068269.2:84 767 523 | 313 | SINE (Alu) | TMC1 | Intron | 2 |
CP068269.2:84 951 633 | 333 | SINE (Alu) | TMC1 | Intron | 2 |
CP068269.2:84 957 291 | 97 | Retroposon (SVA) | TMC1 | Intron | 2 |
CP068269.2:88 222 516 | 455 | Retroposon (SVA) | PCSK5 | Intron | 2 |
CP068269.2:97 437 226 | 307 | SINE (Alu) | LOC105376119 | Intron | 2 |
CP068269.2:99 911 985 | 299 | Retroposon (SVA) | LOC124902198 | Intron | 2 |
CP068269.2:102 597 254 | 306 | SINE (Alu) | LINC01508 | Intron | 2 |
CP068269.2:104 997 505 | 135 | Retroposon (SVA) | ANKRD19P | Intron | 1 |
CP068269.2:106 136 047 | 250 | SINE (Alu) | LOC124902216 | Intron | 2 |
CP068269.2:106 667 387 | 318 | SINE (Alu) | LOC107987100 | Intron | 2 |
CP068269.2:112 443 781 | 81 | SINE (Alu) | INVS | Intron | 2 |
CP068269.2:117 159 335 | 727 | Retroposon (SVA) | CT70 | Intron | 2 |
CP068269.2:122 734 404 | 330 | SINE (Alu) | SVEP1 | Intron | 2 |
CP068269.2:124 311 519 | 315 | SINE (Alu) | SUSD1 | Intron | 2 |
CP068269.2:124 686 226 | 173 | Retroposon (SVA) | KIAA1958 | Intron | 1 |
CP068269.2:129 033 833 | 203 | Retroposon (SVA) | LOC105376239 | Intron | 2 |
CP068269.2:141 137 397 | 133 | SINE (Alu) | PHYHD1 | Intron | 2 |
CP068269.2:144 740 730 | 2 980 | LINE (L1) | CFAP77 | Intron | 2 |
CP068269.2:146 110 857 | 225 | Retroposon (SVA) | VAV2 | Intron | 2 |
CP068270.2:3 524 026 | 328 | SINE (Alu) | CSMD1 | Intron | 2 |
CP068270.2:4 117 692 | 328 | SINE (Alu) | CSMD1 | Intron | 2 |
CP068270.2:4 348 133 | 94 | LINE (L1) | CSMD1 | Intron | 2 |
CP068270.2:5 725 123 | 602 | LINE (L1) | LOC105377795 | Intron | 2 |
CP068270.2:10 137 743 | 312 | SINE (Alu) | TNKS | Intron | 2 |
CP068270.2:10 681 511 | 321 | SINE (Alu) | ERI1 | Intron | 2 |
CP068270.2:14 383 880 | 321 | SINE (Alu) | SGCZ | Intron | 2 |
CP068270.2:15 957 256 | 323 | SINE (Alu) | TUSC3 | Intron | 2 |
CP068270.2:17 675 688 | 328 | SINE (Alu) | MTMR7 | Intron | 2 |
CP068270.2:28 963 145 | 129 | LINE (L1) | EXTL3 | Promoter | 2 |
CP068270.2:28 963 145 | 129 | LINE (L1) | EXTL3 | Intron | 2 |
CP068270.2:32 796 257 | 197 | LINE (L1) | NRG1 | Intron | 2 |
CP068270.2:34 175 409 | 284 | SINE (Alu) | LOC105379364 | Intron | 2 |
CP068270.2:39 283 681 | 313 | SINE (Alu) | ADAM9 | Intron | 2 |
CP068270.2:42 456 695 | 309 | SINE (Alu) | PLAT | Intron | 2 |
CP068270.2:48 487 704 | 322 | SINE (Alu) | LOC107986941 | Intron | 2 |
CP068270.2:52 201 376 | 318 | SINE (Alu) | PCMTD1 | Intron | 2 |
CP068270.2:54 436 680 | 313 | SINE (Alu) | LYPLA1-TCEA1 | Intron | 2 |
CP068270.2:55 866 231 | 315 | SINE (Alu) | XKR4 | Intron | 2 |
CP068270.2:60 716 533 | 315 | SINE (Alu) | LOC105375864 | Intron | 2 |
CP068270.2:61 037 962 | 321 | SINE (Alu) | RAB2A | Intron | 2 |
CP068270.2:62 855 980 | 322 | SINE (Alu) | NKAIN3 | Intron | 2 |
CP068270.2:66 088 341 | 73 | Retroposon (SVA) | MTFR1 | Intron | 2 |
CP068270.2:66 658 372 | 174 | Retroposon (SVA) | LOC102724687 | Intron | 2 |
CP068270.2:74 052 032 | 168 | SINE (Alu) | STAU2 | Intron | 2 |
CP068270.2:74 150 241 | 341 | SINE (Alu) | STAU2 | Intron | 2 |
CP068270.2:80 270 047 | 319 | SINE (Alu) | LOC101927040 | Intron | 2 |
CP068270.2:87 184 808 | 320 | SINE (Alu) | PSKH2 | Intron | 2 |
CP068270.2:96 503 803 | 232 | SINE (Alu) | CFAP418-AS1 | Intron | 1 |
CP068270.2:96 770 262 | 325 | SINE (Alu) | CFAP418-AS1 | Intron | 2 |
CP068270.2:99 578 329 | 325 | SINE (Alu) | STK3 | Intron | 2 |
CP068270.2:102 509 | 314 | SINE (Alu) | LOC124902052 | Intron | 2 |
CP068270.2:104 056 682 | 244 | Retroposon (SVA) | MAILR | Intron | 2 |
CP068270.2:106 786 176 | 317 | SINE (Alu) | ZFPM2 | Intron | 2 |
CP068270.2:107 627 313 | 325 | SINE (Alu) | OXR1 | Intron | 2 |
CP068270.2:107 844 447 | 325 | SINE (Alu) | OXR1 | Intron | 2 |
CP068270.2:110 217 896 | 320 | SINE (Alu) | TRHR | Intron | 2 |
CP068270.2:110 465 612 | 299 | SINE (Alu) | ENY2 | Intron | 2 |
CP068270.2:117 806 203 | 719 | Retroposon (SVA) | EIF3H | Intron | 2 |
CP068270.2:119 563 257 | 310 | SINE (Alu) | SAMD12 | Intron | 2 |
CP068270.2:120 917 422 | 232 | SINE (Alu) | TAF2 | Intron | 2 |
CP068270.2:121 797 875 | 317 | SINE (Alu) | SNTB1 | Intron | 2 |
CP068270.2:122 849 197 | 321 | SINE (Alu) | LOC124906789 | Intron | 2 |
CP068270.2:126 458 371 | 317 | SINE (Alu) | NSMCE2 | Intron | 2 |
CP068270.2:126 461 172 | 353 | SINE (Alu) | NSMCE2 | Intron | 2 |
CP068270.2:132 253 249 | 316 | SINE (Alu) | LOC105375760 | Intron | 1 |
CP068270.2:132 282 389 | 312 | SINE (Alu) | LOC105375760 | Intron | 2 |
CP068270.2:133 053 370 | 323 | SINE (Alu) | EFR3A | Intron | 2 |
CP068270.2:135 985 556 | 112 | LINE (CR1) | LOC101927845 | Intron | 2 |
CP068270.2:137 820 678 | 330 | SINE (Alu) | LINC02055 | Intron | 2 |
CP068271.2:2 382 169 | 77 | Retroposon (SVA) | SNX8 | Intron | 2 |
CP068271.2:2 537 743 | 337 | SINE (Alu) | CHST12 | Intron | 2 |
CP068271.2:2 674 652 | 107 | SINE (Alu) | IQCE | Intron | 2 |
CP068271.2:6 790 042 | 96 | Retroposon (SVA) | LOC124901583 | Intron | 2 |
CP068271.2:8 616 432 | 317 | SINE (Alu) | NXPH1 | Intron | 2 |
CP068271.2:15 262 062 | 60 | LTR (ERV1) | AGMO | Intron | 2 |
CP068271.2:18 412 782 | 280 | SINE (Alu) | HDAC9 | Intron | 2 |
CP068271.2:20 330 965 | 326 | SINE (Alu) | MACC1 | Intron | 2 |
CP068271.2:23 765 393 | 312 | SINE (Alu) | CCDC126 | Intron | 2 |
CP068271.2:23 776 953 | 125 | Retroposon (SVA) | CCDC126 | Intron | 2 |
CP068271.2:26 303 990 | 118 | LINE (L1) | NFE2L3 | Intron | 2 |
CP068271.2:27 880 171 | 336 | SINE (Alu) | TAX1BP1 | Intron | 2 |
CP068271.2:33 334 398 | 1 407 | LINE (L1) | BBS9 | Intron | 2 |
CP068271.2:42 668 469 | 321 | SINE (Alu) | LOC105375250 | Promoter | 2 |
CP068271.2:43 532 806 | 252 | SINE (Alu) | HECW1 | Intron | 2 |
CP068271.2:45 911 340 | 323 | SINE (Alu) | SEPTIN7P2 | Intron | 2 |
CP068271.2:48 018 072 | 323 | SINE (Alu) | PKD1L1 | Intron | 2 |
CP068271.2:56 180 856 | 324 | SINE (Alu) | PSPH | Intron | 2 |
CP068271.2:56 181 463 | 61 | SINE (Alu) | PSPH | Intron | 1 |
CP068271.2:75 037 348 | 270 | Retroposon (SVA) | METTL27 | Intron | 1 |
CP068271.2:76 011 796 | 192 | SINE (Alu) | GTF2IRD2 | Intron | 2 |
CP068271.2:77 895 813 | 299 | SINE (Alu) | LINC03009 | Intron | 2 |
CP068271.2:79 582 547 | 322 | SINE (Alu) | MAGI2 | Intron | 2 |
CP068271.2:82 045 199 | 330 | SINE (Alu) | SEMA3C | Intron | 2 |
CP068271.2:83 623 827 | 326 | SINE (Alu) | CACNA2D1 | Intron | 2 |
CP068271.2:84 052 406 | 314 | SINE (Alu) | PCLO | Intron | 2 |
CP068271.2:85 626 331 | 317 | SINE (Alu) | SEMA3A | Intron | 2 |
CP068271.2:90 466 173 | 340 | SINE (Alu) | ZNF804B | Intron | 2 |
CP068271.2:91 992 920 | 206 | Retroposon (SVA) | CDK14 | Intron | 2 |
CP068271.2:96 385 565 | 327 | SINE (Alu) | PPP1R9A | Intron | 2 |
CP068271.2:100 478 927 | 331 | SINE (Alu) | MYH16 | Intron | 2 |
CP068271.2:102 681 693 | 2 780 | Retroposon (SVA) | COL26A1 | Intron | 2 |
CP068271.2:103 867 427 | 84 | SINE (Alu) | POLR2J3-UPK3BL2 | Intron | 2 |
CP068271.2:104 162 973 | 331 | SINE (Alu) | FAM185A | Intron | 2 |
CP068271.2:106 264 512 | 103 | SINE (Alu) | LOC101927902 | Intron | 2 |
CP068271.2:106 569 809 | 323 | SINE (Alu) | SRPK2 | Intron | 2 |
CP068271.2:109 361 785 | 120 | SINE (Alu) | LAMB4 | Intron | 2 |
CP068271.2:112 163 030 | 96 | LINE (L1) | IMMP2L | Intron | 2 |
CP068271.2:115 628 405 | 311 | SINE (Alu) | FOXP2 | Intron | 2 |
CP068271.2:118 437 551 | 269 | SINE (Alu) | ST7 | Intron | 2 |
CP068271.2:119 031 590 | 319 | SINE (Alu) | LOC105375469 | Intron | 2 |
CP068271.2:119 758 768 | 316 | SINE (Alu) | LOC105375471 | Intron | 2 |
CP068271.2:124 871 255 | 308 | SINE (Alu) | NDUFA5 | Intron | 2 |
CP068271.2:127 551 027 | 333 | SINE (Alu) | LOC105375488 | Promoter | 2 |
CP068271.2:127 551 027 | 333 | SINE (Alu) | LOC105375488 | Intron | 2 |
CP068271.2:132 541 792 | 144 | SINE (Alu) | MKLN1 | Intron | 2 |
CP068271.2:133 487 650 | 328 | SINE (Alu) | PLXNA4 | Intron | 2 |
CP068271.2:135 973 338 | 419 | LINE (L1) | BPGM | Intron | 2 |
CP068271.2:136 047 537 | 322 | SINE (Alu) | LOC124901750 | Intron | 2 |
CP068271.2:136 812 007 | 329 | SINE (Alu) | CNOT4 | Intron | 2 |
CP068271.2:138 459 440 | 311 | SINE (Alu) | LOC349160 | Intron | 2 |
CP068271.2:141 676 142 | 216 | Retroposon (SVA) | SLC37A3 | Intron | 1 |
CP068271.2:141 951 322 | 316 | SINE (Alu) | DENND2A | Intron | 2 |
CP068271.2:142 627 896 | 318 | SINE (Alu) | TMEM178B | Intron | 2 |
CP068271.2:145 832 167 | 61 | LTR (ERV1) | TPK1 | Intron | 2 |
CP068271.2:145 866 395 | 139 | LINE (L1) | TPK1 | Promoter | 2 |
CP068271.2:145 866 395 | 139 | LINE (L1) | TPK1 | Intron | 2 |
CP068271.2:149 591 887 | 134 | SINE (Alu) | CNTNAP2 | Intron | 2 |
CP068271.2:149 923 445 | 134 | SINE (Alu) | CUL1 | Intron | 2 |
CP068271.2:151 116 815 | 318 | SINE (Alu) | ACTR3C | Intron | 2 |
CP068271.2:151 376 999 | 50 | Retroposon (SVA) | ACTR3C | Intron | 2 |
CP068271.2:151 854 516 | 89 | SINE (Alu) | LOC124901774 | Intron | 2 |
CP068271.2:152 200 515 | 52 | LTR (ERVK) | ATG9B | Intron | 2 |
CP068271.2:152 533 889 | 143 | SINE (Alu) | NUB1 | Intron | 2 |
CP068271.2:155 444 348 | 311 | SINE (Alu) | DPP6 | Intron | 2 |
CP068271.2:155 766 178 | 328 | SINE (Alu) | DPP6 | Intron | 2 |
CP068271.2:160 034 958 | 126 | SINE (Alu) | ESYT2 | Intron | 2 |
CP068272.2:2 841 255 | 303 | SINE (Alu) | SERPINB6 | Promoter | 2 |
CP068272.2:5 217 730 | 320 | SINE (Alu) | FARS2 | Intron | 2 |
CP068272.2:7 310 938 | 81 | LTR (ERV1) | LOC102724234 | Intron | 2 |
CP068272.2:9 939 215 | 312 | SINE (Alu) | OFCC1 | Intron | 2 |
CP068272.2:10 902 109 | 135 | SINE (Alu) | ELOVL2 | Intron | 2 |
CP068272.2:13 394 505 | 329 | SINE (Alu) | RPS4XP7 | Promoter | 2 |
CP068272.2:19 027 502 | 323 | SINE (Alu) | LOC101928519 | Intron | 2 |
CP068272.2:20 041 064 | 314 | SINE (Alu) | MBOAT1 | Intron | 2 |
CP068272.2:28 879 239 | 100 | SINE (Alu) | ZNF311 | Intron | 2 |
CP068272.2:30 680 491 | 159 | LTR (ERV1) | LINC00243 | Intron | 2 |
CP068272.2:31 324 347 | 313 | SINE (Alu) | HCG26 | Promoter | 2 |
CP068272.2:31 351 684 | 173 | SINE (Alu) | MICB | Intron | 2 |
CP068272.2:32 343 351 | 293 | SINE (Alu) | LOC124905397 | Promoter | 2 |
CP068272.2:32 412 812 | 309 | SINE (Alu) | HLA-DRB1 | Intron | 2 |
CP068272.2:32 415 894 | 307 | SINE (Alu) | HLA-DRB1 | Intron | 1 |
CP068272.2:32 423 285 | 1 113 | LTR (ERVK) | HLA-DRB1 | Promoter | 2 |
CP068272.2:33 068 433 | 330 | SINE (Alu) | LOC105375022 | Promoter | 2 |
CP068272.2:34 221 295 | 49 | Retroposon (SVA) | RPS10-NUDT3 | Intron | 1 |
CP068272.2:34 229 514 | 329 | SINE (Alu) | RPS10-NUDT3 | Intron | 2 |
CP068272.2:38 746 505 | 50 | LTR (ERV1) | DNAH8 | Intron | 2 |
CP068272.2:38 778 843 | 313 | SINE (Alu) | DNAH8 | Intron | 2 |
CP068272.2:42 430 462 | 160 | SINE (Alu) | UBR2 | Intron | 2 |
CP068272.2:42 896 868 | 322 | SINE (Alu) | KLC4 | Intron | 2 |
CP068272.2:43 181 094 | 66 | LINE (L1) | ZNF318 | Intron | 2 |
CP068272.2:43 757 249 | 316 | SINE (Alu) | LINC01512 | Intron | 2 |
CP068272.2:43 979 896 | 980 | Retroposon (SVA) | TMEM63B | Intron | 2 |
CP068272.2:45 127 498 | 323 | SINE (Alu) | SUPT3H | Intron | 2 |
CP068272.2:45 944 958 | 329 | SINE (Alu) | CLIC5 | Intron | 2 |
CP068272.2:51 717 831 | 6 031 | LINE (L1) | PKHD1 | Intron | 2 |
CP068272.2:53 584 806 | 282 | SINE (Alu) | LOC124901334 | Intron | 2 |
CP068272.2:53 623 893 | 312 | SINE (Alu) | LOC124901333 | Intron | 2 |
CP068272.2:54 692 012 | 140 | SINE (Alu) | FAM83B | Intron | 2 |
CP068272.2:56 735 169 | 2 587 | Retroposon (SVA) | DST | Intron | 2 |
CP068272.2:62 724 632 | 132 | SINE (Alu) | KHDRBS2 | Intron | 2 |
CP068272.2:65 272 540 | 191 | SINE (Alu) | EYS | Intron | 2 |
CP068272.2:65 457 749 | 91 | LINE (L1) | EYS | Intron | 2 |
CP068272.2:65 763 014 | 327 | SINE (Alu) | EYS | Intron | 2 |
CP068272.2:66 607 855 | 308 | SINE (Alu) | EYS | Intron | 2 |
CP068272.2:68 497 032 | 322 | SINE (Alu) | LOC105377842 | Intron | 2 |
CP068272.2:70 300 658 | 75 | Retroposon (SVA) | ADGRB3 | Intron | 2 |
CP068272.2:76 425 221 | 316 | SINE (Alu) | COX7A2 | Intron | 2 |
CP068272.2:76 483 634 | 49 | SINE (Alu) | FILIP1 | Intron | 2 |
CP068272.2:78 387 367 | 308 | SINE (Alu) | LOC101928570 | Intron | 2 |
CP068272.2:78 831 815 | 304 | SINE (Alu) | MEI4 | Intron | 2 |
CP068272.2:78 884 409 | 320 | SINE (Alu) | MEI4 | Intron | 2 |
CP068272.2:79 310 806 | 294 | SINE (Alu) | LOC105377865 | Intron | 2 |
CP068272.2:81 765 649 | 321 | SINE (Alu) | LOC648934 | Promoter | 2 |
CP068272.2:81 765 649 | 321 | SINE (Alu) | LOC112267962 | Intron | 2 |
CP068272.2:83 853 159 | 57 | LINE (L1) | LOC105377876 | Intron | 2 |
CP068272.2:84 185 928 | 312 | SINE (Alu) | UBE3D | Intron | 2 |
CP068272.2:93 892 171 | 325 | SINE (Alu) | LINC02531 | Intron | 2 |
CP068272.2:97 741 692 | 322 | SINE (Alu) | FHL5 | Intron | 2 |
CP068272.2:102 897 809 | 329 | SINE (Alu) | GRIK2 | Intron | 2 |
CP068272.2:102 946 406 | 323 | SINE (Alu) | GRIK2 | Intron | 2 |
CP068272.2:105 950 363 | 311 | SINE (Alu) | HACE1 | Intron | 2 |
CP068272.2:111 483 984 | 310 | SINE (Alu) | METTL24 | Intron | 2 |
CP068272.2:111 583 183 | 328 | SINE (Alu) | DDO | Intron | 2 |
CP068272.2:115 410 352 | 316 | SINE (Alu) | HDAC2-AS2 | Intron | 2 |
CP068272.2:117 613 663 | 317 | SINE (Alu) | DSE | Intron | 2 |
CP068272.2:117 706 712 | 318 | SINE (Alu) | TRAPPC3L | Intron | 2 |
CP068272.2:119 490 091 | 293 | SINE (Alu) | SLC35F1 | Intron | 2 |
CP068272.2:123 028 931 | 102 | LINE (L2) | LOC105377979 | Intron | 2 |
CP068272.2:123 847 137 | 319 | SINE (Alu) | PKIB | Intron | 2 |
CP068272.2:125 365 522 | 321 | SINE (Alu) | NKAIN2 | Intron | 2 |
CP068272.2:130 609 939 | 311 | SINE (Alu) | LAMA2 | Intron | 2 |
CP068272.2:130 700 750 | 327 | SINE (Alu) | LAMA2 | Intron | 2 |
CP068272.2:131 488 431 | 283 | SINE (Alu) | SAMD3 | Intron | 2 |
CP068272.2:134 599 473 | 178 | SINE (Alu) | EYA4 | Intron | 2 |
CP068272.2:137 234 155 | 278 | SINE (Alu) | PDE7B | Intron | 2 |
CP068272.2:137 339 890 | 70 | SINE (Alu) | PDE7B | Intron | 1 |
CP068272.2:140 470 041 | 314 | SINE (Alu) | LOC102723690 | Intron | 2 |
CP068272.2:146 690 740 | 97 | LINE (L1) | EPM2A | Intron | 2 |
CP068272.2:149 677 325 | 283 | SINE (Alu) | SASH1 | Intron | 2 |
CP068272.2:150 773 902 | 135 | SINE (Alu) | GINM1 | Intron | 2 |
CP068272.2:151 002 840 | 302 | SINE (Alu) | PCMT1 | Intron | 2 |
CP068272.2:154 514 334 | 316 | SINE (Alu) | LOC105378066 | Intron | 2 |
CP068272.2:155 567 174 | 274 | SINE (Alu) | LOC105378067 | Promoter | 2 |
CP068272.2:155 567 174 | 274 | SINE (Alu) | LOC105378067 | Intron | 2 |
CP068272.2:162 273 904 | 317 | SINE (Alu) | LOC105378093 | Intron | 2 |
CP068272.2:163 617 006 | 324 | SINE (Alu) | PRKN | Intron | 2 |
CP068272.2:163 955 920 | 357 | SINE (Alu) | PRKN | Intron | 2 |
CP068272.2:169 930 528 | 324 | SINE (Alu) | SMOC2 | Intron | 2 |
CP068273.2:1 499 358 | 314 | SINE (Alu) | SDHAP3 | Intron | 2 |
CP068273.2:1 857 114 | 310 | SINE (Alu) | LOC124901165 | Intron | 2 |
CP068273.2:5 207 254 | 313 | SINE (Alu) | ADAMTS16 | Intron | 2 |
CP068273.2:13 357 466 | 56 | LINE (L1) | LOC105374660 | Intron | 2 |
CP068273.2:13 792 771 | 314 | SINE (Alu) | DNAH5 | Intron | 2 |
CP068273.2:16 655 697 | 310 | SINE (Alu) | MYO10 | Intron | 2 |
CP068273.2:20 930 728 | 316 | SINE (Alu) | LINC02241 | Intron | 2 |
CP068273.2:31 791 020 | 306 | SINE (Alu) | PDZD2 | Intron | 2 |
CP068273.2:34 235 086 | 321 | SINE (Alu) | C1QTNF3-AMACR | Intron | 2 |
CP068273.2:34 965 018 | 336 | SINE (Alu) | RAI14 | Intron | 2 |
CP068273.2:37 812 852 | 623 | Retroposon (SVA) | WDR70 | Intron | 2 |
CP068273.2:37 937 889 | 281 | SINE (Alu) | WDR70 | Intron | 2 |
CP068273.2:39 542 380 | 330 | SINE (Alu) | C9 | Intron | 2 |
CP068273.2:43 646 516 | 328 | SINE (Alu) | CCL28 | Intron | 2 |
CP068273.2:43 769 164 | 68 | LTR (ERV1) | LOC124900190 | Intron | 2 |
CP068273.2:43 770 523 | 328 | SINE (Alu) | LOC124900190 | Intron | 2 |
CP068273.2:60 039 177 | 314 | SINE (Alu) | PDE4D | Intron | 2 |
CP068273.2:66 799 023 | 345 | Retroposon (SVA) | ERBIN | Intron | 2 |
CP068273.2:69 790 093 | 651 | LINE (L1) | LOC107984116 | Intron | 2 |
CP068273.2:70 611 004 | 329 | SINE (Alu) | LOC124906514 | Intron | 2 |
CP068273.2:77 524 589 | 123 | Retroposon (SVA) | AGGF1 | Intron | 1 |
CP068273.2:78 760 230 | 285 | SINE (Alu) | AP3B1 | Intron | 2 |
CP068273.2:80 202 146 | 305 | SINE (Alu) | CMYA5 | Intron | 2 |
CP068273.2:83 675 994 | 305 | SINE (Alu) | XRCC4 | Intron | 2 |
CP068273.2:86 116 881 | 345 | SINE (Alu) | LOC105379061 | Intron | 2 |
CP068273.2:87 782 566 | 245 | SINE (Alu) | RASA1 | Intron | 2 |
CP068273.2:88 585 051 | 328 | SINE (Alu) | LOC105379070 | Intron | 2 |
CP068273.2:91 188 443 | 152 | SINE (Alu) | ADGRV1 | Intron | 2 |
CP068273.2:96 508 940 | 325 | SINE (Alu) | CAST | Intron | 2 |
CP068273.2:107 349 776 | 325 | SINE (Alu) | LINC01950 | Intron | 2 |
CP068273.2:111 869 884 | 319 | LINE (L1) | CAMK4 | Intron | 2 |
CP068273.2:111 960 940 | 189 | SINE (Alu) | CAMK4 | Intron | 2 |
CP068273.2:118 013 084 | 308 | SINE (Alu) | LINC00992 | Intron | 2 |
CP068273.2:120 200 303 | 322 | SINE (Alu) | LOC348958 | Promoter | 2 |
CP068273.2:121 151 743 | 69 | LINE (L1) | PRR16 | Intron | 2 |
CP068273.2:123 455 518 | 319 | SINE (Alu) | SNX24 | Intron | 2 |
CP068273.2:123 753 516 | 522 | LINE (L1) | TUBB8P11 | Intron | 2 |
CP068273.2:126 220 892 | 859 | LINE (L1) | LOC124901056 | Intron | 2 |
CP068273.2:137 581 808 | 233 | LINE (L2) | SPOCK1 | Intron | 2 |
CP068273.2:137 712 676 | 288 | SINE (Alu) | SPOCK1 | Intron | 2 |
CP068273.2:138 669 937 | 65 | LTR (ERV1) | BRD8 | Intron | 2 |
CP068273.2:139 924 858 | 295 | SINE (Alu) | SPATA24 | Intron | 2 |
CP068273.2:150 072 540 | 323 | SINE (Alu) | CSNK1A1 | Intron | 2 |
CP068273.2:156 439 730 | 2 480 | LINE (L1) | SGCD | Intron | 2 |
CP068273.2:159 694 188 | 322 | SINE (Alu) | RNF145 | Intron | 2 |
CP068273.2:161 129 583 | 344 | SINE (Alu) | ATP10B | Intron | 2 |
CP068273.2:171 270 546 | 84 | SINE (Alu) | KCNIP1 | Intron | 2 |
CP068273.2:176 849 119 | 127 | Retroposon (SVA) | SIMC1 | Intron | 2 |
CP068273.2:180 746 045 | 172 | SINE (Alu) | RASGEF1C | Intron | 2 |
CP068274.2:1 306 582 | 317 | SINE (Alu) | MAEA | Intron | 2 |
CP068274.2:1 318 269 | 132 | SINE (Alu) | MAEA | Intron | 2 |
CP068274.2:8 373 198 | 159 | SINE (Alu) | ACOX3 | Intron | 2 |
CP068274.2:9 950 437 | 246 | SINE (Alu) | SLC2A9 | Intron | 2 |
CP068274.2:9 954 701 | 315 | SINE (Alu) | SLC2A9 | Intron | 2 |
CP068274.2:10 696 742 | 224 | SINE (Alu) | CLNK | Intron | 2 |
CP068274.2:14 827 303 | 5 443 | LINE (L1) | LINC00504 | Intron | 2 |
CP068274.2:15 773 378 | 488 | Retroposon (SVA) | CD38 | Intron | 1 |
CP068274.2:16 374 994 | 72 | Retroposon (SVA) | LOC105374505 | Intron | 1 |
CP068274.2:19 347 230 | 325 | SINE (Alu) | LINC02438 | Intron | 2 |
CP068274.2:20 388 569 | 987 | LINE (L1) | SLIT2 | Intron | 2 |
CP068274.2:25 221 331 | 141 | LTR (ERV1) | PI4K2B | Intron | 2 |
CP068274.2:28 304 766 | 312 | SINE (Alu) | LOC105374557 | Intron | 2 |
CP068274.2:37 478 028 | 84 | Retroposon (SVA) | C4orf19 | Intron | 2 |
CP068274.2:37 501 700 | 111 | LINE (L1) | C4orf19 | Intron | 2 |
CP068274.2:38 999 419 | 279 | SINE (Alu) | TMEM156 | Intron | 2 |
CP068274.2:39 378 562 | 320 | SINE (Alu) | KLB | Intron | 2 |
CP068274.2:39 675 502 | 162 | SINE (Alu) | UBE2K | Intron | 1 |
CP068274.2:47 461 846 | 314 | SINE (Alu) | ATP10D | Intron | 2 |
CP068274.2:47 509 431 | 333 | SINE (Alu) | ATP10D | Intron | 2 |
CP068274.2:56 472 567 | 311 | SINE (Alu) | SCFD2 | Intron | 2 |
CP068274.2:57 036 762 | 318 | SINE (Alu) | LNX1 | Intron | 2 |
CP068274.2:59 545 987 | 195 | SINE (Alu) | CRACD | Intron | 2 |
CP068274.2:67 788 030 | 291 | SINE (Alu) | TECRL | Intron | 2 |
CP068274.2:72 534 968 | 321 | SINE (Alu) | UGT2B7 | Intron | 2 |
CP068274.2:72 690 165 | 266 | LINE (L1) | TUBB8P11 | Intron | 2 |
CP068274.2:73 581 961 | 186 | LINE (L1) | CSN3 | Promoter | 2 |
CP068274.2:73 581 961 | 186 | LINE (L1) | CSN3 | Intron | 2 |
CP068274.2:75 446 974 | 318 | SINE (Alu) | NPFFR2 | Intron | 2 |
CP068274.2:79 443 320 | 315 | SINE (Alu) | ART3 | Intron | 2 |
CP068274.2:80 258 529 | 49 | Retroposon (SVA) | LOC105377294 | Intron | 2 |
CP068274.2:83 303 273 | 6 044 | LINE (L1) | ANTXR2 | Intron | 2 |
CP068274.2:83 711 817 | 329 | SINE (Alu) | CFAP299 | Intron | 2 |
CP068274.2:85 588 188 | 303 | SINE (Alu) | LOC105377308 | Intron | 2 |
CP068274.2:85 803 947 | 318 | SINE (Alu) | LOC105377310 | Intron | 2 |
CP068274.2:88 878 813 | 314 | SINE (Alu) | ARHGAP24 | Intron | 2 |
CP068274.2:88 913 506 | 72 | LINE (L1) | ARHGAP24 | Intron | 2 |
CP068274.2:90 440 361 | 330 | SINE (Alu) | AFF1 | Intron | 2 |
CP068274.2:90 637 537 | 142 | SINE (Alu) | HSD17B13 | Intron | 2 |
CP068274.2:92 091 985 | 319 | SINE (Alu) | FAM13A | Intron | 2 |
CP068274.2:95 798 087 | 318 | SINE (Alu) | GRID2 | Intron | 2 |
CP068274.2:98 264 406 | 317 | SINE (Alu) | BMPR1B | Intron | 2 |
CP068274.2:99 966 112 | 318 | SINE (Alu) | LINC02267 | Intron | 2 |
CP068274.2:104 434 814 | 318 | SINE (Alu) | PPP3CA | Intron | 2 |
CP068274.2:105 736 350 | 1 885 | LINE (L1) | LOC105377621 | Intron | 2 |
CP068274.2:106 266 332 | 2 511 | LINE (L1) | SLC9B1 | Intron | 2 |
CP068274.2:107 284 829 | 623 | LTR (ERV1) | LINC02503 | Intron | 2 |
CP068274.2:107 856 593 | 318 | SINE (Alu) | CXXC4-AS1 | Intron | 2 |
CP068274.2:112 879 734 | 322 | SINE (Alu) | MCUB | Intron | 2 |
CP068274.2:122 158 905 | 317 | SINE (Alu) | SYNPO2 | Intron | 2 |
CP068274.2:124 831 133 | 180 | SINE (Alu) | LOC107986310 | Intron | 2 |
CP068274.2:137 323 693 | 306 | SINE (Alu) | PABPC4L | Intron | 2 |
CP068274.2:152 561 796 | 338 | SINE (Alu) | LINC02355 | Intron | 2 |
CP068274.2:153 984 117 | 97 | Retroposon (SVA) | LRBA | Intron | 1 |
CP068274.2:154 538 658 | 126 | Retroposon (SVA) | SH3D19 | Intron | 2 |
CP068274.2:154 743 431 | 838 | LINE (L1) | FHIP1A | Intron | 2 |
CP068274.2:157 304 320 | 318 | SINE (Alu) | LOC101927947 | Intron | 2 |
CP068274.2:157 545 206 | 74 | LTR (ERVL) | LOC101927947 | Intron | 1 |
CP068274.2:158 831 227 | 111 | SINE (Alu) | LOC105377505 | Intron | 2 |
CP068274.2:163 055 733 | 335 | SINE (Alu) | LOC107986324 | Intron | 2 |
CP068274.2:164 757 919 | 59 | LINE (L1) | FSTL5 | Intron | 2 |
CP068274.2:164 785 720 | 310 | SINE (Alu) | FSTL5 | Intron | 2 |
CP068274.2:166 928 648 | 314 | SINE (Alu) | MARCHF1 | Intron | 2 |
CP068274.2:167 460 677 | 278 | SINE (Alu) | MARCHF1 | Intron | 2 |
CP068274.2:168 615 612 | 322 | SINE (Alu) | KLHL2 | Intron | 2 |
CP068274.2:173 273 624 | 299 | SINE (Alu) | LOC105377530 | Intron | 2 |
CP068274.2:176 567 723 | 315 | SINE (Alu) | GALNT7 | Intron | 2 |
CP068274.2:177 630 266 | 311 | SINE (Alu) | CEP44 | Intron | 2 |
CP068274.2:177 952 805 | 326 | SINE (Alu) | LOC105377549 | Promoter | 2 |
CP068274.2:177 952 805 | 326 | SINE (Alu) | LOC105377549 | Intron | 2 |
CP068274.2:180 879 933 | 64 | LTR (ERV1) | AGA-DT | Intron | 2 |
CP068274.2:184 287 164 | 225 | Retroposon (SVA) | LOC105377567 | Intron | 2 |
CP068274.2:188 577 957 | 309 | SINE (Alu) | SNX25 | Intron | 2 |
CP068274.2:188 771 002 | 325 | SINE (Alu) | CFAP96 | Intron | 2 |
CP068274.2:188 804 271 | 289 | SINE (Alu) | CCDC110 | Intron | 2 |
CP068274.2:192 726 791 | 319 | SINE (Alu) | LOC105377614 | Intron | 2 |
CP068275.2:2 584 962 | 314 | SINE (Alu) | CNTN4 | Intron | 2 |
CP068275.2:7 563 823 | 311 | SINE (Alu) | GRM7 | Intron | 2 |
CP068275.2:12 308 635 | 308 | SINE (Alu) | PPARG | Intron | 2 |
CP068275.2:12 655 079 | 175 | Retroposon (SVA) | RAF1 | Intron | 1 |
CP068275.2:14 043 590 | 332 | SINE (Alu) | TPRXL | Intron | 2 |
CP068275.2:17 692 738 | 322 | SINE (Alu) | TBC1D5 | Intron | 2 |
CP068275.2:17 706 756 | 146 | Retroposon (SVA) | TBC1D5 | Intron | 2 |
CP068275.2:24 782 410 | 321 | SINE (Alu) | LOC107986070 | Intron | 2 |
CP068275.2:24 950 583 | 2 953 | LINE (L1) | RARB | Intron | 2 |
CP068275.2:25 252 739 | 71 | LINE (L1) | RARB | Intron | 2 |
CP068275.2:25 351 236 | 318 | SINE (Alu) | RARB | Intron | 2 |
CP068275.2:28 128 297 | 324 | SINE (Alu) | LOC105377008 | Intron | 2 |
CP068275.2:29 475 804 | 159 | LTR (ERV1) | RBMS3 | Intron | 2 |
CP068275.2:29 581 547 | 321 | SINE (Alu) | RBMS3 | Intron | 2 |
CP068275.2:33 513 436 | 876 | LINE (L1) | CLASP2 | Intron | 2 |
CP068275.2:34 318 450 | 6 091 | LINE (L1) | LINC01811 | Intron | 2 |
CP068275.2:36 454 965 | 138 | LTR (ERV1) | STAC | Intron | 2 |
CP068275.2:38 119 250 | 134 | SINE (Alu) | DLEC1 | Intron | 2 |
CP068275.2:42 872 482 | 326 | SINE (Alu) | ACKR2 | Intron | 2 |
CP068275.2:45 150 159 | 315 | SINE (Alu) | CDCP1 | Intron | 2 |
CP068275.2:45 517 532 | 315 | SINE (Alu) | LARS2 | Intron | 2 |
CP068275.2:47 760 449 | 317 | SINE (Alu) | SMARCC1 | Intron | 2 |
CP068275.2:49 943 579 | 325 | SINE (Alu) | MON1A | Intron | 2 |
CP068275.2:50 054 726 | 268 | SINE (Alu) | RBM6 | Intron | 2 |
CP068275.2:50 341 806 | 97 | Retroposon (SVA) | HYAL1 | Intron | 1 |
CP068275.2:50 871 697 | 331 | SINE (Alu) | DOCK3 | Intron | 2 |
CP068275.2:51 280 054 | 77 | Retroposon (SVA) | DOCK3 | Intron | 2 |
CP068275.2:59 950 161 | 108 | SINE (Alu) | FHIT | Intron | 2 |
CP068275.2:61 714 843 | 280 | Retroposon (SVA) | PTPRG | Intron | 2 |
CP068275.2:61 714 843 | 177 | Retroposon (SVA) | PTPRG | Intron | 2 |
CP068275.2:66 961 938 | 131 | LINE (L1) | LOC105377144 | Intron | 2 |
CP068275.2:67 489 000 | 97 | Retroposon (SVA) | SUCLG2 | Intron | 2 |
CP068275.2:68 878 080 | 290 | SINE (Alu) | TAFA4 | Intron | 2 |
CP068275.2:70 402 714 | 331 | SINE (Alu) | SAMMSON | Intron | 2 |
CP068275.2:71 229 921 | 301 | SINE (Alu) | FOXP1 | Intron | 2 |
CP068275.2:78 864 620 | 88 | LINE (L1) | ROBO1 | Intron | 2 |
CP068275.2:82 376 966 | 107 | LTR (ERV1) | LINC02008 | Intron | 2 |
CP068275.2:86 130 106 | 331 | SINE (Alu) | CADM2 | Intron | 2 |
CP068275.2:114 228 328 | 339 | SINE (Alu) | LOC105374039 | Intron | 2 |
CP068275.2:114 926 706 | 49 | LINE (L1) | SLC9C1 | Intron | 2 |
CP068275.2:115 469 172 | 3 449 | Retroposon (SVA) | LINC02042 | Intron | 2 |
CP068275.2:127 575 229 | 323 | SINE (Alu) | ITGB5 | Intron | 2 |
CP068275.2:127 816 677 | 324 | SINE (Alu) | SLC12A8 | Intron | 2 |
CP068275.2:128 503 270 | 307 | SINE (Alu) | TUBB8P11 | Intron | 2 |
CP068275.2:132 210 422 | 306 | SINE (Alu) | IFT122 | Intron | 2 |
CP068275.2:135 215 099 | 403 | Retroposon (SVA) | DNAJC13 | Intron | 2 |
CP068275.2:135 215 488 | 49 | Retroposon (SVA) | DNAJC13 | Intron | 2 |
CP068275.2:145 488 419 | 314 | SINE (Alu) | TRPC1 | Intron | 2 |
CP068275.2:146 222 567 | 314 | SINE (Alu) | SLC9A9 | Intron | 2 |
CP068275.2:146 290 331 | 107 | SINE (Alu) | SLC9A9 | Intron | 2 |
CP068275.2:152 131 587 | 97 | Retroposon (SVA) | TM4SF1-AS1 | Intron | 2 |
CP068275.2:152 131 792 | 253 | Retroposon (SVA) | TM4SF1-AS1 | Intron | 2 |
CP068275.2:161 020 241 | 337 | SINE (Alu) | RSRC1 | Intron | 2 |
CP068275.2:163 183 722 | 176 | SINE (Alu) | SMC4 | Intron | 2 |
CP068275.2:171 951 917 | 309 | SINE (Alu) | MECOM | Intron | 2 |
CP068275.2:177 480 228 | 321 | SINE (Alu) | NAALADL2 | Intron | 2 |
CP068275.2:181 924 701 | 49 | Retroposon (SVA) | PIK3CA-DT | Intron | 1 |
CP068275.2:181 925 311 | 67 | Retroposon (SVA) | PIK3CA-DT | Intron | 2 |
CP068275.2:190 057 582 | 328 | SINE (Alu) | MASP1 | Intron | 2 |
CP068275.2:191 982 178 | 321 | SINE (Alu) | TPRG1 | Intron | 2 |
CP068275.2:933 241 | 315 | SINE (Alu) | CNTN6 | Intron | 2 |
CP068276.2:1 198 288 | 306 | SINE (Alu) | SNTG2 | Intron | 2 |
CP068276.2:1 468 423 | 329 | SINE (Alu) | TPO | Intron | 2 |
CP068276.2:15 057 246 | 330 | SINE (Alu) | NBAS | Intron | 2 |
CP068276.2:24 290 233 | 122 | SINE (Alu) | ITSN2 | Intron | 2 |
CP068276.2:26 286 406 | 328 | SINE (Alu) | HADHB | Intron | 2 |
CP068276.2:42 610 850 | 302 | Retroposon (SVA) | MTA3 | Intron | 2 |
CP068276.2:43 303 387 | 357 | Retroposon (SVA) | THADA | Intron | 2 |
CP068276.2:44 594 241 | 447 | Retroposon (SVA) | CAMKMT | Intron | 1 |
CP068276.2:44 604 010 | 316 | SINE (Alu) | CAMKMT | Intron | 2 |
CP068276.2:48 560 591 | 2 989 | Retroposon (SVA) | STON1-GTF2A1L | Intron | 2 |
CP068276.2:50 018 018 | 132 | SINE (Alu) | NRXN1 | Intron | 2 |
CP068276.2:53 161 221 | 64 | LINE (L1) | LOC105369165 | Intron | 2 |
CP068276.2:54 460 543 | 248 | SINE (Alu) | SPTBN1 | Promoter | 2 |
CP068276.2:54 460 543 | 248 | SINE (Alu) | SPTBN1 | Intron | 2 |
CP068276.2:63 730 049 | 351 | Retroposon (SVA) | WDPCP | Intron | 1 |
CP068276.2:65 116 309 | 304 | SINE (Alu) | RAB1A | Intron | 2 |
CP068276.2:69 529 836 | 317 | SINE (Alu) | AAK1 | Intron | 2 |
CP068276.2:74 292 982 | 327 | SINE (Alu) | SLC4A5 | Intron | 2 |
CP068276.2:80 542 014 | 269 | SINE (Alu) | CTNNA2 | Intron | 2 |
CP068276.2:87 918 976 | 449 | LINE (L1) | RGPD2 | Intron | 2 |
CP068276.2:102 198 725 | 315 | SINE (Alu) | MAP4K4 | Intron | 2 |
CP068276.2:106 297 452 | 316 | SINE (Alu) | NCK2 | Intron | 2 |
CP068276.2:107 771 785 | 320 | SINE (Alu) | LINC01789 | Intron | 2 |
CP068276.2:111 709 562 | 329 | SINE (Alu) | MIR4435-2HG | Intron | 2 |
CP068276.2:112 385 913 | 325 | SINE (Alu) | MERTK | Intron | 2 |
CP068276.2:113 889 028 | 316 | SINE (Alu) | ZNG1B | Intron | 2 |
CP068276.2:128 316 576 | 326 | SINE (Alu) | AMMECR1L | Intron | 2 |
CP068276.2:131 521 062 | 319 | SINE (Alu) | FAM168B | Intron | 2 |
CP068276.2:133 554 576 | 319 | SINE (Alu) | NCKAP5 | Intron | 2 |
CP068276.2:141 222 232 | 328 | SINE (Alu) | LRP1B | Intron | 2 |
CP068276.2:141 752 388 | 57 | LINE (L1) | LRP1B | Intron | 2 |
CP068276.2:148 342 955 | 299 | SINE (Alu) | ACVR2A | Intron | 2 |
CP068276.2:152 612 938 | 173 | Retroposon (SVA) | STAM2 | Intron | 1 |
CP068276.2:153 756 655 | 321 | SINE (Alu) | GALNT13 | Intron | 2 |
CP068276.2:156 904 280 | 49 | Retroposon (SVA) | GPD2 | Intron | 1 |
CP068276.2:156 904 280 | 49 | Retroposon (SVA) | GPD2 | Intron | 1 |
CP068276.2:158 030 254 | 324 | SINE (Alu) | ACVR1C | Intron | 2 |
CP068276.2:158 882 881 | 329 | SINE (Alu) | CCDC148 | Intron | 2 |
CP068276.2:159 710 998 | 156 | SINE (Alu) | WDSUB1 | Intron | 2 |
CP068276.2:169 505 778 | 321 | SINE (Alu) | ABCB11 | Intron | 2 |
CP068276.2:173 186 817 | 116 | Retroposon (SVA) | PDK1 | Intron | 2 |
CP068276.2:174 714 646 | 320 | SINE (Alu) | OLA1 | Intron | 2 |
CP068276.2:175 359 957 | 318 | SINE (Alu) | CHN1 | Intron | 2 |
CP068276.2:177 936 293 | 333 | SINE (Alu) | AGPS | Intron | 2 |
CP068276.2:177 969 023 | 340 | SINE (Alu) | AGPS | Intron | 2 |
CP068276.2:188 787 065 | 302 | SINE (Alu) | GULP1 | Intron | 2 |
CP068276.2:191 887 362 | 477 | Retroposon (SVA) | MYO1B | Intron | 2 |
CP068276.2:195 638 179 | 322 | SINE (Alu) | LOC105376755 | Intron | 2 |
CP068276.2:195 693 163 | 329 | SINE (Alu) | LOC105376755 | Intron | 2 |
CP068276.2:198 382 298 | 311 | SINE (Alu) | PLCL1 | Intron | 2 |
CP068276.2:198 513 690 | 137 | SINE (Alu) | PLCL1 | Intron | 2 |
CP068276.2:208 081 694 | 320 | SINE (Alu) | METTL21A | Intron | 2 |
CP068276.2:209 066 826 | 324 | SINE (Alu) | LOC101927960 | Intron | 2 |
CP068276.2:212 323 899 | 314 | SINE (Alu) | ERBB4 | Intron | 2 |
CP068276.2:215 319 683 | 76 | Retroposon (SVA) | SNHG31 | Intron | 2 |
CP068276.2:215 369 783 | 157 | SINE (Alu) | SNHG31 | Intron | 2 |
CP068276.2:216 169 155 | 326 | SINE (Alu) | LOC102724861 | Intron | 2 |
CP068276.2:216 174 633 | 132 | SINE (Alu) | LOC102724861 | Intron | 1 |
CP068276.2:217 798 533 | 304 | SINE (Alu) | DIRC3-AS1 | Intron | 2 |
CP068276.2:219 198 425 | 327 | SINE (Alu) | TTLL4 | Intron | 2 |
CP068276.2:220 421 760 | 313 | SINE (Alu) | LOC105373890 | Intron | 2 |
CP068276.2:223 381 038 | 2 557 | Retroposon (SVA) | ACSL3 | Intron | 1 |
CP068276.2:223 415 723 | 316 | SINE (Alu) | ACSL3 | Intron | 2 |
CP068276.2:233 687 454 | 148 | SINE (Alu) | INPP5D | Intron | 2 |
CP068276.2:241 825 383 | 148 | LTR (ERVL) | SEPTIN2 | Intron | 1 |
CP068277.2:6 326 450 | 176 | SINE (Alu) | CAMTA1 | Promoter | 2 |
CP068277.2:6 326 450 | 176 | SINE (Alu) | CAMTA1 | Intron | 2 |
CP068277.2:11 959 745 | 2 289 | Retroposon (SVA) | VPS13D | Intron | 2 |
CP068277.2:17 172 541 | 321 | SINE (Alu) | PADI4 | Intron | 2 |
CP068277.2:18 080 | 317 | SINE (Alu) | LOC127239154 | Intron | 2 |
CP068277.2:20 992 774 | 315 | SINE (Alu) | EIF4G3 | Intron | 2 |
CP068277.2:28 942 968 | 322 | SINE (Alu) | EPB41 | Intron | 2 |
CP068277.2:38 352 286 | 74 | SINE (Alu) | LOC105378657 | Intron | 2 |
CP068277.2:39 079 394 | 316 | SINE (Alu) | MACF1 | Intron | 2 |
CP068277.2:41 795 200 | 326 | SINE (Alu) | HIVEP3 | Intron | 2 |
CP068277.2:41 888 856 | 1 497 | LINE (L1) | HIVEP3 | Intron | 2 |
CP068277.2:42 148 108 | 312 | SINE (Alu) | FOXJ3 | Intron | 2 |
CP068277.2:43 262 333 | 329 | SINE (Alu) | SZT2 | Intron | 2 |
CP068277.2:50 326 587 | 337 | SINE (Alu) | FAF1 | Intron | 2 |
CP068277.2:56 301 172 | 313 | SINE (Alu) | LOC124905710 | Intron | 2 |
CP068277.2:57 484 949 | 211 | SINE (Alu) | DAB1 | Intron | 2 |
CP068277.2:58 151 162 | 270 | SINE (Alu) | DAB1 | Intron | 2 |
CP068277.2:62 068 645 | 318 | SINE (Alu) | RPS15AP7 | Promoter | 2 |
CP068277.2:65 467 967 | 316 | SINE (Alu) | LEPR | Intron | 2 |
CP068277.2:69 941 365 | 331 | SINE (Alu) | LRRC7 | Intron | 2 |
CP068277.2:72 052 222 | 316 | SINE (Alu) | NEGR1 | Intron | 2 |
CP068277.2:74 568 856 | 3 708 | LINE (L1) | CRYZ | Intron | 2 |
CP068277.2:77 006 803 | 307 | SINE (Alu) | PIGK | Intron | 2 |
CP068277.2:77 195 456 | 126 | SINE (MIR) | AK5 | Intron | 1 |
CP068277.2:78 774 660 | 319 | SINE (Alu) | ADGRL4 | Intron | 2 |
CP068277.2:81 683 953 | 322 | SINE (Alu) | ADGRL2 | Intron | 2 |
CP068277.2:82 984 353 | 1 737 | LINE (L1) | LINC01362 | Intron | 2 |
CP068277.2:89 748 218 | 269 | SINE (Alu) | LRRC8D | Intron | 2 |
CP068277.2:90 378 503 | 318 | SINE (Alu) | LINC02787 | Intron | 2 |
CP068277.2:97 099 968 | 324 | SINE (Alu) | DPYD-AS1 | Intron | 2 |
CP068277.2:98 993 317 | 299 | SINE (Alu) | PLPPR5-AS1 | Intron | 2 |
CP068277.2:99 773 243 | 142 | SINE (Alu) | LOC124904230 | Intron | 2 |
CP068277.2:107 637 360 | 308 | SINE (Alu) | VAV3 | Intron | 2 |
CP068277.2:109 210 173 | 76 | Retroposon (SVA) | ELAPOR1 | Intron | 2 |
CP068277.2:111 310 361 | 61 | LINE (L1) | CHIA | Intron | 2 |
CP068277.2:111 575 341 | 295 | SINE (Alu) | RAP1A | Intron | 2 |
CP068277.2:112 860 458 | 314 | SINE (Alu) | LINC01356 | Intron | 2 |
CP068277.2:114 512 654 | 310 | SINE (Alu) | TRIM33 | Intron | 2 |
CP068277.2:117 439 076 | 173 | Retroposon (SVA) | MAN1A2 | Intron | 2 |
CP068277.2:117 439 865 | 79 | Retroposon (SVA) | MAN1A2 | Intron | 2 |
CP068277.2:117 557 840 | 222 | SINE (Alu) | VPS25P1 | Promoter | 2 |
CP068277.2:149 352 606 | 277 | SINE (Alu) | ANP32E | Intron | 2 |
CP068277.2:150 113 934 | 336 | SINE (Alu) | ANXA9 | Intron | 2 |
CP068277.2:155 092 707 | 320 | SINE (Alu) | ARHGEF2 | Intron | 2 |
CP068277.2:160 560 569 | 359 | Retroposon (SVA) | TRE-TTC4-2 | Promoter | 1 |
CP068277.2:161 611 471 | 312 | SINE (Alu) | NOS1AP | Intron | 2 |
CP068277.2:161 637 228 | 319 | SINE (Alu) | NOS1AP | Intron | 2 |
CP068277.2:162 592 388 | 333 | SINE (Alu) | RGS5 | Intron | 2 |
CP068277.2:165 238 275 | 2 352 | Retroposon (SVA) | UCK2 | Intron | 2 |
CP068277.2:166 450 102 | 62 | LTR (ERVL) | STYXL2 | Intron | 2 |
CP068277.2:167 095 119 | 317 | SINE (Alu) | MPZL1 | Intron | 2 |
CP068277.2:168 612 294 | 126 | LINE (L1) | NME7 | Intron | 2 |
CP068277.2:173 333 814 | 325 | SINE (Alu) | RC3H1 | Intron | 2 |
CP068277.2:178 877 824 | 352 | SINE (Alu) | AXDND1 | Intron | 2 |
CP068277.2:180 974 636 | 322 | SINE (Alu) | CACNA1E | Intron | 2 |
CP068277.2:180 987 562 | 282 | SINE (Alu) | CACNA1E | Intron | 2 |
CP068277.2:181 811 277 | 323 | SINE (Alu) | RGSL1 | Intron | 2 |
CP068277.2:196 178 912 | 323 | SINE (Alu) | CFHR4 | Intron | 2 |
CP068277.2:196 304 551 | 286 | SINE (Alu) | F13B | Intron | 2 |
CP068277.2:197 760 067 | 319 | SINE (Alu) | LOC105371677 | Intron | 2 |
CP068277.2:198 619 298 | 320 | SINE (Alu) | LINC02789 | Intron | 2 |
CP068277.2:203 533 894 | 329 | SINE (Alu) | PLEKHA6 | Intron | 2 |
CP068277.2:203 640 460 | 329 | SINE (Alu) | PLEKHA6 | Intron | 2 |
CP068277.2:205 230 886 | 313 | SINE (Alu) | SLC26A9-AS1 | Intron | 2 |
CP068277.2:209 360 883 | 315 | SINE (Alu) | SYT14 | Intron | 2 |
CP068277.2:210 357 660 | 118 | Retroposon (SVA) | KCNH1 | Intron | 2 |
CP068277.2:211 543 946 | 1 482 | Retroposon (SVA) | PPP2R5A | Intron | 2 |
CP068277.2:211 713 734 | 84 | SINE (Alu) | LINC02771 | Intron | 2 |
CP068277.2:211 837 436 | 317 | SINE (Alu) | ATF3 | Intron | 2 |
CP068277.2:212 046 263 | 2 410 | Retroposon (SVA) | TATDN3 | Intron | 2 |
CP068277.2:215 252 250 | 169 | SINE (Alu) | USH2A | Intron | 2 |
CP068277.2:216 822 048 | 301 | SINE (Alu) | GPATCH2 | Intron | 2 |
CP068277.2:216 985 245 | 312 | SINE (Alu) | SPATA17 | Intron | 2 |
CP068277.2:221 722 301 | 171 | Retroposon (SVA) | LOC124905750 | Intron | 2 |
CP068277.2:221 931 096 | 328 | SINE (Alu) | AIDA | Intron | 2 |
CP068277.2:225 007 009 | 178 | SINE (Alu) | EPHX1 | Intron | 2 |
CP068277.2:226 463 590 | 324 | SINE (Alu) | CDC42BPA | Intron | 2 |
CP068277.2:226 503 106 | 135 | SINE (Alu) | CDC42BPA | Intron | 2 |
CP068277.2:230 329 881 | 303 | SINE (Alu) | TTC13 | Intron | 2 |
CP068277.2:232 592 710 | 314 | SINE (Alu) | PCNX2 | Intron | 2 |
CP068277.2:234 701 066 | 85 | Retroposon (SVA) | ARID4B | Intron | 2 |
CP068277.2:235 287 889 | 335 | SINE (Alu) | LOC105373215 | Promoter | 2 |
CP068277.2:235 831 713 | 323 | SINE (Alu) | EDARADD | Intron | 2 |
CP068277.2:236 817 294 | 319 | SINE (Alu) | RYR2 | Intron | 2 |
CP068277.2:239 030 423 | 312 | SINE (Alu) | CHRM3 | Intron | 2 |
CP068277.2:239 865 254 | 323 | SINE (Alu) | FMN2 | Intron | 2 |
CP068277.2:241 560 354 | 6 041 | LINE (L1) | PLD5 | Intron | 2 |
CP068277.2:245 477 474 | 318 | SINE (Alu) | SMYD3 | Intron | 2 |
CP068277.2:245 665 518 | 331 | SINE (Alu) | SMYD3 | Intron | 2 |
CP068277.2:245 851 672 | 317 | SINE (Alu) | SMYD3 | Intron | 2 |
CP068277.2:246 075 792 | 266 | SINE (Alu) | CNST | Intron | 2 |
CP068277.2:246 295 973 | 300 | SINE (Alu) | AHCTF1 | Intron | 2 |
Position | Length | Type | Gene | Annotation | Occurrences |
|---|---|---|---|---|---|
CP068258.2:1 634 241 | 142 | DNA (hAT) | SIRPB1 | Intron | 2 |
CP068258.2:55 000 758 | 56 | DNA (hAT) | TSHZ2 | Intron | 1 |
CP068268.2:29 625 323 | 54 | DNA (TcMar) | SVIL | Intron | 2 |
CP068270.2:3 478 778 | 181 | DNA (hAT) | CSMD1 | Intron | 2 |
CP068273.2:178 323 193 | 93 | DNA (TcMar) | FAM153A | Intron | 1 |
It is common to find deletions whose coordinates match those of a TE sequence in the reference genome. This section presents them.
Allele frequency is shown for TE deletions for each chromosome. Each dot marks a different deletion.
This section shows the result of enrichment analysis on the genes affected with TE insertions.
Barplot for enriched categories. Values on top have lower p values.
The category with lowest p value is Pyrin domain binding (1.336382e-11), and the highest (among the lowest 10) is guanyl-nucleotide exchange factor activity (0.01491454). The ratio is 1116039049.19, i.e., they differ in 9 orders of magnitude.
ID | Description | GeneRatio | BgRatio | pvalue | p.adjust | qvalue | Count | GeneRatioCalc |
|---|---|---|---|---|---|---|---|---|
GO:0032090 | Pyrin domain binding | 10/689 | 11/20758 | 1.626e-14 | 1.336e-11 | 1.22e-11 | 10 | 0.01451 |
GO:0046703 | natural killer cell lectin-like receptor binding | 8/689 | 27/20758 | 1.795e-06 | 0.0004127 | 0.0003769 | 8 | 0.01161 |
GO:0042609 | CD4 receptor binding | 6/689 | 13/20758 | 1.84e-06 | 0.0004127 | 0.0003769 | 6 | 0.008708 |
GO:0005216 | ion channel activity | 37/689 | 480/20758 | 2.008e-06 | 0.0004127 | 0.0003769 | 37 | 0.0537 |
GO:0035091 | phosphatidylinositol binding | 23/689 | 288/20758 | 0.0001007 | 0.01454 | 0.01327 | 23 | 0.03338 |
GO:0003779 | actin binding | 32/689 | 471/20758 | 0.0001132 | 0.01454 | 0.01327 | 32 | 0.04644 |
GO:0022836 | gated channel activity | 27/689 | 372/20758 | 0.0001316 | 0.01454 | 0.01327 | 27 | 0.03919 |
GO:0140303 | intramembrane lipid transporter activity | 8/689 | 47/20758 | 0.0001415 | 0.01454 | 0.01327 | 8 | 0.01161 |
GO:0140327 | flippase activity | 5/689 | 17/20758 | 0.0001762 | 0.01491 | 0.01362 | 5 | 0.007257 |
GO:0005085 | guanyl-nucleotide exchange factor activity | 20/689 | 245/20758 | 0.0002095 | 0.01491 | 0.01362 | 20 | 0.02903 |
GO:0004791 | thioredoxin-disulfide reductase activity | 4/689 | 10/20758 | 0.0002154 | 0.01491 | 0.01362 | 4 | 0.005806 |
GO:0005096 | GTPase activator activity | 23/689 | 304/20758 | 0.0002235 | 0.01491 | 0.01362 | 23 | 0.03338 |
GO:0005516 | calmodulin binding | 18/689 | 210/20758 | 0.0002359 | 0.01491 | 0.01362 | 18 | 0.02612 |
GO:0005262 | calcium channel activity | 13/689 | 126/20758 | 0.0002898 | 0.01702 | 0.01554 | 13 | 0.01887 |
GO:0005261 | cation channel activity | 25/689 | 360/20758 | 0.0004467 | 0.02341 | 0.02137 | 25 | 0.03628 |
GO:0046873 | metal ion transmembrane transporter activity | 30/689 | 466/20758 | 0.0004556 | 0.02341 | 0.02137 | 30 | 0.04354 |
GO:0005543 | phospholipid binding | 31/689 | 495/20758 | 0.0005858 | 0.02833 | 0.02586 | 31 | 0.04499 |
GO:0047134 | protein-disulfide reductase (NAD(P)) activity | 4/689 | 13/20758 | 0.0006771 | 0.03034 | 0.0277 | 4 | 0.005806 |
GO:0005200 | structural constituent of cytoskeleton | 12/689 | 121/20758 | 0.0007014 | 0.03034 | 0.0277 | 12 | 0.01742 |
GO:0005319 | lipid transporter activity | 15/689 | 176/20758 | 0.0008057 | 0.03197 | 0.02919 | 15 | 0.02177 |
GO:0015085 | calcium ion transmembrane transporter activity | 13/689 | 142/20758 | 0.0009122 | 0.03197 | 0.02919 | 13 | 0.01887 |
GO:0070679 | inositol 1,4,5 trisphosphate binding | 4/689 | 14/20758 | 0.0009232 | 0.03197 | 0.02919 | 4 | 0.005806 |
GO:0140333 | glycerophospholipid flippase activity | 4/689 | 14/20758 | 0.0009232 | 0.03197 | 0.02919 | 4 | 0.005806 |
GO:0042608 | T cell receptor binding | 6/689 | 35/20758 | 0.0009333 | 0.03197 | 0.02919 | 6 | 0.008708 |
GO:0016668 | oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor | 4/689 | 15/20758 | 0.001226 | 0.04031 | 0.03681 | 4 | 0.005806 |
GO:0030247 | polysaccharide binding | 6/689 | 38/20758 | 0.001459 | 0.04613 | 0.04212 | 6 | 0.008708 |
GO:0005548 | phospholipid transporter activity | 8/689 | 67/20758 | 0.001641 | 0.04997 | 0.04563 | 8 | 0.01161 |
GO:0051959 | dynein light intermediate chain binding | 5/689 | 27/20758 | 0.001747 | 0.05128 | 0.04682 | 5 | 0.007257 |
GO:0045296 | cadherin binding | 23/689 | 357/20758 | 0.001997 | 0.05556 | 0.05073 | 23 | 0.03338 |
GO:0015385 | sodium:proton antiporter activity | 4/689 | 17/20758 | 0.002028 | 0.05556 | 0.05073 | 4 | 0.005806 |
GO:0140326 | ATPase-coupled intramembrane lipid transporter activity | 5/689 | 29/20758 | 0.002433 | 0.06451 | 0.0589 | 5 | 0.007257 |
GO:0030165 | PDZ domain binding | 9/689 | 89/20758 | 0.002773 | 0.07124 | 0.06505 | 9 | 0.01306 |
GO:0004675 | transmembrane receptor protein serine/threonine kinase activity | 4/689 | 19/20758 | 0.003133 | 0.07626 | 0.06963 | 4 | 0.005806 |
GO:0033038 | bitter taste receptor activity | 6/689 | 44/20758 | 0.003154 | 0.07626 | 0.06963 | 6 | 0.008708 |
GO:0005546 | phosphatidylinositol-4,5-bisphosphate binding | 9/689 | 92/20758 | 0.003473 | 0.08157 | 0.07448 | 9 | 0.01306 |
GO:0022839 | ion gated channel activity | 6/689 | 48/20758 | 0.004904 | 0.112 | 0.1022 | 6 | 0.008708 |
GO:0005229 | intracellular calcium activated chloride channel activity | 4/689 | 22/20758 | 0.005464 | 0.1152 | 0.1052 | 4 | 0.005806 |
GO:0051139 | metal cation:proton antiporter activity | 4/689 | 22/20758 | 0.005464 | 0.1152 | 0.1052 | 4 | 0.005806 |
GO:0061778 | intracellular chloride channel activity | 4/689 | 22/20758 | 0.005464 | 0.1152 | 0.1052 | 4 | 0.005806 |
GO:1902936 | phosphatidylinositol bisphosphate binding | 10/689 | 118/20758 | 0.005954 | 0.1204 | 0.11 | 10 | 0.01451 |
GO:0008527 | taste receptor activity | 6/689 | 50/20758 | 0.006007 | 0.1204 | 0.11 | 6 | 0.008708 |
GO:0017124 | SH3 domain binding | 11/689 | 139/20758 | 0.006703 | 0.1312 | 0.1198 | 11 | 0.01597 |
GO:0097110 | scaffold protein binding | 7/689 | 69/20758 | 0.007823 | 0.1463 | 0.1336 | 7 | 0.01016 |
GO:0016798 | hydrolase activity, acting on glycosyl bonds | 11/689 | 142/20758 | 0.00783 | 0.1463 | 0.1336 | 11 | 0.01597 |
GO:0098632 | cell-cell adhesion mediator activity | 6/689 | 54/20758 | 0.008737 | 0.1596 | 0.1457 | 6 | 0.008708 |
GO:0015079 | potassium ion transmembrane transporter activity | 12/689 | 166/20758 | 0.009551 | 0.1707 | 0.1558 | 12 | 0.01742 |
GO:0008381 | mechanosensitive ion channel activity | 4/689 | 26/20758 | 0.01006 | 0.1759 | 0.1606 | 4 | 0.005806 |
GO:0008066 | glutamate receptor activity | 4/689 | 27/20758 | 0.0115 | 0.197 | 0.1799 | 4 | 0.005806 |
GO:0015631 | tubulin binding | 22/689 | 392/20758 | 0.012 | 0.2013 | 0.1838 | 22 | 0.03193 |
GO:0034236 | protein kinase A catalytic subunit binding | 3/689 | 15/20758 | 0.01229 | 0.2021 | 0.1845 | 3 | 0.004354 |
GO:0042578 | phosphoric ester hydrolase activity | 22/689 | 396/20758 | 0.01336 | 0.2154 | 0.1967 | 22 | 0.03193 |
GO:0004674 | protein serine/threonine kinase activity | 25/689 | 470/20758 | 0.01448 | 0.2207 | 0.2015 | 25 | 0.03628 |
GO:0008559 | ABC-type xenobiotic transporter activity | 3/689 | 16/20758 | 0.01476 | 0.2207 | 0.2015 | 3 | 0.004354 |
GO:0015386 | potassium:proton antiporter activity | 3/689 | 16/20758 | 0.01476 | 0.2207 | 0.2015 | 3 | 0.004354 |
GO:0140328 | floppase activity | 3/689 | 16/20758 | 0.01476 | 0.2207 | 0.2015 | 3 | 0.004354 |
GO:0098631 | cell adhesion mediator activity | 6/689 | 64/20758 | 0.01924 | 0.2806 | 0.2562 | 6 | 0.008708 |
GO:0019905 | syntaxin binding | 7/689 | 83/20758 | 0.02031 | 0.2806 | 0.2562 | 7 | 0.01016 |
GO:0015278 | calcium-release channel activity | 3/689 | 18/20758 | 0.02048 | 0.2806 | 0.2562 | 3 | 0.004354 |
GO:0017128 | phospholipid scramblase activity | 3/689 | 18/20758 | 0.02048 | 0.2806 | 0.2562 | 3 | 0.004354 |
GO:0030275 | LRR domain binding | 3/689 | 18/20758 | 0.02048 | 0.2806 | 0.2562 | 3 | 0.004354 |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds | 8/689 | 104/20758 | 0.02246 | 0.2912 | 0.2659 | 8 | 0.01161 |
GO:0005154 | epidermal growth factor receptor binding | 4/689 | 33/20758 | 0.02296 | 0.2912 | 0.2659 | 4 | 0.005806 |
GO:0005451 | monovalent cation:proton antiporter activity | 4/689 | 33/20758 | 0.02296 | 0.2912 | 0.2659 | 4 | 0.005806 |
GO:0015299 | solute:proton antiporter activity | 4/689 | 33/20758 | 0.02296 | 0.2912 | 0.2659 | 4 | 0.005806 |
GO:0032395 | MHC class II receptor activity | 6/689 | 67/20758 | 0.02359 | 0.2912 | 0.2659 | 6 | 0.008708 |
GO:0004970 | ionotropic glutamate receptor activity | 3/689 | 19/20758 | 0.02374 | 0.2912 | 0.2659 | 3 | 0.004354 |
GO:0008569 | minus-end-directed microtubule motor activity | 3/689 | 19/20758 | 0.02374 | 0.2912 | 0.2659 | 3 | 0.004354 |
GO:0098960 | postsynaptic neurotransmitter receptor activity | 7/689 | 86/20758 | 0.02417 | 0.2921 | 0.2667 | 7 | 0.01016 |
GO:0140828 | metal cation:monoatomic cation antiporter activity | 4/689 | 34/20758 | 0.02535 | 0.302 | 0.2758 | 4 | 0.005806 |
GO:1901981 | phosphatidylinositol phosphate binding | 12/689 | 191/20758 | 0.02601 | 0.3054 | 0.2789 | 12 | 0.01742 |
GO:0051015 | actin filament binding | 14/689 | 236/20758 | 0.02647 | 0.3065 | 0.2798 | 14 | 0.02032 |
GO:0052745 | inositol phosphate phosphatase activity | 3/689 | 20/20758 | 0.02725 | 0.3111 | 0.284 | 3 | 0.004354 |
GO:0000287 | magnesium ion binding | 14/689 | 240/20758 | 0.02995 | 0.3111 | 0.284 | 14 | 0.02032 |
GO:0015276 | ligand-gated ion channel activity | 10/689 | 152/20758 | 0.0305 | 0.3111 | 0.284 | 10 | 0.01451 |
GO:0022834 | ligand-gated channel activity | 10/689 | 152/20758 | 0.0305 | 0.3111 | 0.284 | 10 | 0.01451 |
GO:0044325 | transmembrane transporter binding | 9/689 | 131/20758 | 0.03069 | 0.3111 | 0.284 | 9 | 0.01306 |
GO:0015103 | inorganic anion transmembrane transporter activity | 11/689 | 174/20758 | 0.03094 | 0.3111 | 0.284 | 11 | 0.01597 |
GO:0005001 | transmembrane receptor protein tyrosine phosphatase activity | 3/689 | 21/20758 | 0.03103 | 0.3111 | 0.284 | 3 | 0.004354 |
GO:0015125 | bile acid transmembrane transporter activity | 3/689 | 21/20758 | 0.03103 | 0.3111 | 0.284 | 3 | 0.004354 |
GO:0019198 | transmembrane receptor protein phosphatase activity | 3/689 | 21/20758 | 0.03103 | 0.3111 | 0.284 | 3 | 0.004354 |
GO:0022821 | solute:potassium antiporter activity | 3/689 | 21/20758 | 0.03103 | 0.3111 | 0.284 | 3 | 0.004354 |
GO:0051010 | microtubule plus-end binding | 3/689 | 21/20758 | 0.03103 | 0.3111 | 0.284 | 3 | 0.004354 |
GO:0106310 | protein serine kinase activity | 20/689 | 383/20758 | 0.03157 | 0.3127 | 0.2855 | 20 | 0.02903 |
GO:0051117 | ATPase binding | 7/689 | 92/20758 | 0.03334 | 0.3232 | 0.2951 | 7 | 0.01016 |
GO:0045505 | dynein intermediate chain binding | 4/689 | 37/20758 | 0.03342 | 0.3232 | 0.2951 | 4 | 0.005806 |
GO:0043178 | alcohol binding | 7/689 | 93/20758 | 0.03506 | 0.3318 | 0.3029 | 7 | 0.01016 |
GO:0051018 | protein kinase A binding | 5/689 | 55/20758 | 0.03535 | 0.3318 | 0.3029 | 5 | 0.007257 |
GO:0022843 | voltage-gated cation channel activity | 10/689 | 156/20758 | 0.03552 | 0.3318 | 0.3029 | 10 | 0.01451 |
GO:0005544 | calcium-dependent phospholipid binding | 5/689 | 56/20758 | 0.0378 | 0.3491 | 0.3188 | 5 | 0.007257 |
GO:0019211 | phosphatase activator activity | 3/689 | 23/20758 | 0.03936 | 0.3552 | 0.3243 | 3 | 0.004354 |
GO:1990404 | NAD+-protein ADP-ribosyltransferase activity | 3/689 | 23/20758 | 0.03936 | 0.3552 | 0.3243 | 3 | 0.004354 |
GO:0008429 | phosphatidylethanolamine binding | 2/689 | 10/20758 | 0.04149 | 0.3552 | 0.3243 | 2 | 0.002903 |
GO:0015279 | store-operated calcium channel activity | 2/689 | 10/20758 | 0.04149 | 0.3552 | 0.3243 | 2 | 0.002903 |
GO:0017002 | activin receptor activity | 2/689 | 10/20758 | 0.04149 | 0.3552 | 0.3243 | 2 | 0.002903 |
GO:0050656 | 3'-phosphoadenosine 5'-phosphosulfate binding | 2/689 | 10/20758 | 0.04149 | 0.3552 | 0.3243 | 2 | 0.002903 |
GO:0052743 | inositol tetrakisphosphate phosphatase activity | 2/689 | 10/20758 | 0.04149 | 0.3552 | 0.3243 | 2 | 0.002903 |
GO:0071949 | FAD binding | 4/689 | 40/20758 | 0.04282 | 0.3594 | 0.3281 | 4 | 0.005806 |
GO:0016791 | phosphatase activity | 16/689 | 300/20758 | 0.04322 | 0.3594 | 0.3281 | 16 | 0.02322 |
GO:0008143 | poly(A) binding | 3/689 | 24/20758 | 0.04391 | 0.3594 | 0.3281 | 3 | 0.004354 |
GO:0015035 | protein-disulfide reductase activity | 4/689 | 41/20758 | 0.04625 | 0.3594 | 0.3281 | 4 | 0.005806 |
These plots show connections among categories:
Enrichment map. Categories are connected by genes in common. Dot size indicates number of genes, dot color indicates adjusted p value.
Gene-concept network. Categories (brown dots) are linked by genes in common (gray dots). The size of category dots indicates gene count.
Barplot for enriched categories. Values on top have lower p values.
The category with lowest p value is negative regulation of defense response to virus by host (1.933222e-07), and the highest (among the lowest 10) is positive regulation by symbiont of entry into host (0.0005179149). The ratio is 2679.024, i.e., they differ in 3 orders of magnitude.
ID | Description | GeneRatio | BgRatio | pvalue | p.adjust | qvalue | Count | GeneRatioCalc |
|---|---|---|---|---|---|---|---|---|
GO:0050689 | negative regulation of defense response to virus by host | 8/673 | 10/21069 | 4.425e-11 | 1.933e-07 | 1.774e-07 | 8 | 0.01189 |
GO:0045655 | regulation of monocyte differentiation | 10/673 | 27/21069 | 5.341e-09 | 1.167e-05 | 1.07e-05 | 10 | 0.01486 |
GO:0010975 | regulation of neuron projection development | 40/673 | 468/21069 | 1.827e-08 | 2.661e-05 | 2.441e-05 | 40 | 0.05944 |
GO:0010804 | negative regulation of tumor necrosis factor-mediated signaling pathway | 11/673 | 41/21069 | 4.297e-08 | 4.693e-05 | 4.306e-05 | 11 | 0.01634 |
GO:0030224 | monocyte differentiation | 11/673 | 43/21069 | 7.381e-08 | 6.449e-05 | 5.917e-05 | 11 | 0.01634 |
GO:0045657 | positive regulation of monocyte differentiation | 7/673 | 15/21069 | 1.693e-07 | 0.0001233 | 0.0001131 | 7 | 0.0104 |
GO:0010803 | regulation of tumor necrosis factor-mediated signaling pathway | 13/673 | 78/21069 | 1.049e-06 | 0.0005179 | 0.0004752 | 13 | 0.01932 |
GO:0050687 | negative regulation of defense response to virus | 9/673 | 35/21069 | 1.101e-06 | 0.0005179 | 0.0004752 | 9 | 0.01337 |
GO:0046598 | positive regulation of viral entry into host cell | 7/673 | 19/21069 | 1.185e-06 | 0.0005179 | 0.0004752 | 7 | 0.0104 |
GO:0075294 | positive regulation by symbiont of entry into host | 7/673 | 19/21069 | 1.185e-06 | 0.0005179 | 0.0004752 | 7 | 0.0104 |
GO:0002842 | positive regulation of T cell mediated immune response to tumor cell | 6/673 | 13/21069 | 1.472e-06 | 0.0005845 | 0.0005363 | 6 | 0.008915 |
GO:0019835 | cytolysis | 9/673 | 37/21069 | 1.831e-06 | 0.0006394 | 0.0005867 | 9 | 0.01337 |
GO:0050770 | regulation of axonogenesis | 19/673 | 168/21069 | 1.903e-06 | 0.0006394 | 0.0005867 | 19 | 0.02823 |
GO:0002491 | antigen processing and presentation of endogenous peptide antigen via MHC class II | 6/673 | 14/21069 | 2.506e-06 | 0.000782 | 0.0007175 | 6 | 0.008915 |
GO:0001960 | negative regulation of cytokine-mediated signaling pathway | 14/673 | 105/21069 | 6.317e-06 | 0.001727 | 0.001585 | 14 | 0.0208 |
GO:0002840 | regulation of T cell mediated immune response to tumor cell | 6/673 | 16/21069 | 6.326e-06 | 0.001727 | 0.001585 | 6 | 0.008915 |
GO:0032088 | negative regulation of NF-kappaB transcription factor activity | 15/673 | 121/21069 | 7.403e-06 | 0.001903 | 0.001746 | 15 | 0.02229 |
GO:0002469 | myeloid dendritic cell antigen processing and presentation | 6/673 | 17/21069 | 9.513e-06 | 0.002187 | 0.002007 | 6 | 0.008915 |
GO:0007158 | neuron cell-cell adhesion | 6/673 | 17/21069 | 9.513e-06 | 0.002187 | 0.002007 | 6 | 0.008915 |
GO:0060761 | negative regulation of response to cytokine stimulus | 14/673 | 110/21069 | 1.092e-05 | 0.002386 | 0.002189 | 14 | 0.0208 |
GO:0051056 | regulation of small GTPase mediated signal transduction | 27/673 | 343/21069 | 1.714e-05 | 0.003567 | 0.003272 | 27 | 0.04012 |
GO:0032829 | regulation of CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation | 6/673 | 19/21069 | 1.975e-05 | 0.003751 | 0.003441 | 6 | 0.008915 |
GO:0032831 | positive regulation of CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation | 6/673 | 19/21069 | 1.975e-05 | 0.003751 | 0.003441 | 6 | 0.008915 |
GO:1903902 | positive regulation of viral life cycle | 7/673 | 29/21069 | 2.779e-05 | 0.005059 | 0.004642 | 7 | 0.0104 |
GO:0043382 | positive regulation of memory T cell differentiation | 6/673 | 21/21069 | 3.739e-05 | 0.006535 | 0.005995 | 6 | 0.008915 |
GO:0046629 | gamma-delta T cell activation | 8/673 | 41/21069 | 3.907e-05 | 0.006566 | 0.006024 | 8 | 0.01189 |
GO:0007409 | axonogenesis | 32/673 | 468/21069 | 4.929e-05 | 0.007286 | 0.006685 | 32 | 0.04755 |
GO:0002361 | CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation | 6/673 | 22/21069 | 5.003e-05 | 0.007286 | 0.006685 | 6 | 0.008915 |
GO:0002836 | positive regulation of response to tumor cell | 6/673 | 22/21069 | 5.003e-05 | 0.007286 | 0.006685 | 6 | 0.008915 |
GO:0002839 | positive regulation of immune response to tumor cell | 6/673 | 22/21069 | 5.003e-05 | 0.007286 | 0.006685 | 6 | 0.008915 |
GO:0002424 | T cell mediated immune response to tumor cell | 6/673 | 24/21069 | 8.546e-05 | 0.01131 | 0.01038 | 6 | 0.008915 |
GO:0021756 | striatum development | 6/673 | 24/21069 | 8.546e-05 | 0.01131 | 0.01038 | 6 | 0.008915 |
GO:0043380 | regulation of memory T cell differentiation | 6/673 | 24/21069 | 8.546e-05 | 0.01131 | 0.01038 | 6 | 0.008915 |
GO:0071875 | adrenergic receptor signaling pathway | 7/673 | 35/21069 | 0.0001014 | 0.01303 | 0.01195 | 7 | 0.0104 |
GO:0043379 | memory T cell differentiation | 6/673 | 25/21069 | 0.0001094 | 0.01335 | 0.01225 | 6 | 0.008915 |
GO:0009595 | detection of biotic stimulus | 9/673 | 60/21069 | 0.0001131 | 0.01335 | 0.01225 | 9 | 0.01337 |
GO:0045332 | phospholipid translocation | 9/673 | 60/21069 | 0.0001131 | 0.01335 | 0.01225 | 9 | 0.01337 |
GO:0098581 | detection of external biotic stimulus | 8/673 | 48/21069 | 0.0001268 | 0.01457 | 0.01337 | 8 | 0.01189 |
GO:0090715 | immunological memory formation process | 6/673 | 26/21069 | 0.0001384 | 0.01551 | 0.01423 | 6 | 0.008915 |
GO:0002429 | immune response-activating cell surface receptor signaling pathway | 27/673 | 390/21069 | 0.0001534 | 0.01634 | 0.01499 | 27 | 0.04012 |
GO:0002757 | immune response-activating signal transduction | 27/673 | 390/21069 | 0.0001534 | 0.01634 | 0.01499 | 27 | 0.04012 |
GO:0008038 | neuron recognition | 8/673 | 50/21069 | 0.0001705 | 0.01725 | 0.01582 | 8 | 0.01189 |
GO:0002837 | regulation of immune response to tumor cell | 6/673 | 27/21069 | 0.0001732 | 0.01725 | 0.01582 | 6 | 0.008915 |
GO:0051262 | protein tetramerization | 12/673 | 108/21069 | 0.0001737 | 0.01725 | 0.01582 | 12 | 0.01783 |
GO:0034612 | response to tumor necrosis factor | 23/673 | 313/21069 | 0.0001973 | 0.01915 | 0.01757 | 23 | 0.03418 |
GO:0098543 | detection of other organism | 7/673 | 39/21069 | 0.0002076 | 0.01953 | 0.01792 | 7 | 0.0104 |
GO:0034204 | lipid translocation | 9/673 | 65/21069 | 0.0002122 | 0.01953 | 0.01792 | 9 | 0.01337 |
GO:0002834 | regulation of response to tumor cell | 6/673 | 28/21069 | 0.0002145 | 0.01953 | 0.01792 | 6 | 0.008915 |
GO:0042093 | T-helper cell differentiation | 10/673 | 80/21069 | 0.0002271 | 0.02025 | 0.01858 | 10 | 0.01486 |
GO:0034329 | cell junction assembly | 30/673 | 468/21069 | 0.0002592 | 0.02265 | 0.02078 | 30 | 0.04458 |
GO:0043280 | positive regulation of cysteine-type endopeptidase activity involved in apoptotic process | 14/673 | 147/21069 | 0.0002686 | 0.02301 | 0.02111 | 14 | 0.0208 |
GO:0002294 | CD4-positive, alpha-beta T cell differentiation involved in immune response | 10/673 | 82/21069 | 0.0002787 | 0.02342 | 0.02149 | 10 | 0.01486 |
GO:0002287 | alpha-beta T cell activation involved in immune response | 10/673 | 83/21069 | 0.000308 | 0.02455 | 0.02252 | 10 | 0.01486 |
GO:0002293 | alpha-beta T cell differentiation involved in immune response | 10/673 | 83/21069 | 0.000308 | 0.02455 | 0.02252 | 10 | 0.01486 |
GO:0002468 | dendritic cell antigen processing and presentation | 6/673 | 30/21069 | 0.0003203 | 0.02455 | 0.02252 | 6 | 0.008915 |
GO:0021544 | subpallium development | 6/673 | 30/21069 | 0.0003203 | 0.02455 | 0.02252 | 6 | 0.008915 |
GO:0090713 | immunological memory process | 6/673 | 30/21069 | 0.0003203 | 0.02455 | 0.02252 | 6 | 0.008915 |
GO:0002761 | regulation of myeloid leukocyte differentiation | 14/673 | 150/21069 | 0.0003309 | 0.02482 | 0.02277 | 14 | 0.0208 |
GO:0050691 | regulation of defense response to virus by host | 8/673 | 55/21069 | 0.0003361 | 0.02482 | 0.02277 | 8 | 0.01189 |
GO:0071625 | vocalization behavior | 5/673 | 20/21069 | 0.0003408 | 0.02482 | 0.02277 | 5 | 0.007429 |
GO:0031589 | cell-substrate adhesion | 27/673 | 411/21069 | 0.0003542 | 0.02498 | 0.02292 | 27 | 0.04012 |
GO:0007605 | sensory perception of sound | 15/673 | 169/21069 | 0.0003545 | 0.02498 | 0.02292 | 15 | 0.02229 |
GO:0007411 | axon guidance | 19/673 | 248/21069 | 0.0004127 | 0.02762 | 0.02534 | 19 | 0.02823 |
GO:0097105 | presynaptic membrane assembly | 4/673 | 12/21069 | 0.0004162 | 0.02762 | 0.02534 | 4 | 0.005944 |
GO:0071709 | membrane assembly | 9/673 | 71/21069 | 0.0004172 | 0.02762 | 0.02534 | 9 | 0.01337 |
GO:0097035 | regulation of membrane lipid distribution | 9/673 | 71/21069 | 0.0004172 | 0.02762 | 0.02534 | 9 | 0.01337 |
GO:0097485 | neuron projection guidance | 19/673 | 249/21069 | 0.0004338 | 0.02829 | 0.02596 | 19 | 0.02823 |
GO:0050905 | neuromuscular process | 15/673 | 173/21069 | 0.0004548 | 0.02922 | 0.02681 | 15 | 0.02229 |
GO:0035774 | positive regulation of insulin secretion involved in cellular response to glucose stimulus | 6/673 | 32/21069 | 0.000463 | 0.02931 | 0.0269 | 6 | 0.008915 |
GO:0030225 | macrophage differentiation | 8/673 | 58/21069 | 0.0004866 | 0.03037 | 0.02786 | 8 | 0.01189 |
GO:0098742 | cell-cell adhesion via plasma-membrane adhesion molecules | 21/673 | 293/21069 | 0.0005114 | 0.03147 | 0.02887 | 21 | 0.0312 |
GO:0002347 | response to tumor cell | 8/673 | 59/21069 | 0.0005474 | 0.03322 | 0.03047 | 8 | 0.01189 |
GO:0051549 | positive regulation of keratinocyte migration | 4/673 | 13/21069 | 0.000586 | 0.0346 | 0.03174 | 4 | 0.005944 |
GO:0097090 | presynaptic membrane organization | 4/673 | 13/21069 | 0.000586 | 0.0346 | 0.03174 | 4 | 0.005944 |
GO:0033209 | tumor necrosis factor-mediated signaling pathway | 13/673 | 141/21069 | 0.0006 | 0.03485 | 0.03197 | 13 | 0.01932 |
GO:0050954 | sensory perception of mechanical stimulus | 16/673 | 197/21069 | 0.000614 | 0.03485 | 0.03197 | 16 | 0.02377 |
GO:0035176 | social behavior | 8/673 | 60/21069 | 0.0006142 | 0.03485 | 0.03197 | 8 | 0.01189 |
GO:0044091 | membrane biogenesis | 9/673 | 75/21069 | 0.0006285 | 0.0352 | 0.0323 | 9 | 0.01337 |
GO:0002292 | T cell differentiation involved in immune response | 10/673 | 91/21069 | 0.000648 | 0.03584 | 0.03288 | 10 | 0.01486 |
GO:0060119 | inner ear receptor cell development | 7/673 | 47/21069 | 0.0006805 | 0.03717 | 0.0341 | 7 | 0.0104 |
GO:0001959 | regulation of cytokine-mediated signaling pathway | 16/673 | 201/21069 | 0.0007631 | 0.04055 | 0.0372 | 16 | 0.02377 |
GO:0051703 | biological process involved in intraspecies interaction between organisms | 8/673 | 62/21069 | 0.0007676 | 0.04055 | 0.0372 | 8 | 0.01189 |
GO:0002253 | activation of immune response | 30/673 | 500/21069 | 0.0007703 | 0.04055 | 0.0372 | 30 | 0.04458 |
GO:0006855 | xenobiotic transmembrane transport | 4/673 | 14/21069 | 0.0007997 | 0.04159 | 0.03816 | 4 | 0.005944 |
GO:0060117 | auditory receptor cell development | 5/673 | 24/21069 | 0.0008405 | 0.0432 | 0.03964 | 5 | 0.007429 |
GO:0016045 | detection of bacterium | 6/673 | 36/21069 | 0.000893 | 0.04517 | 0.04144 | 6 | 0.008915 |
GO:2001056 | positive regulation of cysteine-type endopeptidase activity | 14/673 | 166/21069 | 0.0009137 | 0.04517 | 0.04144 | 14 | 0.0208 |
GO:0015914 | phospholipid transport | 11/673 | 112/21069 | 0.0009197 | 0.04517 | 0.04144 | 11 | 0.01634 |
GO:0086003 | cardiac muscle cell contraction | 9/673 | 79/21069 | 0.0009201 | 0.04517 | 0.04144 | 9 | 0.01337 |
GO:0032535 | regulation of cellular component size | 25/673 | 394/21069 | 0.0009489 | 0.04606 | 0.04226 | 25 | 0.03715 |
GO:0002862 | negative regulation of inflammatory response to antigenic stimulus | 6/673 | 37/21069 | 0.001037 | 0.04981 | 0.0457 | 6 | 0.008915 |
GO:0060113 | inner ear receptor cell differentiation | 8/673 | 65/21069 | 0.001054 | 0.04994 | 0.04582 | 8 | 0.01189 |
GO:1902043 | positive regulation of extrinsic apoptotic signaling pathway via death domain receptors | 4/673 | 15/21069 | 0.001063 | 0.04994 | 0.04582 | 4 | 0.005944 |
GO:0006869 | lipid transport | 28/673 | 467/21069 | 0.00115 | 0.05323 | 0.04884 | 28 | 0.0416 |
GO:0032731 | positive regulation of interleukin-1 beta production | 10/673 | 98/21069 | 0.001158 | 0.05323 | 0.04884 | 10 | 0.01486 |
GO:0007162 | negative regulation of cell adhesion | 24/673 | 378/21069 | 0.001179 | 0.05365 | 0.04922 | 24 | 0.03566 |
GO:0002768 | immune response-regulating cell surface receptor signaling pathway | 28/673 | 470/21069 | 0.001265 | 0.05698 | 0.05228 | 28 | 0.0416 |
GO:0043367 | CD4-positive, alpha-beta T cell differentiation | 10/673 | 100/21069 | 0.001352 | 0.06026 | 0.05529 | 10 | 0.01486 |
GO:0051547 | regulation of keratinocyte migration | 4/673 | 16/21069 | 0.001382 | 0.06069 | 0.05569 | 4 | 0.005944 |
GO:0051960 | regulation of nervous system development | 29/673 | 496/21069 | 0.001389 | 0.06069 | 0.05569 | 29 | 0.04309 |
These plots show connections among categories:
Enrichment map. Categories are connected by genes in common. Dot size indicates number of genes, dot color indicates adjusted p value.
Gene-concept network. Categories (brown dots) are linked by genes in common (gray dots). The size of category dots indicates gene count.
Barplot for enriched categories. Values on top have lower p values.
The category with lowest p value is dystrophin-associated glycoprotein complex (0.0005246208), and the highest (among the lowest 10) is actin-based cell projection (0.009175939). The ratio is 17.49061, i.e., they differ in 1 orders of magnitude.
ID | Description | GeneRatio | BgRatio | pvalue | p.adjust | qvalue | Count | GeneRatioCalc |
|---|---|---|---|---|---|---|---|---|
GO:0016010 | dystrophin-associated glycoprotein complex | 7/707 | 20/22283 | 1.698e-06 | 0.0005246 | 0.0004368 | 7 | 0.009901 |
GO:0005938 | cell cortex | 28/707 | 326/22283 | 2.049e-06 | 0.0005246 | 0.0004368 | 28 | 0.0396 |
GO:0090665 | glycoprotein complex | 7/707 | 25/22283 | 9.169e-06 | 0.001565 | 0.001303 | 7 | 0.009901 |
GO:1990351 | transporter complex | 32/707 | 447/22283 | 1.796e-05 | 0.001873 | 0.00156 | 32 | 0.04526 |
GO:0042383 | sarcolemma | 16/707 | 147/22283 | 1.829e-05 | 0.001873 | 0.00156 | 16 | 0.02263 |
GO:0034702 | ion channel complex | 25/707 | 323/22283 | 4.162e-05 | 0.003551 | 0.002957 | 25 | 0.03536 |
GO:1990531 | phospholipid-translocating ATPase complex | 5/707 | 14/22283 | 5.001e-05 | 0.003658 | 0.003046 | 5 | 0.007072 |
GO:0005802 | trans-Golgi network | 25/707 | 333/22283 | 6.825e-05 | 0.004368 | 0.003637 | 25 | 0.03536 |
GO:0098978 | glutamatergic synapse | 25/707 | 354/22283 | 0.0001786 | 0.009176 | 0.00764 | 25 | 0.03536 |
GO:0098858 | actin-based cell projection | 20/707 | 253/22283 | 0.0001792 | 0.009176 | 0.00764 | 20 | 0.02829 |
GO:0034703 | cation channel complex | 19/707 | 236/22283 | 0.0002041 | 0.009498 | 0.007909 | 19 | 0.02687 |
GO:0032421 | stereocilium bundle | 9/707 | 66/22283 | 0.0002277 | 0.009713 | 0.008088 | 9 | 0.01273 |
GO:0032420 | stereocilium | 8/707 | 57/22283 | 0.0004131 | 0.0146 | 0.01216 | 8 | 0.01132 |
GO:0016342 | catenin complex | 6/707 | 32/22283 | 0.0004471 | 0.0146 | 0.01216 | 6 | 0.008487 |
GO:0001772 | immunological synapse | 8/707 | 58/22283 | 0.000466 | 0.0146 | 0.01216 | 8 | 0.01132 |
GO:1902495 | transmembrane transporter complex | 27/707 | 421/22283 | 0.0004674 | 0.0146 | 0.01216 | 27 | 0.03819 |
GO:0031902 | late endosome membrane | 16/707 | 194/22283 | 0.0004847 | 0.0146 | 0.01216 | 16 | 0.02263 |
GO:0019897 | extrinsic component of plasma membrane | 15/707 | 180/22283 | 0.0006457 | 0.01837 | 0.01529 | 15 | 0.02122 |
GO:0034705 | potassium channel complex | 10/707 | 94/22283 | 0.0007967 | 0.02147 | 0.01788 | 10 | 0.01414 |
GO:0005770 | late endosome | 22/707 | 332/22283 | 0.0009948 | 0.02547 | 0.0212 | 22 | 0.03112 |
GO:0005604 | basement membrane | 10/707 | 99/22283 | 0.001192 | 0.02907 | 0.0242 | 10 | 0.01414 |
GO:0098687 | chromosomal region | 26/707 | 428/22283 | 0.001296 | 0.03016 | 0.02511 | 26 | 0.03678 |
GO:0098685 | Schaffer collateral - CA1 synapse | 9/707 | 84/22283 | 0.001367 | 0.03043 | 0.02534 | 9 | 0.01273 |
GO:0031256 | leading edge membrane | 15/707 | 196/22283 | 0.001533 | 0.0327 | 0.02722 | 15 | 0.02122 |
GO:0044304 | main axon | 8/707 | 74/22283 | 0.002353 | 0.0482 | 0.04013 | 8 | 0.01132 |
GO:0030175 | filopodium | 11/707 | 128/22283 | 0.00257 | 0.05061 | 0.04214 | 11 | 0.01556 |
GO:0098984 | neuron to neuron synapse | 23/707 | 383/22283 | 0.002772 | 0.05256 | 0.04376 | 23 | 0.03253 |
GO:0097060 | synaptic membrane | 24/707 | 408/22283 | 0.002959 | 0.0541 | 0.04505 | 24 | 0.03395 |
GO:0005828 | kinetochore microtubule | 4/707 | 20/22283 | 0.003246 | 0.0573 | 0.04771 | 4 | 0.005658 |
GO:0098791 | Golgi apparatus subcompartment | 27/707 | 484/22283 | 0.003501 | 0.05948 | 0.04953 | 27 | 0.03819 |
GO:1990752 | microtubule end | 5/707 | 33/22283 | 0.003601 | 0.05948 | 0.04953 | 5 | 0.007072 |
GO:0036157 | outer dynein arm | 3/707 | 11/22283 | 0.004337 | 0.06939 | 0.05778 | 3 | 0.004243 |
GO:0099240 | intrinsic component of synaptic membrane | 13/707 | 179/22283 | 0.004791 | 0.07433 | 0.06189 | 13 | 0.01839 |
GO:0005643 | nuclear pore | 9/707 | 102/22283 | 0.005152 | 0.07563 | 0.06297 | 9 | 0.01273 |
GO:0008076 | voltage-gated potassium channel complex | 8/707 | 84/22283 | 0.00517 | 0.07563 | 0.06297 | 8 | 0.01132 |
GO:0030673 | axolemma | 4/707 | 23/22283 | 0.005502 | 0.07825 | 0.06515 | 4 | 0.005658 |
GO:0031252 | cell leading edge | 25/707 | 457/22283 | 0.006172 | 0.08317 | 0.06925 | 25 | 0.03536 |
GO:0032589 | neuron projection membrane | 7/707 | 69/22283 | 0.006173 | 0.08317 | 0.06925 | 7 | 0.009901 |
GO:0099061 | integral component of postsynaptic density membrane | 6/707 | 53/22283 | 0.006459 | 0.08434 | 0.07023 | 6 | 0.008487 |
GO:0031253 | cell projection membrane | 22/707 | 388/22283 | 0.006589 | 0.08434 | 0.07023 | 22 | 0.03112 |
GO:0001917 | photoreceptor inner segment | 7/707 | 72/22283 | 0.007772 | 0.09507 | 0.07916 | 7 | 0.009901 |
GO:0016528 | sarcoplasm | 8/707 | 90/22283 | 0.007799 | 0.09507 | 0.07916 | 8 | 0.01132 |
GO:0099146 | intrinsic component of postsynaptic density membrane | 6/707 | 56/22283 | 0.008436 | 0.1005 | 0.08364 | 6 | 0.008487 |
GO:0000781 | chromosome, telomeric region | 13/707 | 193/22283 | 0.008848 | 0.1024 | 0.08522 | 13 | 0.01839 |
GO:0016529 | sarcoplasmic reticulum | 7/707 | 74/22283 | 0.008996 | 0.1024 | 0.08522 | 7 | 0.009901 |
GO:0032279 | asymmetric synapse | 20/707 | 357/22283 | 0.01052 | 0.1171 | 0.09747 | 20 | 0.02829 |
GO:0097730 | non-motile cilium | 12/707 | 178/22283 | 0.01155 | 0.1258 | 0.1048 | 12 | 0.01697 |
GO:0034704 | calcium channel complex | 7/707 | 78/22283 | 0.01186 | 0.1265 | 0.1053 | 7 | 0.009901 |
GO:0030016 | myofibril | 15/707 | 246/22283 | 0.01232 | 0.1287 | 0.1072 | 15 | 0.02122 |
GO:0098831 | presynaptic active zone cytoplasmic component | 3/707 | 16/22283 | 0.01308 | 0.1308 | 0.1089 | 3 | 0.004243 |
GO:0099060 | integral component of postsynaptic specialization membrane | 7/707 | 80/22283 | 0.01351 | 0.1308 | 0.1089 | 7 | 0.009901 |
GO:0042734 | presynaptic membrane | 11/707 | 161/22283 | 0.01389 | 0.1308 | 0.1089 | 11 | 0.01556 |
GO:0097731 | 9+0 non-motile cilium | 10/707 | 140/22283 | 0.01393 | 0.1308 | 0.1089 | 10 | 0.01414 |
GO:0030017 | sarcomere | 14/707 | 227/22283 | 0.01395 | 0.1308 | 0.1089 | 14 | 0.0198 |
GO:0098839 | postsynaptic density membrane | 8/707 | 100/22283 | 0.01425 | 0.1308 | 0.1089 | 8 | 0.01132 |
GO:0030863 | cortical cytoskeleton | 9/707 | 120/22283 | 0.0143 | 0.1308 | 0.1089 | 9 | 0.01273 |
GO:0098688 | parallel fiber to Purkinje cell synapse | 3/707 | 17/22283 | 0.01552 | 0.1394 | 0.116 | 3 | 0.004243 |
GO:0098948 | intrinsic component of postsynaptic specialization membrane | 7/707 | 83/22283 | 0.01629 | 0.1424 | 0.1186 | 7 | 0.009901 |
GO:0099572 | postsynaptic specialization | 20/707 | 374/22283 | 0.0167 | 0.1424 | 0.1186 | 20 | 0.02829 |
GO:0032588 | trans-Golgi network membrane | 11/707 | 166/22283 | 0.01709 | 0.1424 | 0.1186 | 11 | 0.01556 |
GO:0043292 | contractile fiber | 15/707 | 256/22283 | 0.01712 | 0.1424 | 0.1186 | 15 | 0.02122 |
GO:0014069 | postsynaptic density | 19/707 | 351/22283 | 0.01725 | 0.1424 | 0.1186 | 19 | 0.02687 |
GO:0099699 | integral component of synaptic membrane | 11/707 | 168/22283 | 0.01851 | 0.1504 | 0.1252 | 11 | 0.01556 |
GO:0032587 | ruffle membrane | 8/707 | 106/22283 | 0.01962 | 0.157 | 0.1307 | 8 | 0.01132 |
GO:0001726 | ruffle | 12/707 | 194/22283 | 0.02135 | 0.1641 | 0.1366 | 12 | 0.01697 |
GO:0031965 | nuclear membrane | 18/707 | 335/22283 | 0.02144 | 0.1641 | 0.1366 | 18 | 0.02546 |
GO:0098862 | cluster of actin-based cell projections | 11/707 | 172/22283 | 0.02162 | 0.1641 | 0.1366 | 11 | 0.01556 |
GO:0098982 | GABA-ergic synapse | 7/707 | 88/22283 | 0.02179 | 0.1641 | 0.1366 | 7 | 0.009901 |
GO:0098686 | hippocampal mossy fiber to CA3 synapse | 4/707 | 35/22283 | 0.02414 | 0.1774 | 0.1477 | 4 | 0.005658 |
GO:0033276 | transcription factor TFTC complex | 3/707 | 20/22283 | 0.02425 | 0.1774 | 0.1477 | 3 | 0.004243 |
GO:0031594 | neuromuscular junction | 6/707 | 71/22283 | 0.02507 | 0.1782 | 0.1484 | 6 | 0.008487 |
GO:0035869 | ciliary transition zone | 6/707 | 71/22283 | 0.02507 | 0.1782 | 0.1484 | 6 | 0.008487 |
GO:0005790 | smooth endoplasmic reticulum | 4/707 | 36/22283 | 0.0265 | 0.1858 | 0.1547 | 4 | 0.005658 |
GO:0045211 | postsynaptic membrane | 16/707 | 296/22283 | 0.02759 | 0.1887 | 0.1571 | 16 | 0.02263 |
GO:0032426 | stereocilium tip | 3/707 | 21/22283 | 0.02764 | 0.1887 | 0.1571 | 3 | 0.004243 |
GO:0031672 | A band | 4/707 | 37/22283 | 0.02899 | 0.1953 | 0.1626 | 4 | 0.005658 |
GO:0099023 | vesicle tethering complex | 6/707 | 74/22283 | 0.02998 | 0.1993 | 0.166 | 6 | 0.008487 |
GO:0033162 | melanosome membrane | 3/707 | 22/22283 | 0.03127 | 0.2001 | 0.1666 | 3 | 0.004243 |
GO:0045009 | chitosome | 3/707 | 22/22283 | 0.03127 | 0.2001 | 0.1666 | 3 | 0.004243 |
GO:0090741 | pigment granule membrane | 3/707 | 22/22283 | 0.03127 | 0.2001 | 0.1666 | 3 | 0.004243 |
GO:0032154 | cleavage furrow | 5/707 | 56/22283 | 0.03206 | 0.2026 | 0.1687 | 5 | 0.007072 |
GO:0030018 | Z disc | 9/707 | 139/22283 | 0.03331 | 0.208 | 0.1732 | 9 | 0.01273 |
GO:0099738 | cell cortex region | 4/707 | 39/22283 | 0.03437 | 0.2116 | 0.1762 | 4 | 0.005658 |
GO:0000242 | pericentriolar material | 3/707 | 23/22283 | 0.03513 | 0.2116 | 0.1762 | 3 | 0.004243 |
GO:0035371 | microtubule plus-end | 3/707 | 23/22283 | 0.03513 | 0.2116 | 0.1762 | 3 | 0.004243 |
GO:0016459 | myosin complex | 5/707 | 58/22283 | 0.03655 | 0.2157 | 0.1796 | 5 | 0.007072 |
GO:0032153 | cell division site | 6/707 | 78/22283 | 0.03744 | 0.2157 | 0.1796 | 6 | 0.008487 |
GO:0032437 | cuticular plate | 2/707 | 10/22283 | 0.03821 | 0.2157 | 0.1796 | 2 | 0.002829 |
GO:0098981 | cholinergic synapse | 2/707 | 10/22283 | 0.03821 | 0.2157 | 0.1796 | 2 | 0.002829 |
GO:0099569 | presynaptic cytoskeleton | 2/707 | 10/22283 | 0.03821 | 0.2157 | 0.1796 | 2 | 0.002829 |
GO:0005858 | axonemal dynein complex | 3/707 | 24/22283 | 0.03923 | 0.2157 | 0.1796 | 3 | 0.004243 |
GO:0031430 | M band | 3/707 | 24/22283 | 0.03923 | 0.2157 | 0.1796 | 3 | 0.004243 |
GO:0032433 | filopodium tip | 3/707 | 24/22283 | 0.03923 | 0.2157 | 0.1796 | 3 | 0.004243 |
GO:0019898 | extrinsic component of membrane | 17/707 | 335/22283 | 0.03961 | 0.2157 | 0.1796 | 17 | 0.02405 |
GO:0033017 | sarcoplasmic reticulum membrane | 4/707 | 41/22283 | 0.04029 | 0.2171 | 0.1808 | 4 | 0.005658 |
GO:0005819 | spindle | 22/707 | 465/22283 | 0.04171 | 0.2209 | 0.1839 | 22 | 0.03112 |
GO:0031233 | intrinsic component of external side of plasma membrane | 3/707 | 25/22283 | 0.04356 | 0.2209 | 0.1839 | 3 | 0.004243 |
GO:0045171 | intercellular bridge | 7/707 | 102/22283 | 0.04369 | 0.2209 | 0.1839 | 7 | 0.009901 |
GO:0000276 | mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) | 2/707 | 11/22283 | 0.04573 | 0.2209 | 0.1839 | 2 | 0.002829 |
GO:0000815 | ESCRT III complex | 2/707 | 11/22283 | 0.04573 | 0.2209 | 0.1839 | 2 | 0.002829 |
These plots show connections among categories:
Enrichment map. Categories are connected by genes in common. Dot size indicates number of genes, dot color indicates adjusted p value.
Gene-concept network. Categories (brown dots) are linked by genes in common (gray dots). The size of category dots indicates gene count.
No significant results were found in DO.
Here it is a barplot of most significantly enriched NCG categories.
Barplot for enriched categories. Values on top have lower p values.
The most significant category was pancreatic_ductal_adenocarcinoma.