TE analysis report

Note: Insertion ids mentioned in this report are for internal use (not linked to any database) and will change if the pipeline is re-run.

1 General figures

1.1 Filtering criteria

1.1.1 Lax criterion

Note: A “unique” insertion is the merged result after the allele-aware merging from both callers for each patient, and then merged across patients. If we were working with SNPs, a “unique” SNP would be, rs123, for example, defined by its position and alternative(s) allele(s). A unique insertion is defined by its position, length, and inserted sequence.

The analysis has identified:

• 2 798 unique TE insertions, which amount to a total of 5 152 occurrences among all samples.
• With any insertion appearing on 1.8 ± 0.37 samples (median of 2 occurrences/insertion).
• The average insertion count per case is 2 576 ± 31.1.

1.1.2 Strict criterion

The stringent criterion (both callers) has left:

• 2 057 TE insertions.
• A total of 3 930 calls across cases.
• A mean prevalence of 1.9 ± 0.29.
• The median prevalence is 2.
• Each sample carries an average of 1 965 ± 7.1 TE insertions.

1.2 Genotyping

• 146 unique insertions that passed the stringent filtering. (7.1% of the total unique insertions), had at least one occurrence genotyped as 0/0.

• These amount to 197 total count (5.0% of filter-passing occurrences).

• 103 of these unique insertions were genotyped as 0/0 for all their occurrences, amounting to 154 insertion counts.

• Of these fully wrong calls, 52 were only found on a single patient each (50.5% of the 103).

• The strict criteria missed calls for 77 unique insertions (3.7%).

• These mean a total of 77 occurrences, out of 3 930 calls that passed the stringent filter.

• 77 unique insertions had more false negative occurrences than positive ones.

The discrepancies between genotyping and the lax filtering is also summarized in the table below.

Note: for true/false poitives/negatives, the genotypes have considered the gold standard.

Criterion	Unique INS with false positives (%)	Total false positives (%)	Unique INS (total) with all false positives	Unique INS with false negatives (%)	Total false negatives (Total positives)	Unique INS with more false negatives than positives
Strict	146 ( 7.1)	197 (5.0)	103 (154)	77 (3.7)	77 (3 930)	77
Lax	353 (12.6)	465 (9.0)	289 (401)	0 (0.0)	0 (5 152)	0

The next sections only take into account insertions that passed the strict criterion on at least one sample, and that were not genotyped as 0/0 on all samples.

1.2.1 Allele frequency

1.2.2 Ubiquitous TE insertions

1.2.2.1 Ubiquitous TE insertions

568 TE insertions were found on all cases in homozygosis.

Click to show table with 568 rows.

Position	Length	Type	AF
CP068277.2:6 326 450	176	SINE (AluYb8)	1
CP068277.2:20 992 774	315	SINE (AluYa5)	1
CP068277.2:37 641 313	47	Retroposon (SVA_F)	1
CP068277.2:42 148 108	312	SINE (AluYa5)	1
CP068277.2:46 119 444	47	Retroposon (SVA_F)	1
CP068277.2:48 071 779	170	Retroposon (SVA_A)	1
CP068277.2:65 547 882	321	SINE (AluY)	1
CP068277.2:78 774 660	319	SINE (AluYi6)	1
CP068277.2:79 487 048	317	SINE (AluYa5)	1
CP068277.2:80 540 755	65	LINE (L1P2)	1
CP068277.2:81 683 953	322	SINE (AluYb8)	1
CP068277.2:97 099 968	324	SINE (AluYk3)	1
CP068277.2:104 553 877	318	SINE (AluYa5)	1
CP068277.2:111 310 361	61	LINE (L1P3)	1
CP068277.2:115 265 714	279	SINE (AluYa5)	1
CP068277.2:117 439 865	79	Retroposon (SVA_A)	1
CP068277.2:149 905 532	87	Retroposon (SVA_A)	1
CP068277.2:160 560 569	359	Retroposon (SVA_A)	1
CP068277.2:166 450 102	62	LTR (MLT1C2)	1
CP068277.2:168 747 175	42	LTR (PABL_A)	1
CP068277.2:178 877 824	352	SINE (AluYb9)	1
CP068277.2:180 243 610	320	SINE (AluYa5)	1
CP068277.2:190 958 084	324	SINE (AluYa5)	1
CP068277.2:192 243 097	39	LTR (LTR12D)	1
CP068277.2:194 052 174	328	SINE (AluYa5)	1
CP068277.2:199 161 462	45	Retroposon (SVA_F)	1
CP068277.2:205 230 886	313	SINE (AluYa5)	1
CP068277.2:211 436 465	39	Retroposon (SVA_E)	1
CP068277.2:211 713 734	84	SINE (AluSx)	1
CP068277.2:216 822 048	301	SINE (AluYb9)	1
CP068277.2:221 931 096	328	SINE (AluYb8)	1
CP068277.2:244 330 607	115	SINE (AluYa5)	1
CP068276.2:1 198 288	306	SINE (AluY)	1
CP068276.2:1 468 423	329	SINE (AluY)	1
CP068276.2:10 932 624	145	Retroposon (SVA_F)	1
CP068276.2:13 196 975	46	LTR (HERVH-int)	1
CP068276.2:13 955 735	74	LTR (MER57-int)	1
CP068276.2:20 500 541	307	SINE (AluYa5)	1
CP068276.2:34 814 746	241	SINE (AluYa5)	1
CP068276.2:42 610 850	302	Retroposon (SVA_F)	1
CP068276.2:44 604 010	316	SINE (AluYa5)	1
CP068276.2:46 682 545	49	SINE (Alu)	1
CP068276.2:50 018 018	132	SINE (AluSc8)	1
CP068276.2:54 440 636	320	SINE (AluY)	1
CP068276.2:54 460 543	248	SINE (AluY)	1
CP068276.2:65 116 309	304	SINE (AluYc)	1
CP068276.2:76 039 744	233	SINE (AluYb8)	1
CP068276.2:80 542 014	269	SINE (AluYa5)	1
CP068276.2:99 438 516	45	LINE (L1P1)	1
CP068276.2:100 904 185	61	LINE (L1MD)	1
CP068276.2:102 198 725	315	SINE (AluYa5)	1
CP068276.2:106 297 452	316	SINE (AluYe5)	1
CP068276.2:107 771 785	320	SINE (AluYa5)	1
CP068276.2:111 709 562	329	SINE (AluYa5)	1
CP068276.2:123 569 366	133	SINE (AluSp)	1
CP068276.2:123 667 376	330	SINE (AluYb8)	1
CP068276.2:133 554 576	319	SINE (AluY)	1
CP068276.2:137 865 383	60	SINE (AluYb8)	1
CP068276.2:169 505 778	321	SINE (AluYb8)	1
CP068276.2:170 052 490	47	Retroposon (SVA_F)	1
CP068276.2:173 773 579	311	SINE (AluYa5)	1
CP068276.2:174 574 715	172	Retroposon (SVA_A)	1
CP068276.2:174 574 791	174	Retroposon (SVA_A)	1
CP068276.2:174 575 385	40	Retroposon (SVA_F)	1
CP068276.2:175 359 957	318	SINE (AluYa5)	1
CP068276.2:177 936 293	333	SINE (AluYb8)	1
CP068276.2:177 969 023	340	SINE (AluYb8)	1
CP068276.2:184 038 383	33	LINE (L1P4)	1
CP068276.2:191 887 362	477	Retroposon (SVA_F)	1
CP068276.2:192 183 561	317	SINE (AluY)	1
CP068276.2:192 186 024	322	SINE (AluYa5)	1
CP068276.2:198 382 298	311	SINE (AluYa5)	1
CP068276.2:198 513 690	137	SINE (AluSg)	1
CP068276.2:200 963 887	44	SINE (FRAM)	1
CP068276.2:201 167 229	46	Retroposon (SVA_F)	1
CP068276.2:215 319 683	76	Retroposon (SVA_F)	1
CP068276.2:215 369 783	157	SINE (AluYb9)	1
CP068276.2:216 169 155	326	SINE (AluYb8)	1
CP068276.2:216 174 633	132	SINE (AluJo)	1
CP068276.2:217 798 533	304	SINE (AluYb8)	1
CP068276.2:241 341 649	103	LTR (LTR10F)	1
CP068275.2:2 584 962	314	SINE (AluYa5)	1
CP068275.2:12 308 635	308	SINE (AluYa5)	1
CP068275.2:17 692 738	322	SINE (AluYa5)	1
CP068275.2:17 706 756	146	Retroposon (SVA_F)	1
CP068275.2:20 459 977	66	LTR (LTR25-int)	1
CP068275.2:25 252 739	71	LINE (L1M2)	1
CP068275.2:28 128 297	324	SINE (AluYb8)	1
CP068275.2:29 581 547	321	SINE (AluYb8)	1
CP068275.2:32 376 221	148	SINE (AluJb)	1
CP068275.2:32 897 377	95	LINE (L1M4)	1
CP068275.2:49 529 100	37	SINE (Alu)	1
CP068275.2:50 871 697	331	SINE (AluY)	1
CP068275.2:51 280 054	77	Retroposon (SVA_D)	1
CP068275.2:58 327 251	43	Retroposon (SVA_B)	1
CP068275.2:65 941 604	35	LINE (L1PA6)	1
CP068275.2:66 961 938	131	LINE (L1P3)	1
CP068275.2:67 489 000	97	Retroposon (SVA_F)	1
CP068275.2:82 376 966	107	LTR (MER4E1)	1
CP068275.2:87 545 867	279	SINE (AluYa5)	1
CP068275.2:98 099 916	327	SINE (AluYb8)	1
CP068275.2:114 926 706	49	LINE (L1P3)	1
CP068275.2:124 033 267	47	Retroposon (SVA_F)	1
CP068275.2:132 084 525	47	Retroposon (SVA_F)	1
CP068275.2:132 210 422	306	SINE (AluYb8)	1
CP068275.2:136 876 080	57	LINE (L1MCa)	1
CP068275.2:146 222 567	314	SINE (AluYa5)	1
CP068275.2:152 911 714	303	SINE (AluY)	1
CP068275.2:169 427 751	340	SINE (AluYa5)	1
CP068275.2:169 455 669	312	SINE (AluY)	1
CP068275.2:174 782 688	118	LTR (LTR12C)	1
CP068275.2:177 480 228	321	SINE (AluYb8)	1
CP068275.2:181 196 484	329	SINE (AluYb8)	1
CP068275.2:189 692 114	77	Retroposon (SVA_F)	1
CP068274.2:544 007	160	Retroposon (SVA_D)	1
CP068274.2:1 306 582	317	SINE (AluYk2)	1
CP068274.2:1 318 269	132	SINE (AluJb)	1
CP068274.2:2 760 310	75	LINE (L2b)	1
CP068274.2:4 327 276	132	LINE (L1MB3)	1
CP068274.2:8 373 198	159	SINE (AluSc8)	1
CP068274.2:9 950 437	246	SINE (AluY)	1
CP068274.2:9 954 701	315	SINE (AluY)	1
CP068274.2:31 814 716	308	SINE (AluYg6)	1
CP068274.2:38 777 883	75	Retroposon (SVA_B)	1
CP068274.2:38 778 074	180	Retroposon (SVA_F)	1
CP068274.2:40 044 378	36	SINE (AluSx4)	1
CP068274.2:45 425 666	39	LTR (LTR12E)	1
CP068274.2:47 461 846	314	SINE (AluYb8)	1
CP068274.2:47 509 431	333	SINE (AluY)	1
CP068274.2:56 743 495	35	Retroposon (SVA_A)	1
CP068274.2:58 620 850	323	SINE (AluYb8)	1
CP068274.2:59 545 987	195	SINE (AluYc)	1
CP068274.2:70 824 821	73	Retroposon (SVA_A)	1
CP068274.2:73 581 961	186	LINE (L1PA2)	1
CP068274.2:85 588 188	303	SINE (AluY)	1
CP068274.2:88 719 288	308	SINE (AluYa5)	1
CP068274.2:88 913 506	72	LINE (L1HS)	1
CP068274.2:89 207 100	34	SINE (Alu)	1
CP068274.2:98 264 406	317	SINE (AluYb8)	1
CP068274.2:107 135 388	303	SINE (AluYa5)	1
CP068274.2:109 710 152	63	LINE (L1M4c)	1
CP068274.2:119 633 332	317	SINE (AluYa5)	1
CP068274.2:122 158 905	317	SINE (AluYa5)	1
CP068274.2:123 965 285	325	SINE (AluYb8)	1
CP068274.2:124 831 133	180	SINE (AluYc)	1
CP068274.2:137 323 693	306	SINE (AluY)	1
CP068274.2:137 531 575	327	SINE (AluYe5)	1
CP068274.2:145 008 457	48	LTR (THE1D)	1
CP068274.2:153 984 117	97	Retroposon (SVA_F)	1
CP068274.2:154 329 485	40	SINE (Alu)	1
CP068274.2:154 538 658	126	Retroposon (SVA_F)	1
CP068274.2:166 928 648	314	SINE (AluYb8)	1
CP068274.2:168 367 484	122	Retroposon (SVA_F)	1
CP068274.2:168 367 843	39	Retroposon (SVA_C)	1
CP068274.2:171 244 192	111	LTR (MER4A)	1
CP068274.2:173 524 232	36	Retroposon (SVA_D)	1
CP068274.2:173 865 119	316	SINE (AluYb8)	1
CP068274.2:177 630 266	311	SINE (AluYe5)	1
CP068274.2:184 287 164	225	Retroposon (SVA_F)	1
CP068274.2:186 157 093	179	LTR (HERVH-int)	1
CP068274.2:186 384 593	39	Retroposon (SVA_C)	1
CP068274.2:191 741 144	315	SINE (AluY)	1
CP068274.2:192 864 879	151	LINE (L1M4)	1
CP068273.2:1 499 358	314	SINE (AluY)	1
CP068273.2:1 857 114	310	SINE (AluYb8)	1
CP068273.2:4 000 765	319	SINE (AluYa5)	1
CP068273.2:16 635 829	43	SINE (Alu)	1
CP068273.2:16 655 697	310	SINE (AluYg6)	1
CP068273.2:24 017 957	285	SINE (AluY)	1
CP068273.2:25 758 140	221	LINE (L1P1)	1
CP068273.2:34 235 086	321	SINE (AluYa5)	1
CP068273.2:38 033 737	92	LTR (Harlequin-int)	1
CP068273.2:46 415 440	333	SINE (AluY)	1
CP068273.2:63 640 729	57	LINE (L1P1)	1
CP068273.2:66 799 023	345	Retroposon (SVA_F)	1
CP068273.2:77 294 344	48	Retroposon (SVA_F)	1
CP068273.2:78 760 230	285	SINE (AluYa5)	1
CP068273.2:98 972 628	23	LTR (LTR12D)	1
CP068273.2:103 260 583	40	LTR (LTR12E)	1
CP068273.2:114 448 514	78	LTR (LTR62)	1
CP068273.2:118 013 084	308	SINE (AluY)	1
CP068273.2:121 495 295	313	SINE (AluYa5)	1
CP068273.2:125 897 920	320	SINE (AluY)	1
CP068273.2:133 628 749	50	Retroposon (SVA_F)	1
CP068273.2:134 951 038	300	SINE (AluYa5)	1
CP068273.2:138 669 937	65	LTR (LTR12)	1
CP068273.2:139 924 858	295	SINE (AluSx)	1
CP068273.2:147 656 992	41	LINE (L1M2)	1
CP068273.2:150 072 540	323	SINE (AluYa5)	1
CP068273.2:159 694 188	322	SINE (AluYa5)	1
CP068273.2:159 818 649	314	SINE (AluYa5)	1
CP068273.2:163 339 537	314	SINE (AluY)	1
CP068273.2:180 746 045	172	SINE (AluY)	1
CP068273.2:181 314 056	266	LINE (L1P1)	1
CP068272.2:7 310 938	81	LTR (LTR12D)	1
CP068272.2:8 944 499	317	SINE (AluYg6)	1
CP068272.2:9 939 215	312	SINE (AluYa5)	1
CP068272.2:10 902 109	135	SINE (AluSz)	1
CP068272.2:13 394 505	329	SINE (AluYb8)	1
CP068272.2:18 218 651	309	SINE (AluYa5)	1
CP068272.2:19 027 502	323	SINE (AluYb9)	1
CP068272.2:19 295 205	236	SINE (AluYa5)	1
CP068272.2:21 225 613	78	SINE (AluYb8)	1
CP068272.2:28 879 239	100	SINE (AluYi6)	1
CP068272.2:30 339 365	38	Retroposon (SVA_C)	1
CP068272.2:30 680 491	159	LTR (LTR12C)	1
CP068272.2:32 628 076	314	SINE (AluYa5)	1
CP068272.2:38 788 684	46	Retroposon (SVA_F)	1
CP068272.2:41 265 665	320	SINE (AluYf1)	1
CP068272.2:43 757 249	316	SINE (AluYa5)	1
CP068272.2:53 584 806	282	SINE (AluY)	1
CP068272.2:62 724 632	132	SINE (AluSp)	1
CP068272.2:74 701 972	42	SINE (Alu)	1
CP068272.2:74 838 887	38	Retroposon (SVA_B)	1
CP068272.2:76 425 221	316	SINE (AluYa5)	1
CP068272.2:76 483 634	49	SINE (Alu)	1
CP068272.2:82 796 743	321	SINE (AluY)	1
CP068272.2:83 853 159	57	LINE (L1P1)	1
CP068272.2:84 185 928	312	SINE (AluYa5)	1
CP068272.2:86 651 704	331	SINE (AluY)	1
CP068272.2:97 741 692	322	SINE (AluYb8)	1
CP068272.2:103 685 614	315	SINE (AluYa5)	1
CP068272.2:105 950 363	311	SINE (AluY)	1
CP068272.2:107 085 594	53	DNA (MER58A)	1
CP068272.2:109 208 497	105	SINE (AluJb)	1
CP068272.2:115 951 897	105	SINE (AluSc)	1
CP068272.2:123 028 931	102	LINE (L2a)	1
CP068272.2:124 036 735	127	Retroposon (SVA_F)	1
CP068272.2:126 080 527	40	LTR (LTR12C)	1
CP068272.2:137 339 890	70	SINE (AluSg)	1
CP068272.2:138 121 232	277	SINE (AluYa5)	1
CP068272.2:138 607 851	30	SINE (Alu)	1
CP068272.2:155 567 174	274	SINE (AluY)	1
CP068272.2:159 090 611	38	LTR (LTR8)	1
CP068272.2:164 958 990	303	SINE (AluY)	1
CP068271.2:2 674 652	107	SINE (AluSq)	1
CP068271.2:4 506 976	47	Retroposon (SVA_B)	1
CP068271.2:7 023 835	58	LTR (HERVH-int)	1
CP068271.2:12 396 185	31	SINE (AluSg)	1
CP068271.2:15 262 062	60	LTR (MER89)	1
CP068271.2:20 804 211	47	Retroposon (SVA_F)	1
CP068271.2:23 192 907	51	LINE (L1MC)	1
CP068271.2:29 929 697	37	LTR (HERVH-int)	1
CP068271.2:39 867 656	331	SINE (AluYb8)	1
CP068271.2:45 911 340	323	SINE (AluYa5)	1
CP068271.2:48 018 072	323	SINE (AluYa5)	1
CP068271.2:52 200 515	315	SINE (AluYg6)	1
CP068271.2:54 800 608	60	SINE (Alu)	1
CP068271.2:55 943 911	304	SINE (AluY)	1
CP068271.2:56 334 427	321	SINE (AluYb8)	1
CP068271.2:57 541 048	323	SINE (AluYb8)	1
CP068271.2:64 353 162	77	LINE (L1HS)	1
CP068271.2:65 627 675	324	SINE (AluY)	1
CP068271.2:66 174 198	446	Retroposon (SVA_F)	1
CP068271.2:66 174 413	442	Retroposon (SVA_F)	1
CP068271.2:69 749 646	44	SINE (Alu)	1
CP068271.2:76 011 796	192	SINE (AluYa5)	1
CP068271.2:78 216 802	318	SINE (AluYa5)	1
CP068271.2:84 568 345	317	SINE (AluYg6)	1
CP068271.2:86 522 262	268	LINE (L1HS)	1
CP068271.2:96 385 565	327	SINE (AluY)	1
CP068271.2:98 495 109	242	SINE (AluYa5)	1
CP068271.2:98 998 843	187	SINE (AluYb9)	1
CP068271.2:109 361 785	120	SINE (AluY)	1
CP068271.2:110 968 118	326	SINE (AluYb8)	1
CP068271.2:112 163 030	96	LINE (L1HS)	1
CP068271.2:121 741 950	31	SINE (Alu)	1
CP068271.2:130 830 383	317	SINE (AluSx)	1
CP068271.2:132 541 792	144	SINE (AluJb)	1
CP068271.2:133 487 650	328	SINE (AluY)	1
CP068271.2:135 973 338	419	LINE (L1HS)	1
CP068271.2:137 801 343	329	SINE (AluYe5)	1
CP068271.2:138 459 440	311	SINE (AluYc)	1
CP068271.2:138 476 358	310	SINE (AluYa5)	1
CP068271.2:149 591 887	134	SINE (AluYk11)	1
CP068271.2:149 923 445	134	SINE (AluSz)	1
CP068271.2:150 461 890	47	Retroposon (SVA_F)	1
CP068271.2:152 200 515	52	LTR (LTR5_Hs)	1
CP068271.2:153 713 300	130	SINE (AluSx)	1
CP068270.2:1 867 928	44	SINE (Alu)	1
CP068270.2:4 117 692	328	SINE (AluYa5)	1
CP068270.2:4 348 133	94	LINE (L1HS)	1
CP068270.2:14 297 255	87	SINE (AluSq10)	1
CP068270.2:34 175 409	284	SINE (AluY)	1
CP068270.2:34 580 253	67	LINE (L1M3)	1
CP068270.2:41 686 990	334	SINE (AluYb8)	1
CP068270.2:51 522 000	311	SINE (AluYa5)	1
CP068270.2:51 532 738	48	Retroposon (SVA_F)	1
CP068270.2:51 604 351	118	LTR (LTR12C)	1
CP068270.2:54 436 680	313	SINE (AluYb8)	1
CP068270.2:55 866 231	315	SINE (AluYa5)	1
CP068270.2:58 587 319	330	SINE (AluY)	1
CP068270.2:60 716 533	315	SINE (AluYa5)	1
CP068270.2:72 074 693	329	SINE (AluYa5)	1
CP068270.2:87 184 808	320	SINE (AluYb8)	1
CP068270.2:90 822 117	47	Retroposon (SVA_F)	1
CP068270.2:102 018 473	39	Retroposon (SVA_E)	1
CP068270.2:121 797 875	317	SINE (AluY)	1
CP068270.2:132 282 389	312	SINE (AluY)	1
CP068270.2:132 464 747	323	SINE (AluY)	1
CP068270.2:132 610 630	39	LTR (LTR12E)	1
CP068270.2:135 985 556	112	LINE (L3)	1
CP068270.2:136 889 693	39	LTR (HERVH-int)	1
CP068269.2:2 353 936	315	SINE (AluY)	1
CP068269.2:6 664 829	135	SINE (AluY)	1
CP068269.2:7 855 153	327	SINE (AluYb9)	1
CP068269.2:9 145 491	320	SINE (AluYb8)	1
CP068269.2:19 378 518	95	SINE (AluYa5)	1
CP068269.2:28 208 722	312	SINE (AluYa5)	1
CP068269.2:29 465 381	190	LINE (L1HS)	1
CP068269.2:30 361 586	314	SINE (AluY)	1
CP068269.2:33 442 084	36	Retroposon (SVA_F)	1
CP068269.2:35 038 160	63	LINE (L1PA10)	1
CP068269.2:38 265 890	78	Retroposon (SVA_A)	1
CP068269.2:40 202 609	321	SINE (AluYa5)	1
CP068269.2:83 123 285	132	SINE (AluY)	1
CP068269.2:84 265 385	48	SINE (Alu)	1
CP068269.2:84 767 523	313	SINE (AluYa5)	1
CP068269.2:88 666 159	315	SINE (AluYb8)	1
CP068269.2:92 810 524	59	LINE (L1P2)	1
CP068269.2:95 422 400	36	Retroposon (SVA_A)	1
CP068269.2:102 597 254	306	SINE (AluYa5)	1
CP068269.2:112 443 781	81	SINE (AluSz)	1
CP068269.2:112 839 663	68	LTR (MER52A)	1
CP068269.2:119 842 404	312	SINE (AluYk2)	1
CP068269.2:124 311 519	315	SINE (AluYb9)	1
CP068269.2:138 384 259	298	LINE (L1M4)	1
CP068269.2:142 711 624	39	Retroposon (SVA_B)	1
CP068269.2:143 939 557	43	SINE (AluYi6)	1
CP068268.2:3 057 186	33	SINE (AluYh3)	1
CP068268.2:10 778 281	170	SINE (AluYc)	1
CP068268.2:13 230 543	312	SINE (AluYb8)	1
CP068268.2:14 722 876	64	LINE (L1MC)	1
CP068268.2:29 201 484	188	LTR (MLT1F-int)	1
CP068268.2:30 638 183	125	SINE (AluSx)	1
CP068268.2:53 450 889	81	LTR (MLT1J)	1
CP068268.2:60 550 872	127	Retroposon (SVA_F)	1
CP068268.2:67 440 301	327	SINE (AluY)	1
CP068268.2:72 740 845	39	Retroposon (SVA_D)	1
CP068268.2:72 746 623	47	Retroposon (SVA_F)	1
CP068268.2:72 773 055	313	SINE (AluYa5)	1
CP068268.2:76 207 675	48	Retroposon (SVA_F)	1
CP068268.2:87 790 483	326	SINE (AluY)	1
CP068268.2:88 939 111	319	SINE (AluYa5)	1
CP068268.2:97 658 629	311	SINE (AluYa5)	1
CP068268.2:97 822 125	48	Retroposon (SVA_F)	1
CP068268.2:102 921 216	141	Retroposon (SVA_E)	1
CP068268.2:107 018 348	141	SINE (FLAM_C)	1
CP068268.2:108 118 466	321	SINE (AluYa5)	1
CP068268.2:109 582 446	833	LINE (L1HS)	1
CP068268.2:113 205 090	311	SINE (AluY)	1
CP068268.2:123 851 455	318	SINE (AluY)	1
CP068267.2:473 330	320	SINE (AluYe5)	1
CP068267.2:8 515 636	30	SINE (AluSp)	1
CP068267.2:20 669 487	50	Retroposon (SVA_F)	1
CP068267.2:25 682 675	343	SINE (AluYa5)	1
CP068267.2:27 776 457	330	LTR (MER61E)	1
CP068267.2:58 403 047	325	SINE (AluYb8)	1
CP068267.2:58 991 318	330	SINE (AluYb8)	1
CP068267.2:60 485 034	78	LINE (L1HS)	1
CP068267.2:63 882 702	258	LINE (L1MB8)	1
CP068267.2:75 339 541	77	Retroposon (SVA_F)	1
CP068267.2:78 812 746	73	Retroposon (SVA_B)	1
CP068267.2:79 061 406	55	LTR (ERVL-B4-int)	1
CP068267.2:80 466 708	124	LTR (LTR12D)	1
CP068267.2:82 117 611	39	Retroposon (SVA_B)	1
CP068267.2:92 080 729	89	Retroposon (SVA_F)	1
CP068267.2:95 142 638	42	SINE (Alu)	1
CP068267.2:96 505 971	317	SINE (AluYk3)	1
CP068267.2:101 555 768	326	SINE (AluYb8)	1
CP068267.2:118 715 549	133	SINE (AluSx)	1
CP068267.2:119 529 515	48	Retroposon (SVA_F)	1
CP068267.2:125 878 132	153	LINE (L1PA10)	1
CP068266.2:4 668 545	310	SINE (AluYg6)	1
CP068266.2:5 668 025	298	SINE (AluYd8)	1
CP068266.2:6 807 792	255	SINE (AluYk2)	1
CP068266.2:7 694 453	129	SINE (AluSx)	1
CP068266.2:8 608 362	115	Retroposon (SVA_C)	1
CP068266.2:8 608 837	46	Retroposon (SVA_F)	1
CP068266.2:12 283 010	97	Retroposon (SVA_F)	1
CP068266.2:13 980 293	329	SINE (AluYb8)	1
CP068266.2:14 045 352	191	Retroposon (SVA_C)	1
CP068266.2:25 181 209	327	SINE (AluY)	1
CP068266.2:29 284 341	35	LINE (L1P1)	1
CP068266.2:29 543 251	312	SINE (AluYa5)	1
CP068266.2:37 920 130	325	SINE (AluYb9)	1
CP068266.2:37 921 040	317	SINE (AluY)	1
CP068266.2:38 276 130	41	Retroposon (SVA_F)	1
CP068266.2:38 279 973	45	Retroposon (SVA_B)	1
CP068266.2:38 940 562	337	LINE (L1P1)	1
CP068266.2:41 239 964	344	LINE (L1P3)	1
CP068266.2:43 644 065	126	Retroposon (SVA_F)	1
CP068266.2:48 293 798	196	Retroposon (SVA_F)	1
CP068266.2:48 294 118	36	Retroposon (SVA_F)	1
CP068266.2:49 751 836	85	SINE (AluY)	1
CP068266.2:64 182 833	84	LINE (L1PA11)	1
CP068266.2:71 111 190	320	SINE (AluYb9)	1
CP068266.2:77 423 086	101	SINE (MIRb)	1
CP068266.2:83 544 576	315	SINE (AluY)	1
CP068266.2:83 671 163	322	SINE (AluYb8)	1
CP068266.2:85 910 505	315	SINE (AluY)	1
CP068266.2:86 830 420	144	SINE (AluSx)	1
CP068266.2:87 458 392	320	SINE (AluY)	1
CP068266.2:93 946 035	317	SINE (AluY)	1
CP068266.2:96 952 164	305	SINE (AluYa5)	1
CP068266.2:101 881 504	101	SINE (AluYb8)	1
CP068266.2:104 884 820	186	SINE (AluYb9)	1
CP068266.2:121 990 178	439	Retroposon (SVA_E)	1
CP068266.2:126 429 324	326	SINE (AluYb8)	1
CP068266.2:126 723 341	318	SINE (AluYb8)	1
CP068265.2:22 184 435	327	SINE (AluY)	1
CP068265.2:25 455 895	315	SINE (AluY)	1
CP068265.2:41 908 589	236	SINE (AluY)	1
CP068265.2:45 366 989	317	SINE (AluYa5)	1
CP068265.2:49 104 638	47	LINE (L1PA8)	1
CP068265.2:56 231 795	114	SINE (AluY)	1
CP068265.2:57 263 121	290	SINE (AluYb9)	1
CP068265.2:68 684 135	323	SINE (AluYa5)	1
CP068265.2:69 509 381	322	SINE (AluYb8)	1
CP068265.2:77 302 799	314	SINE (AluYa5)	1
CP068265.2:78 735 172	314	SINE (AluYa5)	1
CP068265.2:82 608 311	220	SINE (AluYc)	1
CP068265.2:85 705 616	304	SINE (AluYa5)	1
CP068265.2:85 943 031	288	SINE (AluYa5)	1
CP068265.2:88 073 850	314	SINE (AluSc)	1
CP068265.2:88 953 729	326	SINE (AluY)	1
CP068265.2:98 181 350	134	SINE (AluYk2)	1
CP068265.2:107 842 849	60	LINE (L1M4)	1
CP068265.2:109 388 985	313	SINE (AluYb8)	1
CP068265.2:112 115 809	313	SINE (AluYa5)	1
CP068264.2:5 878 583	33	LTR (LTR6A)	1
CP068264.2:18 410 907	164	SINE (AluSx4)	1
CP068264.2:28 610 960	296	SINE (AluYa5)	1
CP068264.2:31 745 095	40	Retroposon (SVA_C)	1
CP068264.2:34 300 938	324	SINE (AluYa5)	1
CP068264.2:34 313 688	131	SINE (AluYe5)	1
CP068264.2:49 662 177	38	Retroposon (SVA_A)	1
CP068264.2:92 910 435	53	SINE (Alu)	1
CP068263.2:18 206 748	27	DNA (Tigger3c)	1
CP068263.2:25 673 162	392	LINE (L1HS)	1
CP068263.2:30 617 379	312	SINE (AluYc)	1
CP068263.2:34 360 211	346	SINE (AluYa5)	1
CP068263.2:38 489 390	36	Retroposon (SVA_F)	1
CP068263.2:53 913 580	201	Retroposon (SVA_D)	1
CP068263.2:58 168 194	311	SINE (AluYa5)	1
CP068263.2:58 727 456	322	SINE (AluY)	1
CP068263.2:67 938 502	312	SINE (AluYa5)	1
CP068263.2:75 994 840	163	SINE (AluSx4)	1
CP068263.2:78 233 814	315	SINE (AluY)	1
CP068263.2:82 606 621	317	SINE (AluYa5)	1
CP068263.2:92 385 824	305	SINE (AluYk2)	1
CP068263.2:97 321 467	49	SINE (Alu)	1
CP068262.2:4 839 789	41	SINE (Alu)	1
CP068262.2:5 231 896	79	Retroposon (SVA_F)	1
CP068262.2:11 372 260	247	Retroposon (SVA_A)	1
CP068262.2:15 116 748	85	SINE (AluSc)	1
CP068262.2:21 163 025	317	SINE (AluY)	1
CP068262.2:21 521 202	122	SINE (AluJb)	1
CP068262.2:26 873 866	336	SINE (AluY)	1
CP068262.2:31 557 109	48	Retroposon (SVA_F)	1
CP068262.2:62 994 200	43	SINE (AluJo)	1
CP068262.2:63 015 018	316	SINE (AluYa5)	1
CP068262.2:63 087 387	180	SINE (AluYa5)	1
CP068262.2:64 052 598	319	SINE (AluYa5)	1
CP068262.2:64 555 275	134	SINE (AluSz)	1
CP068262.2:64 559 334	55	SINE (AluSx3)	1
CP068262.2:83 862 431	133	SINE (AluSc8)	1
CP068262.2:86 496 712	314	SINE (AluYa5)	1
CP068262.2:88 229 527	35	DNA (Tigger3c)	1
CP068262.2:95 205 915	33	LINE (L1MD)	1
CP068262.2:95 699 163	42	SINE (FLAM_C)	1
CP068262.2:95 928 542	313	SINE (AluSx)	1
CP068261.2:285 540	345	SINE (AluYb8)	1
CP068261.2:3 000 911	39	Retroposon (SVA_D)	1
CP068261.2:3 001 300	39	Retroposon (SVA_D)	1
CP068261.2:4 300 934	257	LINE (L1HS)	1
CP068261.2:28 153 050	173	Retroposon (SVA_F)	1
CP068261.2:38 008 693	192	SINE (AluYc)	1
CP068261.2:45 034 219	255	Retroposon (SVA_F)	1
CP068261.2:55 582 093	670	LINE (L1PREC2)	1
CP068261.2:61 447 465	325	SINE (AluY)	1
CP068261.2:68 170 920	159	LTR (LTR12C)	1
CP068261.2:69 968 390	311	SINE (AluYa5)	1
CP068261.2:75 907 696	47	SINE (AluJr4)	1
CP068261.2:76 696 269	95	SINE (AluY)	1
CP068261.2:78 886 239	314	SINE (AluYg6)	1
CP068260.2:3 032 121	146	SINE (AluYk2)	1
CP068260.2:9 097 970	101	LTR (LTR12C)	1
CP068260.2:9 564 592	322	SINE (AluYa5)	1
CP068260.2:14 173 520	35	Retroposon (SVA_F)	1
CP068260.2:28 466 226	349	SINE (AluY)	1
CP068260.2:35 273 621	317	SINE (AluYa5)	1
CP068260.2:39 128 267	316	SINE (AluYa5)	1
CP068260.2:46 361 667	327	SINE (AluYb8)	1
CP068260.2:46 381 044	31	SINE (Alu)	1
CP068260.2:53 996 308	73	LINE (L1PBa)	1
CP068260.2:54 439 434	166	LINE (L1HS)	1
CP068260.2:56 003 038	320	SINE (AluYa5)	1
CP068260.2:57 710 913	314	SINE (AluSp)	1
CP068260.2:64 814 676	174	Retroposon (SVA_F)	1
CP068260.2:68 770 943	325	SINE (AluYb9)	1
CP068260.2:71 698 063	53	LINE (L1P3b)	1
CP068260.2:76 087 428	323	SINE (AluYb8)	1
CP068260.2:77 079 847	311	SINE (AluYk2)	1
CP068259.2:646 264	71	SINE (AluSp)	1
CP068259.2:1 895 198	134	SINE (AluJb)	1
CP068259.2:6 976 774	325	SINE (AluY)	1
CP068259.2:16 099 582	316	SINE (AluY)	1
CP068259.2:16 391 116	140	SINE (AluJb)	1
CP068259.2:17 727 863	50	LTR (LTR7)	1
CP068259.2:31 262 878	598	LINE (L1P4)	1
CP068259.2:36 653 349	175	Retroposon (SVA_F)	1
CP068259.2:49 705 356	83	SINE (AluSc8)	1
CP068259.2:53 674 285	100	SINE (AluJb)	1
CP068259.2:54 049 533	135	SINE (AluSx)	1
CP068258.2:996 590	101	LINE (L2a)	1
CP068258.2:5 544 074	303	SINE (AluYc)	1
CP068258.2:5 544 134	289	SINE (AluYc)	1
CP068258.2:9 684 360	118	LTR (LTR12C)	1
CP068258.2:16 901 268	325	SINE (AluYa5)	1
CP068258.2:16 945 493	343	SINE (AluY)	1
CP068258.2:30 503 819	38	Retroposon (SVA_C)	1
CP068258.2:30 946 834	128	LTR (LTR5A)	1
CP068258.2:31 430 118	813	LTR (PRIMA41-int)	1
CP068258.2:31 915 416	391	LINE (L1P1)	1
CP068258.2:33 846 866	46	Retroposon (SVA_F)	1
CP068258.2:37 925 585	290	SINE (AluSx)	1
CP068258.2:41 313 432	310	SINE (AluYb8)	1
CP068258.2:52 135 819	35	SINE (Alu)	1
CP068258.2:55 000 758	56	DNA (MER20)	1
CP068258.2:57 639 784	74	LINE (L1P1)	1
CP068258.2:62 091 491	125	SINE (AluSc)	1
CP068257.2:12 279 093	189	Retroposon (SVA_A)	1
CP068257.2:21 725 991	328	SINE (AluYk2)	1
CP068257.2:23 482 882	318	SINE (AluYk2)	1
CP068257.2:25 547 133	320	SINE (AluYa5)	1
CP068257.2:34 874 715	319	SINE (AluY)	1
CP068257.2:39 632 876	50	LTR (LTR7)	1
CP068257.2:42 828 950	135	SINE (AluSz)	1
CP068257.2:43 632 831	48	Retroposon (SVA_F)	1
CP068256.2:18 235 399	357	SINE (AluYb8)	1
CP068256.2:22 297 087	48	Retroposon (SVA_F)	1
CP068256.2:28 841 478	320	SINE (AluYa5)	1
CP068256.2:29 242 941	316	SINE (AluYa5)	1
CP068256.2:32 056 342	296	Retroposon (SVA_F)	1
CP068256.2:32 611 944	90	LTR (MER11C)	1
CP068256.2:43 299 732	313	SINE (AluYa5)	1
CP068256.2:50 173 743	150	LTR (LTR12C)	1
CP068255.2:295 086	164	SINE (AluSx)	1
CP068255.2:1 251 770	209	SINE (AluJb)	1
CP068255.2:24 293 358	128	Retroposon (SVA_F)	1
CP068255.2:25 517 581	333	SINE (AluYb8)	1
CP068255.2:45 336 671	220	LINE (L1M4b)	1
CP068255.2:45 336 912	541	LINE (L1M4a1)	1
CP068255.2:45 683 112	125	Retroposon (SVA_F)	1
CP068255.2:76 700 508	47	Retroposon (SVA_F)	1
CP068255.2:83 656 505	86	LINE (L1MC5)	1
CP068255.2:83 683 173	331	SINE (AluY)	1
CP068255.2:84 185 565	49	LINE (L1P1)	1
CP068255.2:86 915 067	296	SINE (AluYb8)	1
CP068255.2:88 182 066	136	SINE (AluY)	1
CP068255.2:90 623 038	134	SINE (AluSq)	1
CP068255.2:100 344 903	51	LINE (L1PB)	1
CP068255.2:136 580 331	50	LTR (LTR7)	1
CP068255.2:146 566 678	210	LINE (L1P2)	1
CP086569.2:306 952	164	SINE (AluSx)	1
CP086569.2:949 758	135	SINE (AluSq)	1
CP086569.2:1 096 397	125	Retroposon (SVA_F)	1

• 1 871 TE insertions were found with an AF ≥ 0.5.

A Manhattan plot of AFs is shown below.

Allele frequency is shown for insertions for each chromosome. Each dot marks a different insertion.

1.2.3 Genome distribution

1. Unique TE insertions occurences on the genome. B) Gene annotations of TE insertions on the genome. A single TE may be annotated more than once.

2 Analysis by TE class

This is the classification of TEs by class (I or II), family (e.g., SINE), subfamily (e.g., Alu) and name (e.g., AluY). SVA, Alu and L1 elements have their own table on the Class I section.

Repeat family	Repeat subfamily	Unique	Total (lax)	Total (strict)
DNA	hAT	3	6	5
	TcMar	2	3	3
LINE	CR1	1	2	2
	L1	88	174	173
	L2	3	6	6
LTR	ERV1	28	54	51
	ERVK	3	6	6
	ERVL	10	19	16
Retroposon	SVA	130	249	232
SINE	Alu	751	1 501	1 488
	MIR	1	2	1
Total	-	1 020	2 022	1 983

2.1 Class I Elements

2.1.1 Distribution

1. Unique class I TE insertions occurrences on the genome. B) Gene annotations of class I TE insertions on the genome. A single TE may be annotated more than once.

Detailed classification

Count of SVA elements by name

Name	Unique	Total (lax)	Total (strict)
SVA A	14	28	25
SVA B	3	6	6
SVA C	4	7	7
SVA D	6	11	11
SVA E	21	42	38
SVA F	81	153	143
SVA F1	1	2	2
Total	130	249	232

Click to show table with Alu counts by name.

Count of _Alu_ elements by name

Name	Unique	Total (lax)	Total (strict)
Alu	3	6	5
AluJb	15	30	28
AluJo	1	2	1
AluSc	3	6	6
AluSc8	4	8	8
AluSg	7	14	13
AluSg4	1	2	2
AluSp	2	4	4
AluSq	2	4	4
AluSx	32	64	60
AluSx3	3	6	5
AluSx4	3	6	5
AluSz	5	10	9
AluSz6	1	2	2
AluY	170	340	340
AluYa5	220	440	440
AluYa8	4	8	8
AluYb8	140	280	280
AluYb9	23	46	46
AluYc	15	30	30
AluYd8	3	6	5
AluYe5	23	46	46
AluYg6	19	38	38
AluYh7	3	6	6
AluYi6	3	6	6
AluYj4	2	4	4
AluYk11	1	2	2
AluYk12	2	4	4
AluYk2	33	66	66
AluYk3	2	4	4
AluYk4	2	4	4
FLAM C	2	4	4
FRAM	2	3	3
Total	751	1 501	1 488

Click to show table with L1 counts by name.

Count of L1 elements by name

Name	Unique	Total (lax)	Total (strict)
L1HS	42	84	84
L1M2	3	6	6
L1M3	2	4	4
L1M3b	1	2	2
L1M4	2	4	4
L1M5	1	2	2
L1MB2	1	2	2
L1MB8	1	2	2
L1MC	1	2	2
L1MC4	2	4	4
L1MC5	1	2	2
L1P1	5	10	9
L1P3	7	13	13
L1P3b	1	2	2
L1P4	1	1	1
L1P4a	1	2	2
L1PA10	1	2	2
L1PA11	1	2	2
L1PA12	1	2	2
L1PA13	1	2	2
L1PA16	2	4	4
L1PA2	2	4	4
L1PA3	1	2	2
L1PA7	2	4	4
L1PB	2	4	4
L1PB1	2	4	4
L1PREC2	1	2	2
Total	88	174	173

2.1.2 Class II TEs on gene sequences

Click to show table with 1015 rows.

Position	Length	Type	Gene	Annotation	Occurrences
CP068255.2:1 251 770	209	SINE (Alu)	ASMTL-AS1	Intron	2
CP068255.2:5 749 734	114	SINE (Alu)	NLGN4X	Intron	2
CP068255.2:18 657 080	53	SINE (Alu)	ADGRG2	Intron	2
CP068255.2:22 237 816	314	SINE (Alu)	PTCHD1-AS	Intron	2
CP068255.2:24 293 358	128	Retroposon (SVA)	POLA1	Intron	2
CP068255.2:28 925 984	49	Retroposon (SVA)	IL1RAPL1	Intron	2
CP068255.2:32 882 840	308	SINE (Alu)	DMD	Intron	2
CP068255.2:83 564 693	326	SINE (Alu)	SATL1	Intron	2
CP068255.2:83 656 505	86	LINE (L1)	SATL1	Intron	2
CP068255.2:83 683 173	331	SINE (Alu)	ZNF711	Intron	2
CP068255.2:84 713 986	311	SINE (Alu)	DACH2	Intron	2
CP068255.2:90 623 038	134	SINE (Alu)	PCDH11X	Intron	2
CP068255.2:95 509 280	319	SINE (Alu)	DIAPH2	Intron	2
CP068255.2:100 344 903	51	LINE (L1)	ZMAT1	Intron	2
CP068255.2:110 764 583	6 052	LINE (L1)	RTL4	Intron	2
CP068255.2:120 735 396	327	SINE (Alu)	LOC101928359	Intron	2
CP068255.2:135 342 456	346	SINE (Alu)	GPR101	Promoter	2
CP068255.2:146 257 439	448	Retroposon (SVA)	FMR1NB	Intron	2
CP068255.2:295 086	164	SINE (Alu)	LOC102724521	Intron	2
CP068256.2:7 583 739	315	SINE (Alu)	LOC128966699	Promoter	2
CP068256.2:18 235 399	357	SINE (Alu)	SLC25A18	Intron	2
CP068256.2:25 461 788	294	SINE (Alu)	KIAA1671	Intron	2
CP068256.2:27 234 737	2 641	Retroposon (SVA)	MIATNB	Intron	2
CP068256.2:28 841 478	320	SINE (Alu)	TTC28	Intron	2
CP068256.2:29 242 941	316	SINE (Alu)	CCDC117	Intron	2
CP068256.2:32 056 342	296	Retroposon (SVA)	SFI1	Intron	1
CP068256.2:32 276 540	315	SINE (Alu)	DEPDC5	Intron	2
CP068256.2:34 131 369	120	SINE (Alu)	LARGE1	Intron	2
CP068256.2:40 671 166	320	SINE (Alu)	TNRC6B	Intron	2
CP068256.2:41 793 756	312	SINE (Alu)	ZC3H7B	Intron	2
CP068256.2:43 028 173	130	SINE (Alu)	LOC124900479	Intron	1
CP068256.2:43 299 732	313	SINE (Alu)	ARFGAP3	Intron	2
CP068256.2:43 634 478	324	SINE (Alu)	TSPO	Intron	2
CP068256.2:44 411 840	1 148	LINE (L1)	PNPLA3	Intron	2
CP068256.2:45 651 198	124	SINE (Alu)	NUP50	Intron	2
CP068257.2:12 279 093	189	Retroposon (SVA)	LOC110091776	Promoter	2
CP068257.2:13 335 804	323	SINE (Alu)	NRIP1	Intron	2
CP068257.2:13 911 959	386	LINE (L1)	LOC105369302	Intron	2
CP068257.2:15 595 054	1 300	LINE (L1)	LOC107985511	Intron	2
CP068257.2:16 504 323	3 394	LINE (L1)	CHODL	Intron	2
CP068257.2:19 777 200	199	LTR (ERVL)	NCAM2	Intron	1
CP068257.2:21 725 991	328	SINE (Alu)	D21S2088E	Intron	2
CP068257.2:23 810 679	259	LINE (L1)	LOC105372753	Intron	2
CP068257.2:25 547 133	320	SINE (Alu)	LOC102724355	Intron	2
CP068257.2:34 874 715	319	SINE (Alu)	CLDN14-AS1	Intron	2
CP068257.2:36 014 613	321	SINE (Alu)	KCNJ6-AS1	Intron	2
CP068257.2:38 974 146	117	SINE (Alu)	DSCAM	Intron	2
CP068257.2:39 632 876	50	LTR (ERV1)	BACE2	Intron	2
CP068257.2:44 520 712	144	LTR (ERV1)	FTCD	Intron	2
CP068257.2:44 525 067	153	LTR (ERV1)	FTCD	Intron	1
CP068258.2:1 197 104	155	SINE (Alu)	PSMF1	Intron	1
CP068258.2:8 879 007	301	SINE (Alu)	PLCB1	Intron	2
CP068258.2:9 667 448	319	SINE (Alu)	LOC101929348	Intron	2
CP068258.2:9 684 360	118	LTR (ERV1)	PAK5	Intron	2
CP068258.2:9 703 216	287	SINE (Alu)	PAK5	Intron	2
CP068258.2:15 176 135	290	SINE (Alu)	MACROD2	Intron	2
CP068258.2:15 781 254	814	LINE (L1)	MACROD2	Intron	2
CP068258.2:21 237 843	1 435	LINE (L1)	KIZ	Intron	2
CP068258.2:25 627 225	446	Retroposon (SVA)	NINL	Intron	2
CP068258.2:33 194 638	125	Retroposon (SVA)	DEFB124	Intron	2
CP068258.2:35 932 030	321	SINE (Alu)	ASIP	Intron	2
CP068258.2:36 754 499	319	SINE (Alu)	TRPC4AP	Intron	2
CP068258.2:36 761 459	96	LTR (ERVL)	TRPC4AP	Intron	1
CP068258.2:36 874 438	215	Retroposon (SVA)	MMP24-AS1-EDEM2	Intron	2
CP068258.2:36 875 038	53	Retroposon (SVA)	MMP24-AS1-EDEM2	Intron	1
CP068258.2:37 925 585	290	SINE (Alu)	EPB41L1	Intron	2
CP068258.2:38 114 785	94	SINE (Alu)	DLGAP4	Intron	2
CP068258.2:38 911 585	312	SINE (Alu)	RPN2	Intron	2
CP068258.2:60 921 676	308	SINE (Alu)	ZNF831	Intron	2
CP068258.2:62 091 491	125	SINE (Alu)	MIR646HG	Intron	2
CP068258.2:63 187 711	319	SINE (Alu)	CDH4	Intron	2
CP068259.2:1 895 198	134	SINE (Alu)	SCAMP4	Intron	2
CP068259.2:1 997 543	308	SINE (Alu)	LOC107985278	Intron	2
CP068259.2:2 535 989	124	SINE (Alu)	GNG7	Intron	2
CP068259.2:3 262 720	318	SINE (Alu)	CELF5	Intron	2
CP068259.2:3 888 434	300	SINE (Alu)	ATCAY	Intron	2
CP068259.2:6 141 007	264	SINE (Alu)	ACSBG2	Intron	2
CP068259.2:6 151 665	290	SINE (Alu)	ACSBG2	Intron	2
CP068259.2:6 976 774	325	SINE (Alu)	ADGRE4P	Intron	2
CP068259.2:9 618 039	1 073	LTR (ERVL)	ZNF560	Intron	2
CP068259.2:10 463 384	309	SINE (Alu)	ICAM3	Intron	2
CP068259.2:17 856 391	165	SINE (Alu)	MAP1S	Intron	2
CP068259.2:18 265 763	319	SINE (Alu)	MAST3	Intron	2
CP068259.2:21 241 834	335	SINE (Alu)	ZNF714	Intron	2
CP068259.2:22 003 898	97	Retroposon (SVA)	LOC105372324	Intron	2
CP068259.2:22 772 644	312	SINE (Alu)	ZNF492	Promoter	2
CP068259.2:22 775 504	307	SINE (Alu)	ZNF492	Intron	2
CP068259.2:23 707 798	576	Retroposon (SVA)	LOC105372339	Intron	2
CP068259.2:31 895 943	960	LTR (ERVK)	VSTM2B-DT	Intron	2
CP068259.2:40 925 916	77	Retroposon (SVA)	SIPA1L3	Intron	2
CP068259.2:41 343 632	135	SINE (Alu)	RYR1	Intron	1
CP068259.2:44 182 455	292	SINE (Alu)	B9D2	Intron	1
CP068259.2:47 849 106	91	SINE (Alu)	RELB	Intron	2
CP068259.2:49 705 356	83	SINE (Alu)	ARHGAP35	Intron	2
CP068259.2:54 049 533	135	SINE (Alu)	LOC105372442	Intron	2
CP068259.2:54 361 759	311	SINE (Alu)	LINC01872	Intron	2
CP068259.2:56 273 788	202	SINE (Alu)	ZNF665	Promoter	2
CP068259.2:58 069 652	330	SINE (Alu)	NLRP2	Intron	2
CP068259.2:58 093 116	49	Retroposon (SVA)	NLRP2	Intron	1
CP068259.2:59 334 673	140	LTR (ERV1)	ZSCAN5A	Intron	1
CP068259.2:59 694 584	315	SINE (Alu)	ZNF71	Intron	2
CP068259.2:61 501 640	173	Retroposon (SVA)	ZNF584	Intron	2
CP068259.2:430 837	132	SINE (Alu)	CIMAP1D	Intron	2
CP068259.2:646 264	71	SINE (Alu)	PRSS57	Intron	2
CP068259.2:773 677	308	SINE (Alu)	PLPPR3	Intron	2
CP068260.2:3 032 121	146	SINE (Alu)	EMILIN2	Intron	2
CP068260.2:11 073 229	317	SINE (Alu)	PIEZO2	Intron	2
CP068260.2:13 014 200	326	SINE (Alu)	PTPN2	Intron	2
CP068260.2:27 152 079	317	SINE (Alu)	CHST9	Intron	2
CP068260.2:35 273 621	317	SINE (Alu)	MAPRE2	Intron	2
CP068260.2:50 011 949	174	Retroposon (SVA)	ACAA2	Intron	1
CP068260.2:53 663 279	319	SINE (Alu)	DCC	Intron	2
CP068260.2:56 003 038	320	SINE (Alu)	LOC105372130	Intron	2
CP068260.2:56 891 790	331	SINE (Alu)	WDR7	Intron	2
CP068260.2:57 914 127	142	SINE (Alu)	ATP8B1	Intron	2
CP068260.2:59 685 434	314	SINE (Alu)	CCBE1	Intron	2
CP068260.2:66 072 639	337	SINE (Alu)	CDH7	Intron	2
CP068260.2:69 709 407	314	SINE (Alu)	DOK6	Intron	2
CP068260.2:70 644 924	312	SINE (Alu)	RPS2P6	Promoter	2
CP068260.2:70 644 924	312	SINE (Alu)	LOC124908034	Intron	2
CP068260.2:71 698 063	53	LINE (L1)	LOC107985179	Intron	2
CP068260.2:73 827 616	319	SINE (Alu)	LOC105372190	Intron	2
CP068260.2:77 079 847	311	SINE (Alu)	ZNF236	Promoter	2
CP068260.2:77 079 847	311	SINE (Alu)	ZNF236	Intron	2
CP068260.2:77 259 157	173	Retroposon (SVA)	MBP	Intron	2
CP068261.2:1 101 211	320	SINE (Alu)	ABR	Intron	2
CP068261.2:2 705 744	84	SINE (Alu)	RAP1GAP2	Intron	2
CP068261.2:9 176 006	133	SINE (Alu)	STX8	Intron	2
CP068261.2:10 207 977	333	SINE (Alu)	LOC107985004	Intron	2
CP068261.2:11 562 452	331	SINE (Alu)	DNAH9	Intron	2
CP068261.2:13 709 042	286	SINE (Alu)	LOC100506974	Intron	2
CP068261.2:19 987 002	2 410	Retroposon (SVA)	SPECC1	Intron	2
CP068261.2:20 934 081	95	Retroposon (SVA)	LOC124900389	Intron	2
CP068261.2:32 278 209	348	LINE (L1)	NF1	Intron	2
CP068261.2:33 256 488	169	SINE (Alu)	RHBDL3	Intron	2
CP068261.2:33 264 228	184	SINE (Alu)	RHBDL3	Intron	2
CP068261.2:38 008 693	192	SINE (Alu)	AATF	Intron	2
CP068261.2:45 034 219	255	Retroposon (SVA)	ASB16-AS1	Intron	2
CP068261.2:49 291 096	324	SINE (Alu)	SKAP1	Intron	2
CP068261.2:52 198 654	330	SINE (Alu)	LINC02071	Intron	2
CP068261.2:58 722 101	310	SINE (Alu)	MRPS23	Intron	2
CP068261.2:58 788 526	320	SINE (Alu)	CUEDC1	Intron	2
CP068261.2:61 447 465	325	SINE (Alu)	LINC01999	Intron	2
CP068261.2:68 400 649	315	SINE (Alu)	PITPNC1	Intron	2
CP068261.2:68 426 011	300	SINE (Alu)	PITPNC1	Intron	2
CP068261.2:69 968 390	311	SINE (Alu)	ABCA6	Intron	2
CP068261.2:75 935 935	315	SINE (Alu)	KCTD2	Intron	2
CP068261.2:76 696 269	95	SINE (Alu)	UNK	Intron	2
CP068261.2:78 886 239	314	SINE (Alu)	TNRC6C	Intron	2
CP068261.2:81 014 286	314	SINE (Alu)	GAA	Intron	2
CP068261.2:82 055 352	321	SINE (Alu)	AATK	Intron	2
CP068261.2:82 527 911	321	SINE (Alu)	NPLOC4	Promoter	2
CP068261.2:82 527 911	321	SINE (Alu)	NPLOC4	Intron	2
CP068261.2:83 676 846	1 407	Retroposon (SVA)	TBCD	Intron	2
CP068261.2:455 384	97	Retroposon (SVA)	VPS53	Intron	2
CP068261.2:482 199	96	Retroposon (SVA)	VPS53	Intron	1
CP068261.2:718 177	310	SINE (Alu)	NXN	Intron	2
CP068262.2:5 324 686	318	SINE (Alu)	RBFOX1	Intron	2
CP068262.2:6 773 894	1 435	LINE (L1)	RBFOX1	Intron	2
CP068262.2:7 207 290	327	SINE (Alu)	RBFOX1	Intron	2
CP068262.2:11 372 260	247	Retroposon (SVA)	LOC105371082	Intron	1
CP068262.2:15 116 748	85	SINE (Alu)	PDXDC1	Intron	2
CP068262.2:19 426 191	321	SINE (Alu)	TMC5	Intron	2
CP068262.2:21 163 025	317	SINE (Alu)	LOC105371123	Intron	2
CP068262.2:63 015 018	316	SINE (Alu)	RSPRY1	Intron	2
CP068262.2:64 052 598	319	SINE (Alu)	CFAP263	Intron	2
CP068262.2:64 555 275	134	SINE (Alu)	LOC107984867	Intron	1
CP068262.2:64 559 334	55	SINE (Alu)	LOC107984867	Intron	2
CP068262.2:65 734 387	317	SINE (Alu)	LINC02141	Intron	2
CP068262.2:65 799 075	316	SINE (Alu)	LINC02141	Intron	2
CP068262.2:75 622 943	53	SINE (Alu)	WWP2	Intron	2
CP068262.2:83 862 431	133	SINE (Alu)	VAT1L	Intron	2
CP068262.2:85 213 072	327	SINE (Alu)	WWOX	Intron	2
CP068262.2:86 496 712	314	SINE (Alu)	DYNLRB2-AS1	Intron	2
CP068262.2:89 164 544	334	SINE (Alu)	CDH13	Intron	2
CP068262.2:95 928 542	313	SINE (Alu)	SPIRE2	Intron	2
CP068262.2:449 468	320	SINE (Alu)	RAB11FIP3	Intron	2
CP068262.2:480 325	310	SINE (Alu)	RAB11FIP3	Intron	2
CP068263.2:21 696 325	306	SINE (Alu)	LOC107984787	Intron	2
CP068263.2:25 263 076	323	SINE (Alu)	GABRG3	Intron	2
CP068263.2:25 673 162	392	LINE (L1)	OCA2	Intron	2
CP068263.2:30 617 379	312	SINE (Alu)	FMN1	Intron	2
CP068263.2:32 986 716	317	SINE (Alu)	DPH6	Intron	2
CP068263.2:33 461 746	125	Retroposon (SVA)	DPH6-DT	Intron	2
CP068263.2:33 609 416	310	SINE (Alu)	DPH6-DT	Intron	2
CP068263.2:35 220 952	667	LINE (L1)	LOC105370772	Intron	2
CP068263.2:36 282 515	335	SINE (Alu)	FAM98B	Intron	2
CP068263.2:39 531 742	326	SINE (Alu)	MGA	Intron	2
CP068263.2:49 413 307	333	SINE (Alu)	DMXL2	Intron	2
CP068263.2:50 969 692	329	SINE (Alu)	LOC107983981	Intron	2
CP068263.2:51 766 353	327	SINE (Alu)	UNC13C	Intron	2
CP068263.2:53 913 580	201	Retroposon (SVA)	LOC124903498	Intron	2
CP068263.2:56 106 612	320	SINE (Alu)	LOC124907518	Intron	2
CP068263.2:58 168 194	311	SINE (Alu)	ANXA2	Intron	2
CP068263.2:58 727 456	322	SINE (Alu)	RORA	Intron	2
CP068263.2:64 197 247	323	SINE (Alu)	TIPIN	Intron	2
CP068263.2:65 174 493	338	SINE (Alu)	IQCH	Intron	2
CP068263.2:66 514 204	300	SINE (Alu)	CORO2B	Intron	2
CP068263.2:71 508 181	322	SINE (Alu)	CD276	Intron	2
CP068263.2:73 374 856	143	Retroposon (SVA)	PTPN9	Intron	2
CP068263.2:75 994 840	163	SINE (Alu)	CIB2	Promoter	2
CP068263.2:76 507 733	319	SINE (Alu)	CHRNB4	Intron	2
CP068263.2:77 366 877	313	SINE (Alu)	LOC105370919	Promoter	2
CP068263.2:78 233 814	315	SINE (Alu)	ARNT2-DT	Intron	2
CP068263.2:82 606 621	317	SINE (Alu)	ALPK3	Intron	2
CP068263.2:82 652 649	68	SINE (Alu)	SLC28A1	Intron	1
CP068263.2:83 433 722	329	SINE (Alu)	AKAP13	Intron	2
CP068263.2:88 387 090	341	SINE (Alu)	CRTC3	Intron	2
CP068263.2:90 786 186	317	SINE (Alu)	CHD2	Intron	2
CP068263.2:92 039 791	304	SINE (Alu)	MCTP2	Intron	2
CP068263.2:98 667 707	309	SINE (Alu)	ALDH1A3	Intron	2
CP068264.2:13 913 770	332	SINE (Alu)	OR11H2	Promoter	2
CP068264.2:14 215 583	351	SINE (Alu)	OR4K14	Intron	2
CP068264.2:15 771 109	327	SINE (Alu)	OR10G3	Intron	2
CP068264.2:17 906 484	331	SINE (Alu)	LOC105370409	Intron	2
CP068264.2:18 207 639	2 019	LINE (L1)	DHRS4L2	Intron	2
CP068264.2:18 410 907	164	SINE (Alu)	CHMP4A	Intron	1
CP068264.2:24 909 873	330	SINE (Alu)	SCFD1	Intron	2
CP068264.2:38 244 019	307	SINE (Alu)	LINC02307	Intron	2
CP068264.2:49 534 324	310	SINE (Alu)	FBXO34	Intron	2
CP068264.2:65 176 813	327	SINE (Alu)	PCNX1	Intron	2
CP068264.2:72 724 910	330	SINE (Alu)	NRXN3	Intron	2
CP068264.2:74 707 834	339	SINE (Alu)	CEP128	Intron	2
CP068264.2:82 496 919	297	SINE (Alu)	KCNK10	Intron	2
CP068264.2:86 382 901	2 610	Retroposon (SVA)	CPSF2	Intron	2
CP068264.2:94 611 760	326	SINE (Alu)	WDR25	Intron	2
CP068264.2:95 760 108	331	SINE (Alu)	LOC105370673	Intron	2
CP068264.2:101 041 873	367	LTR (ERVL)	LOC124907431	Promoter	2
CP068265.2:5 252 040	70	LINE (L1)	LOC124907012	Intron	2
CP068265.2:18 043 969	324	SINE (Alu)	ANKRD20A9P	Intron	2
CP068265.2:20 642 553	146	Retroposon (SVA)	ZDHHC20	Intron	2
CP068265.2:20 642 723	76	Retroposon (SVA)	ZDHHC20	Intron	2
CP068265.2:23 253 427	340	SINE (Alu)	SPATA13	Intron	2
CP068265.2:24 146 112	322	SINE (Alu)	TPTE2P1	Intron	2
CP068265.2:25 092 355	142	LTR (ERV1)	ATP8A2	Intron	2
CP068265.2:28 214 233	67	LTR (ERV1)	MTUS2	Intron	2
CP068265.2:28 541 097	308	SINE (Alu)	MTUS2	Intron	2
CP068265.2:28 603 950	322	SINE (Alu)	MTUS2	Intron	2
CP068265.2:33 759 335	76	Retroposon (SVA)	LINC02343	Intron	2
CP068265.2:38 095 120	315	SINE (Alu)	FREM2	Intron	2
CP068265.2:42 185 733	1 662	Retroposon (SVA)	EPSTI1	Intron	2
CP068265.2:44 598 905	656	LTR (ERV1)	TPT1-AS1	Intron	1
CP068265.2:45 294 975	309	SINE (Alu)	CPB2-AS1	Intron	2
CP068265.2:45 366 989	317	SINE (Alu)	LCP1	Intron	2
CP068265.2:48 723 119	77	Retroposon (SVA)	SETDB2-PHF11	Intron	2
CP068265.2:49 558 566	286	SINE (Alu)	DLEU1	Intron	2
CP068265.2:77 302 799	314	SINE (Alu)	OBI1-AS1	Intron	2
CP068265.2:77 410 850	327	SINE (Alu)	OBI1-AS1	Intron	2
CP068265.2:78 735 172	314	SINE (Alu)	NDFIP2	Intron	2
CP068265.2:84 144 201	221	SINE (Alu)	LOC105370290	Intron	2
CP068265.2:91 376 118	321	SINE (Alu)	GPC5	Intron	2
CP068265.2:91 791 178	320	SINE (Alu)	GPC5	Intron	2
CP068265.2:91 814 846	235	SINE (Alu)	GPC5	Intron	2
CP068265.2:93 800 756	143	SINE (Alu)	TGDS	Promoter	2
CP068265.2:98 181 350	134	SINE (Alu)	DOCK9	Intron	2
CP068265.2:100 098 881	315	SINE (Alu)	NALCN-AS1	Intron	2
CP068265.2:100 191 892	100	LTR (ERV1)	NALCN-AS1	Intron	1
CP068265.2:106 009 693	127	LINE (L1)	LOC105370349	Intron	1
CP068265.2:107 842 849	60	LINE (L1)	MYO16	Intron	2
CP068265.2:109 388 985	313	SINE (Alu)	COL4A1	Intron	2
CP068265.2:109 862 682	127	LTR (ERV1)	NAXD	Intron	2
CP068265.2:109 904 832	325	SINE (Alu)	CARS2	Intron	2
CP068265.2:110 189 654	247	SINE (Alu)	LOC105370364	Intron	2
CP068265.2:111 926 533	80	Retroposon (SVA)	ATP11AUN	Intron	2
CP068265.2:112 115 809	313	SINE (Alu)	ATP11A	Intron	2
CP068265.2:113 172 324	316	SINE (Alu)	C13orf46	Intron	2
CP068266.2:1 222 653	76	LINE (L1)	ERC1	Intron	2
CP068266.2:4 668 545	310	SINE (Alu)	NDUFA9	Intron	2
CP068266.2:5 668 025	298	SINE (Alu)	ANO2	Intron	2
CP068266.2:6 807 792	255	SINE (Alu)	CD4	Intron	2
CP068266.2:8 456 750	321	SINE (Alu)	CLEC6A	Intron	2
CP068266.2:10 533 754	171	LTR (ERV1)	STYK1	Intron	2
CP068266.2:10 681 320	287	SINE (Alu)	TAS2R8	Promoter	2
CP068266.2:10 960 223	334	SINE (Alu)	PRH1-PRR4	Intron	2
CP068266.2:10 975 580	313	SINE (Alu)	PRH1-PRR4	Intron	2
CP068266.2:12 283 010	97	Retroposon (SVA)	BORCS5	Intron	2
CP068266.2:12 654 312	1 779	LINE (L1)	APOLD1	Intron	2
CP068266.2:20 199 299	320	SINE (Alu)	LOC105369688	Intron	2
CP068266.2:20 732 559	319	SINE (Alu)	SLCO1B3	Intron	2
CP068266.2:21 811 737	332	SINE (Alu)	ABCC9	Intron	2
CP068266.2:24 169 786	315	SINE (Alu)	SOX5	Intron	2
CP068266.2:24 236 442	322	SINE (Alu)	SOX5	Intron	2
CP068266.2:25 390 110	469	LINE (L1)	LMNTD1	Intron	2
CP068266.2:26 657 340	156	Retroposon (SVA)	ITPR2	Intron	2
CP068266.2:26 657 758	146	Retroposon (SVA)	ITPR2	Intron	2
CP068266.2:27 153 024	326	SINE (Alu)	STK38L	Intron	2
CP068266.2:27 583 597	314	SINE (Alu)	MRPS35	Intron	2
CP068266.2:27 945 245	6 056	LINE (L1)	LOC105369710	Intron	2
CP068266.2:28 158 038	314	SINE (Alu)	CCDC91	Intron	2
CP068266.2:29 543 251	312	SINE (Alu)	TMTC1	Intron	2
CP068266.2:30 189 897	307	SINE (Alu)	LOC105369718	Intron	2
CP068266.2:32 081 943	332	SINE (Alu)	BICD1	Intron	2
CP068266.2:32 146 334	317	SINE (Alu)	BICD1	Intron	2
CP068266.2:40 391 171	305	SINE (Alu)	MUC19	Intron	2
CP068266.2:41 225 228	311	SINE (Alu)	PDZRN4	Intron	2
CP068266.2:41 239 964	344	LINE (L1)	PDZRN4	Intron	2
CP068266.2:50 567 396	3 142	Retroposon (SVA)	DIP2B	Intron	2
CP068266.2:50 739 488	307	SINE (Alu)	ATF1	Intron	2
CP068266.2:53 648 539	314	SINE (Alu)	ATP5MC2	Promoter	2
CP068266.2:56 751 564	48	Retroposon (SVA)	HSD17B6	Intron	1
CP068266.2:64 182 833	84	LINE (L1)	KICS2	Intron	2
CP068266.2:64 720 062	177	SINE (Alu)	GNS	Intron	2
CP068266.2:66 597 279	329	SINE (Alu)	GRIP1	Intron	2
CP068266.2:69 562 698	343	SINE (Alu)	MIR3913-2	Promoter	2
CP068266.2:71 111 190	320	SINE (Alu)	TSPAN8	Intron	2
CP068266.2:77 981 522	327	SINE (Alu)	NAV3	Intron	2
CP068266.2:84 069 393	314	SINE (Alu)	LOC107984536	Intron	2
CP068266.2:94 256 702	319	SINE (Alu)	PLXNC1	Intron	2
CP068266.2:95 818 964	2 729	Retroposon (SVA)	SNRPF-DT	Intron	2
CP068266.2:101 445 294	2 736	Retroposon (SVA)	SPIC	Intron	2
CP068266.2:101 881 504	101	SINE (Alu)	DRAM1	Intron	2
CP068266.2:103 861 548	325	SINE (Alu)	TTC41P	Intron	2
CP068266.2:104 285 275	95	Retroposon (SVA)	TXNRD1	Intron	1
CP068266.2:104 884 820	186	SINE (Alu)	SLC41A2	Intron	2
CP068266.2:105 341 485	313	SINE (Alu)	LOC105369957	Intron	2
CP068266.2:116 714 500	170	SINE (Alu)	SPRING1	Intron	2
CP068266.2:117 736 378	3 759	LINE (L1)	KSR2	Intron	2
CP068266.2:121 990 178	439	Retroposon (SVA)	CFAP251	Intron	2
CP068266.2:122 233 522	78	SINE (Alu)	VPS33A	Intron	2
CP068266.2:122 521 590	324	SINE (Alu)	KNTC1	Promoter	2
CP068266.2:122 521 590	324	SINE (Alu)	RSRC2	Intron	2
CP068266.2:124 855 294	308	SINE (Alu)	SCARB1	Intron	2
CP068266.2:126 414 081	330	SINE (Alu)	LINC02825	Intron	2
CP068266.2:126 429 324	326	SINE (Alu)	LINC02825	Intron	2
CP068266.2:126 723 341	318	SINE (Alu)	LINC02824	Intron	2
CP068266.2:127 938 348	319	SINE (Alu)	LINC00508	Intron	2
CP068266.2:132 986 417	124	SINE (Alu)	ZNF605	Intron	2
CP068266.2:132 990 676	259	LTR (ERV1)	ZNF605	Intron	1
CP068266.2:943 694	322	SINE (Alu)	RAD52	Intron	2
CP068267.2:2 838 941	123	SINE (Alu)	KCNQ1	Intron	2
CP068267.2:4 795 490	332	SINE (Alu)	MMP26	Intron	2
CP068267.2:4 952 227	232	SINE (Alu)	MMP26	Intron	2
CP068267.2:5 010 999	301	SINE (Alu)	MMP26	Intron	2
CP068267.2:7 389 915	328	SINE (Alu)	SYT9	Intron	2
CP068267.2:7 466 060	322	SINE (Alu)	SYT9	Intron	2
CP068267.2:7 649 825	321	SINE (Alu)	LOC105376535	Promoter	2
CP068267.2:7 649 825	321	SINE (Alu)	PPFIBP2	Intron	2
CP068267.2:8 949 899	319	SINE (Alu)	DENND2B	Intron	2
CP068267.2:9 857 725	325	SINE (Alu)	SBF2-AS1	Intron	2
CP068267.2:14 422 370	315	SINE (Alu)	RRAS2	Intron	2
CP068267.2:16 096 394	322	SINE (Alu)	SOX6	Intron	2
CP068267.2:17 004 792	124	Retroposon (SVA)	PLEKHA7	Intron	2
CP068267.2:17 004 795	253	Retroposon (SVA)	PLEKHA7	Intron	2
CP068267.2:17 272 181	312	SINE (Alu)	PIK3C2A	Intron	2
CP068267.2:22 361 771	123	LINE (L1)	ANO5	Intron	2
CP068267.2:22 364 248	1 119	LINE (L1)	ANO5	Intron	1
CP068267.2:25 682 675	343	SINE (Alu)	LINC02699	Intron	2
CP068267.2:26 412 603	299	SINE (Alu)	ANO3	Intron	2
CP068267.2:27 776 457	330	LTR (ERV1)	BDNF-AS	Intron	2
CP068267.2:31 266 976	315	SINE (Alu)	DCDC1	Intron	2
CP068267.2:33 652 002	321	SINE (Alu)	KIAA1549L	Intron	2
CP068267.2:33 790 935	317	SINE (Alu)	KIAA1549L	Intron	2
CP068267.2:34 364 873	324	SINE (Alu)	ABTB2	Intron	2
CP068267.2:36 284 959	76	Retroposon (SVA)	LDLRAD3	Intron	2
CP068267.2:41 292 029	312	LTR (ERV1)	LRRC4C	Intron	2
CP068267.2:47 253 984	174	Retroposon (SVA)	CSTPP1	Intron	2
CP068267.2:47 950 030	291	SINE (Alu)	NUP160	Intron	2
CP068267.2:49 811 499	300	SINE (Alu)	GRM5P1	Intron	2
CP068267.2:58 991 318	330	SINE (Alu)	LOC283194	Intron	2
CP068267.2:60 485 034	78	LINE (L1)	MS4A13	Intron	2
CP068267.2:63 882 702	258	LINE (L1)	MARK2	Intron	2
CP068267.2:74 199 847	262	SINE (Alu)	P4HA3	Intron	2
CP068267.2:75 339 541	77	Retroposon (SVA)	RPS3	Intron	2
CP068267.2:77 212 142	313	SINE (Alu)	GDPD4	Intron	2
CP068267.2:78 812 746	73	Retroposon (SVA)	TENM4	Intron	2
CP068267.2:79 061 406	55	LTR (ERVL)	TENM4	Intron	2
CP068267.2:89 743 813	56	LINE (L1)	LOC642414	Intron	1
CP068267.2:96 295 863	337	SINE (Alu)	MAML2	Intron	2
CP068267.2:96 505 971	317	SINE (Alu)	JRKL-AS1	Intron	2
CP068267.2:99 867 914	326	SINE (Alu)	CNTN5	Intron	2
CP068267.2:101 555 768	326	SINE (Alu)	TRPC6	Intron	2
CP068267.2:102 479 727	220	SINE (Alu)	LOC124902740	Intron	2
CP068267.2:104 919 973	321	SINE (Alu)	CASP4LP	Intron	2
CP068267.2:106 732 179	292	SINE (Alu)	GUCY1A2	Intron	2
CP068267.2:110 116 231	329	SINE (Alu)	ZC3H12C	Intron	2
CP068267.2:114 530 381	71	SINE (Alu)	NXPE2	Intron	2
CP068267.2:118 715 549	133	SINE (Alu)	LOC105369519	Intron	2
CP068267.2:130 127 233	449	Retroposon (SVA)	APLP2	Intron	1
CP068267.2:130 214 060	127	LTR (ERVL)	ST14	Intron	2
CP068267.2:473 330	320	SINE (Alu)	ANO9	Intron	2
CP068268.2:3 530 702	314	SINE (Alu)	LOC105376360	Intron	2
CP068268.2:4 863 983	71	LINE (L1)	AKR1E2	Intron	2
CP068268.2:6 056 097	479	Retroposon (SVA)	IL2RA	Intron	2
CP068268.2:6 229 202	313	SINE (Alu)	PFKFB3	Intron	2
CP068268.2:9 873 493	325	SINE (Alu)	LINC02663	Intron	2
CP068268.2:10 462 177	321	SINE (Alu)	CELF2-DT	Intron	2
CP068268.2:10 778 281	170	SINE (Alu)	CELF2	Intron	2
CP068268.2:11 954 252	322	SINE (Alu)	UPF2	Intron	2
CP068268.2:14 722 876	64	LINE (L1)	FAM107B	Intron	2
CP068268.2:25 217 221	334	SINE (Alu)	GPR158	Intron	2
CP068268.2:25 961 851	320	SINE (Alu)	MYO3A	Intron	2
CP068268.2:26 090 720	316	SINE (Alu)	MYO3A	Intron	2
CP068268.2:26 503 688	303	SINE (Alu)	APBB1IP	Intron	2
CP068268.2:27 326 370	448	Retroposon (SVA)	ODAD2P1	Intron	2
CP068268.2:29 454 890	569	LINE (L1)	SVIL-AS1	Intron	2
CP068268.2:29 760 714	173	SINE (Alu)	SVIL	Intron	2
CP068268.2:30 638 183	125	SINE (Alu)	LYZL2	Intron	2
CP068268.2:34 285 274	315	SINE (Alu)	PARD3	Intron	2
CP068268.2:37 665 828	300	SINE (Alu)	LOC102724533	Intron	2
CP068268.2:43 632 105	324	SINE (Alu)	LOC105378269	Promoter	2
CP068268.2:47 533 855	322	SINE (Alu)	SHLD2P1	Intron	2
CP068268.2:49 919 167	314	SINE (Alu)	VSTM4	Intron	2
CP068268.2:53 450 889	81	LTR (ERVL)	LOC105378305	Intron	2
CP068268.2:55 607 393	312	SINE (Alu)	PCDH15	Intron	2
CP068268.2:59 611 491	317	SINE (Alu)	BICC1	Intron	2
CP068268.2:60 550 872	127	Retroposon (SVA)	SLC16A9	Intron	2
CP068268.2:62 840 679	169	SINE (Alu)	ARID5B	Intron	2
CP068268.2:66 534 377	326	SINE (Alu)	LINC01515	Intron	2
CP068268.2:67 440 301	327	SINE (Alu)	CTNNA3	Intron	2
CP068268.2:69 393 576	314	SINE (Alu)	SLC25A16	Intron	2
CP068268.2:70 106 721	316	SINE (Alu)	HKDC1	Intron	2
CP068268.2:71 715 465	316	SINE (Alu)	SGPL1	Intron	2
CP068268.2:72 303 748	327	SINE (Alu)	CDH23	Intron	2
CP068268.2:76 207 675	48	Retroposon (SVA)	ZNF503-AS1	Intron	2
CP068268.2:85 102 012	321	SINE (Alu)	LRIT2	Intron	2
CP068268.2:86 896 322	309	SINE (Alu)	GRID1	Intron	2
CP068268.2:87 790 483	326	SINE (Alu)	BMPR1A	Intron	2
CP068268.2:88 939 111	319	SINE (Alu)	LOC105378414	Intron	2
CP068268.2:91 338 874	313	SINE (Alu)	LINC02653	Intron	2
CP068268.2:91 351 314	317	SINE (Alu)	LINC02653	Intron	2
CP068268.2:95 704 117	395	LINE (L1)	CYP2C19	Intron	2
CP068268.2:96 787 855	315	SINE (Alu)	CC2D2B	Intron	2
CP068268.2:99 145 741	328	SINE (Alu)	LOXL4	Intron	2
CP068268.2:99 427 122	153	SINE (Alu)	HPSE2	Intron	2
CP068268.2:100 722 705	223	Retroposon (SVA)	ABCC2	Intron	2
CP068268.2:102 771 351	303	SINE (Alu)	ARMH3	Intron	2
CP068268.2:102 861 010	322	SINE (Alu)	ARMH3	Intron	2
CP068268.2:102 921 216	141	Retroposon (SVA)	ARMH3	Intron	2
CP068268.2:104 225 372	312	SINE (Alu)	PCGF6	Intron	2
CP068268.2:105 985 932	312	SINE (Alu)	SORCS3	Intron	2
CP068268.2:107 018 348	141	SINE (Alu)	LOC105378469	Intron	2
CP068268.2:111 134 875	308	SINE (Alu)	MXI1	Intron	2
CP068268.2:113 205 090	311	SINE (Alu)	GUCY2GP	Intron	2
CP068268.2:116 140 819	319	SINE (Alu)	ATRNL1	Intron	2
CP068268.2:119 905 013	320	SINE (Alu)	LINC03036	Intron	2
CP068268.2:121 742 443	62	LTR (ERV1)	WDR11-DT	Intron	2
CP068268.2:123 679 345	333	SINE (Alu)	LOC124900290	Intron	2
CP068268.2:128 286 207	314	SINE (Alu)	DOCK1	Intron	2
CP068268.2:131 025 575	97	LINE (L1)	C10orf143	Intron	2
CP068269.2:6 295 538	711	LINE (L1)	LOC107987046	Intron	2
CP068269.2:6 885 377	312	SINE (Alu)	KDM4C	Intron	2
CP068269.2:9 145 491	320	SINE (Alu)	PTPRD	Intron	2
CP068269.2:10 470 785	314	SINE (Alu)	PTPRD	Intron	2
CP068269.2:14 642 209	105	LINE (L1)	ZDHHC21	Intron	2
CP068269.2:19 378 518	95	SINE (Alu)	DENND4C	Intron	2
CP068269.2:28 208 722	312	SINE (Alu)	LINGO2	Intron	2
CP068269.2:32 330 851	226	SINE (Alu)	LOC107987059	Intron	2
CP068269.2:35 038 160	63	LINE (L1)	LOC105376025	Intron	2
CP068269.2:36 668 044	309	SINE (Alu)	MELK	Intron	2
CP068269.2:37 214 016	317	SINE (Alu)	ZCCHC7	Intron	2
CP068269.2:81 331 129	317	SINE (Alu)	TJP2	Intron	2
CP068269.2:82 950 586	315	SINE (Alu)	TRPM3	Intron	2
CP068269.2:82 997 613	313	SINE (Alu)	TRPM3	Intron	2
CP068269.2:83 123 285	132	SINE (Alu)	TRPM3	Intron	2
CP068269.2:84 767 523	313	SINE (Alu)	TMC1	Intron	2
CP068269.2:84 951 633	333	SINE (Alu)	TMC1	Intron	2
CP068269.2:84 957 291	97	Retroposon (SVA)	TMC1	Intron	2
CP068269.2:88 222 516	455	Retroposon (SVA)	PCSK5	Intron	2
CP068269.2:97 437 226	307	SINE (Alu)	LOC105376119	Intron	2
CP068269.2:99 911 985	299	Retroposon (SVA)	LOC124902198	Intron	2
CP068269.2:102 597 254	306	SINE (Alu)	LINC01508	Intron	2
CP068269.2:104 997 505	135	Retroposon (SVA)	ANKRD19P	Intron	1
CP068269.2:106 136 047	250	SINE (Alu)	LOC124902216	Intron	2
CP068269.2:106 667 387	318	SINE (Alu)	LOC107987100	Intron	2
CP068269.2:112 443 781	81	SINE (Alu)	INVS	Intron	2
CP068269.2:117 159 335	727	Retroposon (SVA)	CT70	Intron	2
CP068269.2:122 734 404	330	SINE (Alu)	SVEP1	Intron	2
CP068269.2:124 311 519	315	SINE (Alu)	SUSD1	Intron	2
CP068269.2:124 686 226	173	Retroposon (SVA)	KIAA1958	Intron	1
CP068269.2:129 033 833	203	Retroposon (SVA)	LOC105376239	Intron	2
CP068269.2:141 137 397	133	SINE (Alu)	PHYHD1	Intron	2
CP068269.2:144 740 730	2 980	LINE (L1)	CFAP77	Intron	2
CP068269.2:146 110 857	225	Retroposon (SVA)	VAV2	Intron	2
CP068270.2:3 524 026	328	SINE (Alu)	CSMD1	Intron	2
CP068270.2:4 117 692	328	SINE (Alu)	CSMD1	Intron	2
CP068270.2:4 348 133	94	LINE (L1)	CSMD1	Intron	2
CP068270.2:5 725 123	602	LINE (L1)	LOC105377795	Intron	2
CP068270.2:10 137 743	312	SINE (Alu)	TNKS	Intron	2
CP068270.2:10 681 511	321	SINE (Alu)	ERI1	Intron	2
CP068270.2:14 383 880	321	SINE (Alu)	SGCZ	Intron	2
CP068270.2:15 957 256	323	SINE (Alu)	TUSC3	Intron	2
CP068270.2:17 675 688	328	SINE (Alu)	MTMR7	Intron	2
CP068270.2:28 963 145	129	LINE (L1)	EXTL3	Promoter	2
CP068270.2:28 963 145	129	LINE (L1)	EXTL3	Intron	2
CP068270.2:32 796 257	197	LINE (L1)	NRG1	Intron	2
CP068270.2:34 175 409	284	SINE (Alu)	LOC105379364	Intron	2
CP068270.2:39 283 681	313	SINE (Alu)	ADAM9	Intron	2
CP068270.2:42 456 695	309	SINE (Alu)	PLAT	Intron	2
CP068270.2:48 487 704	322	SINE (Alu)	LOC107986941	Intron	2
CP068270.2:52 201 376	318	SINE (Alu)	PCMTD1	Intron	2
CP068270.2:54 436 680	313	SINE (Alu)	LYPLA1-TCEA1	Intron	2
CP068270.2:55 866 231	315	SINE (Alu)	XKR4	Intron	2
CP068270.2:60 716 533	315	SINE (Alu)	LOC105375864	Intron	2
CP068270.2:61 037 962	321	SINE (Alu)	RAB2A	Intron	2
CP068270.2:62 855 980	322	SINE (Alu)	NKAIN3	Intron	2
CP068270.2:66 088 341	73	Retroposon (SVA)	MTFR1	Intron	2
CP068270.2:66 658 372	174	Retroposon (SVA)	LOC102724687	Intron	2
CP068270.2:74 052 032	168	SINE (Alu)	STAU2	Intron	2
CP068270.2:74 150 241	341	SINE (Alu)	STAU2	Intron	2
CP068270.2:80 270 047	319	SINE (Alu)	LOC101927040	Intron	2
CP068270.2:87 184 808	320	SINE (Alu)	PSKH2	Intron	2
CP068270.2:96 503 803	232	SINE (Alu)	CFAP418-AS1	Intron	1
CP068270.2:96 770 262	325	SINE (Alu)	CFAP418-AS1	Intron	2
CP068270.2:99 578 329	325	SINE (Alu)	STK3	Intron	2
CP068270.2:102 509	314	SINE (Alu)	LOC124902052	Intron	2
CP068270.2:104 056 682	244	Retroposon (SVA)	MAILR	Intron	2
CP068270.2:106 786 176	317	SINE (Alu)	ZFPM2	Intron	2
CP068270.2:107 627 313	325	SINE (Alu)	OXR1	Intron	2
CP068270.2:107 844 447	325	SINE (Alu)	OXR1	Intron	2
CP068270.2:110 217 896	320	SINE (Alu)	TRHR	Intron	2
CP068270.2:110 465 612	299	SINE (Alu)	ENY2	Intron	2
CP068270.2:117 806 203	719	Retroposon (SVA)	EIF3H	Intron	2
CP068270.2:119 563 257	310	SINE (Alu)	SAMD12	Intron	2
CP068270.2:120 917 422	232	SINE (Alu)	TAF2	Intron	2
CP068270.2:121 797 875	317	SINE (Alu)	SNTB1	Intron	2
CP068270.2:122 849 197	321	SINE (Alu)	LOC124906789	Intron	2
CP068270.2:126 458 371	317	SINE (Alu)	NSMCE2	Intron	2
CP068270.2:126 461 172	353	SINE (Alu)	NSMCE2	Intron	2
CP068270.2:132 253 249	316	SINE (Alu)	LOC105375760	Intron	1
CP068270.2:132 282 389	312	SINE (Alu)	LOC105375760	Intron	2
CP068270.2:133 053 370	323	SINE (Alu)	EFR3A	Intron	2
CP068270.2:135 985 556	112	LINE (CR1)	LOC101927845	Intron	2
CP068270.2:137 820 678	330	SINE (Alu)	LINC02055	Intron	2
CP068271.2:2 382 169	77	Retroposon (SVA)	SNX8	Intron	2
CP068271.2:2 537 743	337	SINE (Alu)	CHST12	Intron	2
CP068271.2:2 674 652	107	SINE (Alu)	IQCE	Intron	2
CP068271.2:6 790 042	96	Retroposon (SVA)	LOC124901583	Intron	2
CP068271.2:8 616 432	317	SINE (Alu)	NXPH1	Intron	2
CP068271.2:15 262 062	60	LTR (ERV1)	AGMO	Intron	2
CP068271.2:18 412 782	280	SINE (Alu)	HDAC9	Intron	2
CP068271.2:20 330 965	326	SINE (Alu)	MACC1	Intron	2
CP068271.2:23 765 393	312	SINE (Alu)	CCDC126	Intron	2
CP068271.2:23 776 953	125	Retroposon (SVA)	CCDC126	Intron	2
CP068271.2:26 303 990	118	LINE (L1)	NFE2L3	Intron	2
CP068271.2:27 880 171	336	SINE (Alu)	TAX1BP1	Intron	2
CP068271.2:33 334 398	1 407	LINE (L1)	BBS9	Intron	2
CP068271.2:42 668 469	321	SINE (Alu)	LOC105375250	Promoter	2
CP068271.2:43 532 806	252	SINE (Alu)	HECW1	Intron	2
CP068271.2:45 911 340	323	SINE (Alu)	SEPTIN7P2	Intron	2
CP068271.2:48 018 072	323	SINE (Alu)	PKD1L1	Intron	2
CP068271.2:56 180 856	324	SINE (Alu)	PSPH	Intron	2
CP068271.2:56 181 463	61	SINE (Alu)	PSPH	Intron	1
CP068271.2:75 037 348	270	Retroposon (SVA)	METTL27	Intron	1
CP068271.2:76 011 796	192	SINE (Alu)	GTF2IRD2	Intron	2
CP068271.2:77 895 813	299	SINE (Alu)	LINC03009	Intron	2
CP068271.2:79 582 547	322	SINE (Alu)	MAGI2	Intron	2
CP068271.2:82 045 199	330	SINE (Alu)	SEMA3C	Intron	2
CP068271.2:83 623 827	326	SINE (Alu)	CACNA2D1	Intron	2
CP068271.2:84 052 406	314	SINE (Alu)	PCLO	Intron	2
CP068271.2:85 626 331	317	SINE (Alu)	SEMA3A	Intron	2
CP068271.2:90 466 173	340	SINE (Alu)	ZNF804B	Intron	2
CP068271.2:91 992 920	206	Retroposon (SVA)	CDK14	Intron	2
CP068271.2:96 385 565	327	SINE (Alu)	PPP1R9A	Intron	2
CP068271.2:100 478 927	331	SINE (Alu)	MYH16	Intron	2
CP068271.2:102 681 693	2 780	Retroposon (SVA)	COL26A1	Intron	2
CP068271.2:103 867 427	84	SINE (Alu)	POLR2J3-UPK3BL2	Intron	2
CP068271.2:104 162 973	331	SINE (Alu)	FAM185A	Intron	2
CP068271.2:106 264 512	103	SINE (Alu)	LOC101927902	Intron	2
CP068271.2:106 569 809	323	SINE (Alu)	SRPK2	Intron	2
CP068271.2:109 361 785	120	SINE (Alu)	LAMB4	Intron	2
CP068271.2:112 163 030	96	LINE (L1)	IMMP2L	Intron	2
CP068271.2:115 628 405	311	SINE (Alu)	FOXP2	Intron	2
CP068271.2:118 437 551	269	SINE (Alu)	ST7	Intron	2
CP068271.2:119 031 590	319	SINE (Alu)	LOC105375469	Intron	2
CP068271.2:119 758 768	316	SINE (Alu)	LOC105375471	Intron	2
CP068271.2:124 871 255	308	SINE (Alu)	NDUFA5	Intron	2
CP068271.2:127 551 027	333	SINE (Alu)	LOC105375488	Promoter	2
CP068271.2:127 551 027	333	SINE (Alu)	LOC105375488	Intron	2
CP068271.2:132 541 792	144	SINE (Alu)	MKLN1	Intron	2
CP068271.2:133 487 650	328	SINE (Alu)	PLXNA4	Intron	2
CP068271.2:135 973 338	419	LINE (L1)	BPGM	Intron	2
CP068271.2:136 047 537	322	SINE (Alu)	LOC124901750	Intron	2
CP068271.2:136 812 007	329	SINE (Alu)	CNOT4	Intron	2
CP068271.2:138 459 440	311	SINE (Alu)	LOC349160	Intron	2
CP068271.2:141 676 142	216	Retroposon (SVA)	SLC37A3	Intron	1
CP068271.2:141 951 322	316	SINE (Alu)	DENND2A	Intron	2
CP068271.2:142 627 896	318	SINE (Alu)	TMEM178B	Intron	2
CP068271.2:145 832 167	61	LTR (ERV1)	TPK1	Intron	2
CP068271.2:145 866 395	139	LINE (L1)	TPK1	Promoter	2
CP068271.2:145 866 395	139	LINE (L1)	TPK1	Intron	2
CP068271.2:149 591 887	134	SINE (Alu)	CNTNAP2	Intron	2
CP068271.2:149 923 445	134	SINE (Alu)	CUL1	Intron	2
CP068271.2:151 116 815	318	SINE (Alu)	ACTR3C	Intron	2
CP068271.2:151 376 999	50	Retroposon (SVA)	ACTR3C	Intron	2
CP068271.2:151 854 516	89	SINE (Alu)	LOC124901774	Intron	2
CP068271.2:152 200 515	52	LTR (ERVK)	ATG9B	Intron	2
CP068271.2:152 533 889	143	SINE (Alu)	NUB1	Intron	2
CP068271.2:155 444 348	311	SINE (Alu)	DPP6	Intron	2
CP068271.2:155 766 178	328	SINE (Alu)	DPP6	Intron	2
CP068271.2:160 034 958	126	SINE (Alu)	ESYT2	Intron	2
CP068272.2:2 841 255	303	SINE (Alu)	SERPINB6	Promoter	2
CP068272.2:5 217 730	320	SINE (Alu)	FARS2	Intron	2
CP068272.2:7 310 938	81	LTR (ERV1)	LOC102724234	Intron	2
CP068272.2:9 939 215	312	SINE (Alu)	OFCC1	Intron	2
CP068272.2:10 902 109	135	SINE (Alu)	ELOVL2	Intron	2
CP068272.2:13 394 505	329	SINE (Alu)	RPS4XP7	Promoter	2
CP068272.2:19 027 502	323	SINE (Alu)	LOC101928519	Intron	2
CP068272.2:20 041 064	314	SINE (Alu)	MBOAT1	Intron	2
CP068272.2:28 879 239	100	SINE (Alu)	ZNF311	Intron	2
CP068272.2:30 680 491	159	LTR (ERV1)	LINC00243	Intron	2
CP068272.2:31 324 347	313	SINE (Alu)	HCG26	Promoter	2
CP068272.2:31 351 684	173	SINE (Alu)	MICB	Intron	2
CP068272.2:32 343 351	293	SINE (Alu)	LOC124905397	Promoter	2
CP068272.2:32 412 812	309	SINE (Alu)	HLA-DRB1	Intron	2
CP068272.2:32 415 894	307	SINE (Alu)	HLA-DRB1	Intron	1
CP068272.2:32 423 285	1 113	LTR (ERVK)	HLA-DRB1	Promoter	2
CP068272.2:33 068 433	330	SINE (Alu)	LOC105375022	Promoter	2
CP068272.2:34 221 295	49	Retroposon (SVA)	RPS10-NUDT3	Intron	1
CP068272.2:34 229 514	329	SINE (Alu)	RPS10-NUDT3	Intron	2
CP068272.2:38 746 505	50	LTR (ERV1)	DNAH8	Intron	2
CP068272.2:38 778 843	313	SINE (Alu)	DNAH8	Intron	2
CP068272.2:42 430 462	160	SINE (Alu)	UBR2	Intron	2
CP068272.2:42 896 868	322	SINE (Alu)	KLC4	Intron	2
CP068272.2:43 181 094	66	LINE (L1)	ZNF318	Intron	2
CP068272.2:43 757 249	316	SINE (Alu)	LINC01512	Intron	2
CP068272.2:43 979 896	980	Retroposon (SVA)	TMEM63B	Intron	2
CP068272.2:45 127 498	323	SINE (Alu)	SUPT3H	Intron	2
CP068272.2:45 944 958	329	SINE (Alu)	CLIC5	Intron	2
CP068272.2:51 717 831	6 031	LINE (L1)	PKHD1	Intron	2
CP068272.2:53 584 806	282	SINE (Alu)	LOC124901334	Intron	2
CP068272.2:53 623 893	312	SINE (Alu)	LOC124901333	Intron	2
CP068272.2:54 692 012	140	SINE (Alu)	FAM83B	Intron	2
CP068272.2:56 735 169	2 587	Retroposon (SVA)	DST	Intron	2
CP068272.2:62 724 632	132	SINE (Alu)	KHDRBS2	Intron	2
CP068272.2:65 272 540	191	SINE (Alu)	EYS	Intron	2
CP068272.2:65 457 749	91	LINE (L1)	EYS	Intron	2
CP068272.2:65 763 014	327	SINE (Alu)	EYS	Intron	2
CP068272.2:66 607 855	308	SINE (Alu)	EYS	Intron	2
CP068272.2:68 497 032	322	SINE (Alu)	LOC105377842	Intron	2
CP068272.2:70 300 658	75	Retroposon (SVA)	ADGRB3	Intron	2
CP068272.2:76 425 221	316	SINE (Alu)	COX7A2	Intron	2
CP068272.2:76 483 634	49	SINE (Alu)	FILIP1	Intron	2
CP068272.2:78 387 367	308	SINE (Alu)	LOC101928570	Intron	2
CP068272.2:78 831 815	304	SINE (Alu)	MEI4	Intron	2
CP068272.2:78 884 409	320	SINE (Alu)	MEI4	Intron	2
CP068272.2:79 310 806	294	SINE (Alu)	LOC105377865	Intron	2
CP068272.2:81 765 649	321	SINE (Alu)	LOC648934	Promoter	2
CP068272.2:81 765 649	321	SINE (Alu)	LOC112267962	Intron	2
CP068272.2:83 853 159	57	LINE (L1)	LOC105377876	Intron	2
CP068272.2:84 185 928	312	SINE (Alu)	UBE3D	Intron	2
CP068272.2:93 892 171	325	SINE (Alu)	LINC02531	Intron	2
CP068272.2:97 741 692	322	SINE (Alu)	FHL5	Intron	2
CP068272.2:102 897 809	329	SINE (Alu)	GRIK2	Intron	2
CP068272.2:102 946 406	323	SINE (Alu)	GRIK2	Intron	2
CP068272.2:105 950 363	311	SINE (Alu)	HACE1	Intron	2
CP068272.2:111 483 984	310	SINE (Alu)	METTL24	Intron	2
CP068272.2:111 583 183	328	SINE (Alu)	DDO	Intron	2
CP068272.2:115 410 352	316	SINE (Alu)	HDAC2-AS2	Intron	2
CP068272.2:117 613 663	317	SINE (Alu)	DSE	Intron	2
CP068272.2:117 706 712	318	SINE (Alu)	TRAPPC3L	Intron	2
CP068272.2:119 490 091	293	SINE (Alu)	SLC35F1	Intron	2
CP068272.2:123 028 931	102	LINE (L2)	LOC105377979	Intron	2
CP068272.2:123 847 137	319	SINE (Alu)	PKIB	Intron	2
CP068272.2:125 365 522	321	SINE (Alu)	NKAIN2	Intron	2
CP068272.2:130 609 939	311	SINE (Alu)	LAMA2	Intron	2
CP068272.2:130 700 750	327	SINE (Alu)	LAMA2	Intron	2
CP068272.2:131 488 431	283	SINE (Alu)	SAMD3	Intron	2
CP068272.2:134 599 473	178	SINE (Alu)	EYA4	Intron	2
CP068272.2:137 234 155	278	SINE (Alu)	PDE7B	Intron	2
CP068272.2:137 339 890	70	SINE (Alu)	PDE7B	Intron	1
CP068272.2:140 470 041	314	SINE (Alu)	LOC102723690	Intron	2
CP068272.2:146 690 740	97	LINE (L1)	EPM2A	Intron	2
CP068272.2:149 677 325	283	SINE (Alu)	SASH1	Intron	2
CP068272.2:150 773 902	135	SINE (Alu)	GINM1	Intron	2
CP068272.2:151 002 840	302	SINE (Alu)	PCMT1	Intron	2
CP068272.2:154 514 334	316	SINE (Alu)	LOC105378066	Intron	2
CP068272.2:155 567 174	274	SINE (Alu)	LOC105378067	Promoter	2
CP068272.2:155 567 174	274	SINE (Alu)	LOC105378067	Intron	2
CP068272.2:162 273 904	317	SINE (Alu)	LOC105378093	Intron	2
CP068272.2:163 617 006	324	SINE (Alu)	PRKN	Intron	2
CP068272.2:163 955 920	357	SINE (Alu)	PRKN	Intron	2
CP068272.2:169 930 528	324	SINE (Alu)	SMOC2	Intron	2
CP068273.2:1 499 358	314	SINE (Alu)	SDHAP3	Intron	2
CP068273.2:1 857 114	310	SINE (Alu)	LOC124901165	Intron	2
CP068273.2:5 207 254	313	SINE (Alu)	ADAMTS16	Intron	2
CP068273.2:13 357 466	56	LINE (L1)	LOC105374660	Intron	2
CP068273.2:13 792 771	314	SINE (Alu)	DNAH5	Intron	2
CP068273.2:16 655 697	310	SINE (Alu)	MYO10	Intron	2
CP068273.2:20 930 728	316	SINE (Alu)	LINC02241	Intron	2
CP068273.2:31 791 020	306	SINE (Alu)	PDZD2	Intron	2
CP068273.2:34 235 086	321	SINE (Alu)	C1QTNF3-AMACR	Intron	2
CP068273.2:34 965 018	336	SINE (Alu)	RAI14	Intron	2
CP068273.2:37 812 852	623	Retroposon (SVA)	WDR70	Intron	2
CP068273.2:37 937 889	281	SINE (Alu)	WDR70	Intron	2
CP068273.2:39 542 380	330	SINE (Alu)	C9	Intron	2
CP068273.2:43 646 516	328	SINE (Alu)	CCL28	Intron	2
CP068273.2:43 769 164	68	LTR (ERV1)	LOC124900190	Intron	2
CP068273.2:43 770 523	328	SINE (Alu)	LOC124900190	Intron	2
CP068273.2:60 039 177	314	SINE (Alu)	PDE4D	Intron	2
CP068273.2:66 799 023	345	Retroposon (SVA)	ERBIN	Intron	2
CP068273.2:69 790 093	651	LINE (L1)	LOC107984116	Intron	2
CP068273.2:70 611 004	329	SINE (Alu)	LOC124906514	Intron	2
CP068273.2:77 524 589	123	Retroposon (SVA)	AGGF1	Intron	1
CP068273.2:78 760 230	285	SINE (Alu)	AP3B1	Intron	2
CP068273.2:80 202 146	305	SINE (Alu)	CMYA5	Intron	2
CP068273.2:83 675 994	305	SINE (Alu)	XRCC4	Intron	2
CP068273.2:86 116 881	345	SINE (Alu)	LOC105379061	Intron	2
CP068273.2:87 782 566	245	SINE (Alu)	RASA1	Intron	2
CP068273.2:88 585 051	328	SINE (Alu)	LOC105379070	Intron	2
CP068273.2:91 188 443	152	SINE (Alu)	ADGRV1	Intron	2
CP068273.2:96 508 940	325	SINE (Alu)	CAST	Intron	2
CP068273.2:107 349 776	325	SINE (Alu)	LINC01950	Intron	2
CP068273.2:111 869 884	319	LINE (L1)	CAMK4	Intron	2
CP068273.2:111 960 940	189	SINE (Alu)	CAMK4	Intron	2
CP068273.2:118 013 084	308	SINE (Alu)	LINC00992	Intron	2
CP068273.2:120 200 303	322	SINE (Alu)	LOC348958	Promoter	2
CP068273.2:121 151 743	69	LINE (L1)	PRR16	Intron	2
CP068273.2:123 455 518	319	SINE (Alu)	SNX24	Intron	2
CP068273.2:123 753 516	522	LINE (L1)	TUBB8P11	Intron	2
CP068273.2:126 220 892	859	LINE (L1)	LOC124901056	Intron	2
CP068273.2:137 581 808	233	LINE (L2)	SPOCK1	Intron	2
CP068273.2:137 712 676	288	SINE (Alu)	SPOCK1	Intron	2
CP068273.2:138 669 937	65	LTR (ERV1)	BRD8	Intron	2
CP068273.2:139 924 858	295	SINE (Alu)	SPATA24	Intron	2
CP068273.2:150 072 540	323	SINE (Alu)	CSNK1A1	Intron	2
CP068273.2:156 439 730	2 480	LINE (L1)	SGCD	Intron	2
CP068273.2:159 694 188	322	SINE (Alu)	RNF145	Intron	2
CP068273.2:161 129 583	344	SINE (Alu)	ATP10B	Intron	2
CP068273.2:171 270 546	84	SINE (Alu)	KCNIP1	Intron	2
CP068273.2:176 849 119	127	Retroposon (SVA)	SIMC1	Intron	2
CP068273.2:180 746 045	172	SINE (Alu)	RASGEF1C	Intron	2
CP068274.2:1 306 582	317	SINE (Alu)	MAEA	Intron	2
CP068274.2:1 318 269	132	SINE (Alu)	MAEA	Intron	2
CP068274.2:8 373 198	159	SINE (Alu)	ACOX3	Intron	2
CP068274.2:9 950 437	246	SINE (Alu)	SLC2A9	Intron	2
CP068274.2:9 954 701	315	SINE (Alu)	SLC2A9	Intron	2
CP068274.2:10 696 742	224	SINE (Alu)	CLNK	Intron	2
CP068274.2:14 827 303	5 443	LINE (L1)	LINC00504	Intron	2
CP068274.2:15 773 378	488	Retroposon (SVA)	CD38	Intron	1
CP068274.2:16 374 994	72	Retroposon (SVA)	LOC105374505	Intron	1
CP068274.2:19 347 230	325	SINE (Alu)	LINC02438	Intron	2
CP068274.2:20 388 569	987	LINE (L1)	SLIT2	Intron	2
CP068274.2:25 221 331	141	LTR (ERV1)	PI4K2B	Intron	2
CP068274.2:28 304 766	312	SINE (Alu)	LOC105374557	Intron	2
CP068274.2:37 478 028	84	Retroposon (SVA)	C4orf19	Intron	2
CP068274.2:37 501 700	111	LINE (L1)	C4orf19	Intron	2
CP068274.2:38 999 419	279	SINE (Alu)	TMEM156	Intron	2
CP068274.2:39 378 562	320	SINE (Alu)	KLB	Intron	2
CP068274.2:39 675 502	162	SINE (Alu)	UBE2K	Intron	1
CP068274.2:47 461 846	314	SINE (Alu)	ATP10D	Intron	2
CP068274.2:47 509 431	333	SINE (Alu)	ATP10D	Intron	2
CP068274.2:56 472 567	311	SINE (Alu)	SCFD2	Intron	2
CP068274.2:57 036 762	318	SINE (Alu)	LNX1	Intron	2
CP068274.2:59 545 987	195	SINE (Alu)	CRACD	Intron	2
CP068274.2:67 788 030	291	SINE (Alu)	TECRL	Intron	2
CP068274.2:72 534 968	321	SINE (Alu)	UGT2B7	Intron	2
CP068274.2:72 690 165	266	LINE (L1)	TUBB8P11	Intron	2
CP068274.2:73 581 961	186	LINE (L1)	CSN3	Promoter	2
CP068274.2:73 581 961	186	LINE (L1)	CSN3	Intron	2
CP068274.2:75 446 974	318	SINE (Alu)	NPFFR2	Intron	2
CP068274.2:79 443 320	315	SINE (Alu)	ART3	Intron	2
CP068274.2:80 258 529	49	Retroposon (SVA)	LOC105377294	Intron	2
CP068274.2:83 303 273	6 044	LINE (L1)	ANTXR2	Intron	2
CP068274.2:83 711 817	329	SINE (Alu)	CFAP299	Intron	2
CP068274.2:85 588 188	303	SINE (Alu)	LOC105377308	Intron	2
CP068274.2:85 803 947	318	SINE (Alu)	LOC105377310	Intron	2
CP068274.2:88 878 813	314	SINE (Alu)	ARHGAP24	Intron	2
CP068274.2:88 913 506	72	LINE (L1)	ARHGAP24	Intron	2
CP068274.2:90 440 361	330	SINE (Alu)	AFF1	Intron	2
CP068274.2:90 637 537	142	SINE (Alu)	HSD17B13	Intron	2
CP068274.2:92 091 985	319	SINE (Alu)	FAM13A	Intron	2
CP068274.2:95 798 087	318	SINE (Alu)	GRID2	Intron	2
CP068274.2:98 264 406	317	SINE (Alu)	BMPR1B	Intron	2
CP068274.2:99 966 112	318	SINE (Alu)	LINC02267	Intron	2
CP068274.2:104 434 814	318	SINE (Alu)	PPP3CA	Intron	2
CP068274.2:105 736 350	1 885	LINE (L1)	LOC105377621	Intron	2
CP068274.2:106 266 332	2 511	LINE (L1)	SLC9B1	Intron	2
CP068274.2:107 284 829	623	LTR (ERV1)	LINC02503	Intron	2
CP068274.2:107 856 593	318	SINE (Alu)	CXXC4-AS1	Intron	2
CP068274.2:112 879 734	322	SINE (Alu)	MCUB	Intron	2
CP068274.2:122 158 905	317	SINE (Alu)	SYNPO2	Intron	2
CP068274.2:124 831 133	180	SINE (Alu)	LOC107986310	Intron	2
CP068274.2:137 323 693	306	SINE (Alu)	PABPC4L	Intron	2
CP068274.2:152 561 796	338	SINE (Alu)	LINC02355	Intron	2
CP068274.2:153 984 117	97	Retroposon (SVA)	LRBA	Intron	1
CP068274.2:154 538 658	126	Retroposon (SVA)	SH3D19	Intron	2
CP068274.2:154 743 431	838	LINE (L1)	FHIP1A	Intron	2
CP068274.2:157 304 320	318	SINE (Alu)	LOC101927947	Intron	2
CP068274.2:157 545 206	74	LTR (ERVL)	LOC101927947	Intron	1
CP068274.2:158 831 227	111	SINE (Alu)	LOC105377505	Intron	2
CP068274.2:163 055 733	335	SINE (Alu)	LOC107986324	Intron	2
CP068274.2:164 757 919	59	LINE (L1)	FSTL5	Intron	2
CP068274.2:164 785 720	310	SINE (Alu)	FSTL5	Intron	2
CP068274.2:166 928 648	314	SINE (Alu)	MARCHF1	Intron	2
CP068274.2:167 460 677	278	SINE (Alu)	MARCHF1	Intron	2
CP068274.2:168 615 612	322	SINE (Alu)	KLHL2	Intron	2
CP068274.2:173 273 624	299	SINE (Alu)	LOC105377530	Intron	2
CP068274.2:176 567 723	315	SINE (Alu)	GALNT7	Intron	2
CP068274.2:177 630 266	311	SINE (Alu)	CEP44	Intron	2
CP068274.2:177 952 805	326	SINE (Alu)	LOC105377549	Promoter	2
CP068274.2:177 952 805	326	SINE (Alu)	LOC105377549	Intron	2
CP068274.2:180 879 933	64	LTR (ERV1)	AGA-DT	Intron	2
CP068274.2:184 287 164	225	Retroposon (SVA)	LOC105377567	Intron	2
CP068274.2:188 577 957	309	SINE (Alu)	SNX25	Intron	2
CP068274.2:188 771 002	325	SINE (Alu)	CFAP96	Intron	2
CP068274.2:188 804 271	289	SINE (Alu)	CCDC110	Intron	2
CP068274.2:192 726 791	319	SINE (Alu)	LOC105377614	Intron	2
CP068275.2:2 584 962	314	SINE (Alu)	CNTN4	Intron	2
CP068275.2:7 563 823	311	SINE (Alu)	GRM7	Intron	2
CP068275.2:12 308 635	308	SINE (Alu)	PPARG	Intron	2
CP068275.2:12 655 079	175	Retroposon (SVA)	RAF1	Intron	1
CP068275.2:14 043 590	332	SINE (Alu)	TPRXL	Intron	2
CP068275.2:17 692 738	322	SINE (Alu)	TBC1D5	Intron	2
CP068275.2:17 706 756	146	Retroposon (SVA)	TBC1D5	Intron	2
CP068275.2:24 782 410	321	SINE (Alu)	LOC107986070	Intron	2
CP068275.2:24 950 583	2 953	LINE (L1)	RARB	Intron	2
CP068275.2:25 252 739	71	LINE (L1)	RARB	Intron	2
CP068275.2:25 351 236	318	SINE (Alu)	RARB	Intron	2
CP068275.2:28 128 297	324	SINE (Alu)	LOC105377008	Intron	2
CP068275.2:29 475 804	159	LTR (ERV1)	RBMS3	Intron	2
CP068275.2:29 581 547	321	SINE (Alu)	RBMS3	Intron	2
CP068275.2:33 513 436	876	LINE (L1)	CLASP2	Intron	2
CP068275.2:34 318 450	6 091	LINE (L1)	LINC01811	Intron	2
CP068275.2:36 454 965	138	LTR (ERV1)	STAC	Intron	2
CP068275.2:38 119 250	134	SINE (Alu)	DLEC1	Intron	2
CP068275.2:42 872 482	326	SINE (Alu)	ACKR2	Intron	2
CP068275.2:45 150 159	315	SINE (Alu)	CDCP1	Intron	2
CP068275.2:45 517 532	315	SINE (Alu)	LARS2	Intron	2
CP068275.2:47 760 449	317	SINE (Alu)	SMARCC1	Intron	2
CP068275.2:49 943 579	325	SINE (Alu)	MON1A	Intron	2
CP068275.2:50 054 726	268	SINE (Alu)	RBM6	Intron	2
CP068275.2:50 341 806	97	Retroposon (SVA)	HYAL1	Intron	1
CP068275.2:50 871 697	331	SINE (Alu)	DOCK3	Intron	2
CP068275.2:51 280 054	77	Retroposon (SVA)	DOCK3	Intron	2
CP068275.2:59 950 161	108	SINE (Alu)	FHIT	Intron	2
CP068275.2:61 714 843	280	Retroposon (SVA)	PTPRG	Intron	2
CP068275.2:61 714 843	177	Retroposon (SVA)	PTPRG	Intron	2
CP068275.2:66 961 938	131	LINE (L1)	LOC105377144	Intron	2
CP068275.2:67 489 000	97	Retroposon (SVA)	SUCLG2	Intron	2
CP068275.2:68 878 080	290	SINE (Alu)	TAFA4	Intron	2
CP068275.2:70 402 714	331	SINE (Alu)	SAMMSON	Intron	2
CP068275.2:71 229 921	301	SINE (Alu)	FOXP1	Intron	2
CP068275.2:78 864 620	88	LINE (L1)	ROBO1	Intron	2
CP068275.2:82 376 966	107	LTR (ERV1)	LINC02008	Intron	2
CP068275.2:86 130 106	331	SINE (Alu)	CADM2	Intron	2
CP068275.2:114 228 328	339	SINE (Alu)	LOC105374039	Intron	2
CP068275.2:114 926 706	49	LINE (L1)	SLC9C1	Intron	2
CP068275.2:115 469 172	3 449	Retroposon (SVA)	LINC02042	Intron	2
CP068275.2:127 575 229	323	SINE (Alu)	ITGB5	Intron	2
CP068275.2:127 816 677	324	SINE (Alu)	SLC12A8	Intron	2
CP068275.2:128 503 270	307	SINE (Alu)	TUBB8P11	Intron	2
CP068275.2:132 210 422	306	SINE (Alu)	IFT122	Intron	2
CP068275.2:135 215 099	403	Retroposon (SVA)	DNAJC13	Intron	2
CP068275.2:135 215 488	49	Retroposon (SVA)	DNAJC13	Intron	2
CP068275.2:145 488 419	314	SINE (Alu)	TRPC1	Intron	2
CP068275.2:146 222 567	314	SINE (Alu)	SLC9A9	Intron	2
CP068275.2:146 290 331	107	SINE (Alu)	SLC9A9	Intron	2
CP068275.2:152 131 587	97	Retroposon (SVA)	TM4SF1-AS1	Intron	2
CP068275.2:152 131 792	253	Retroposon (SVA)	TM4SF1-AS1	Intron	2
CP068275.2:161 020 241	337	SINE (Alu)	RSRC1	Intron	2
CP068275.2:163 183 722	176	SINE (Alu)	SMC4	Intron	2
CP068275.2:171 951 917	309	SINE (Alu)	MECOM	Intron	2
CP068275.2:177 480 228	321	SINE (Alu)	NAALADL2	Intron	2
CP068275.2:181 924 701	49	Retroposon (SVA)	PIK3CA-DT	Intron	1
CP068275.2:181 925 311	67	Retroposon (SVA)	PIK3CA-DT	Intron	2
CP068275.2:190 057 582	328	SINE (Alu)	MASP1	Intron	2
CP068275.2:191 982 178	321	SINE (Alu)	TPRG1	Intron	2
CP068275.2:933 241	315	SINE (Alu)	CNTN6	Intron	2
CP068276.2:1 198 288	306	SINE (Alu)	SNTG2	Intron	2
CP068276.2:1 468 423	329	SINE (Alu)	TPO	Intron	2
CP068276.2:15 057 246	330	SINE (Alu)	NBAS	Intron	2
CP068276.2:24 290 233	122	SINE (Alu)	ITSN2	Intron	2
CP068276.2:26 286 406	328	SINE (Alu)	HADHB	Intron	2
CP068276.2:42 610 850	302	Retroposon (SVA)	MTA3	Intron	2
CP068276.2:43 303 387	357	Retroposon (SVA)	THADA	Intron	2
CP068276.2:44 594 241	447	Retroposon (SVA)	CAMKMT	Intron	1
CP068276.2:44 604 010	316	SINE (Alu)	CAMKMT	Intron	2
CP068276.2:48 560 591	2 989	Retroposon (SVA)	STON1-GTF2A1L	Intron	2
CP068276.2:50 018 018	132	SINE (Alu)	NRXN1	Intron	2
CP068276.2:53 161 221	64	LINE (L1)	LOC105369165	Intron	2
CP068276.2:54 460 543	248	SINE (Alu)	SPTBN1	Promoter	2
CP068276.2:54 460 543	248	SINE (Alu)	SPTBN1	Intron	2
CP068276.2:63 730 049	351	Retroposon (SVA)	WDPCP	Intron	1
CP068276.2:65 116 309	304	SINE (Alu)	RAB1A	Intron	2
CP068276.2:69 529 836	317	SINE (Alu)	AAK1	Intron	2
CP068276.2:74 292 982	327	SINE (Alu)	SLC4A5	Intron	2
CP068276.2:80 542 014	269	SINE (Alu)	CTNNA2	Intron	2
CP068276.2:87 918 976	449	LINE (L1)	RGPD2	Intron	2
CP068276.2:102 198 725	315	SINE (Alu)	MAP4K4	Intron	2
CP068276.2:106 297 452	316	SINE (Alu)	NCK2	Intron	2
CP068276.2:107 771 785	320	SINE (Alu)	LINC01789	Intron	2
CP068276.2:111 709 562	329	SINE (Alu)	MIR4435-2HG	Intron	2
CP068276.2:112 385 913	325	SINE (Alu)	MERTK	Intron	2
CP068276.2:113 889 028	316	SINE (Alu)	ZNG1B	Intron	2
CP068276.2:128 316 576	326	SINE (Alu)	AMMECR1L	Intron	2
CP068276.2:131 521 062	319	SINE (Alu)	FAM168B	Intron	2
CP068276.2:133 554 576	319	SINE (Alu)	NCKAP5	Intron	2
CP068276.2:141 222 232	328	SINE (Alu)	LRP1B	Intron	2
CP068276.2:141 752 388	57	LINE (L1)	LRP1B	Intron	2
CP068276.2:148 342 955	299	SINE (Alu)	ACVR2A	Intron	2
CP068276.2:152 612 938	173	Retroposon (SVA)	STAM2	Intron	1
CP068276.2:153 756 655	321	SINE (Alu)	GALNT13	Intron	2
CP068276.2:156 904 280	49	Retroposon (SVA)	GPD2	Intron	1
CP068276.2:156 904 280	49	Retroposon (SVA)	GPD2	Intron	1
CP068276.2:158 030 254	324	SINE (Alu)	ACVR1C	Intron	2
CP068276.2:158 882 881	329	SINE (Alu)	CCDC148	Intron	2
CP068276.2:159 710 998	156	SINE (Alu)	WDSUB1	Intron	2
CP068276.2:169 505 778	321	SINE (Alu)	ABCB11	Intron	2
CP068276.2:173 186 817	116	Retroposon (SVA)	PDK1	Intron	2
CP068276.2:174 714 646	320	SINE (Alu)	OLA1	Intron	2
CP068276.2:175 359 957	318	SINE (Alu)	CHN1	Intron	2
CP068276.2:177 936 293	333	SINE (Alu)	AGPS	Intron	2
CP068276.2:177 969 023	340	SINE (Alu)	AGPS	Intron	2
CP068276.2:188 787 065	302	SINE (Alu)	GULP1	Intron	2
CP068276.2:191 887 362	477	Retroposon (SVA)	MYO1B	Intron	2
CP068276.2:195 638 179	322	SINE (Alu)	LOC105376755	Intron	2
CP068276.2:195 693 163	329	SINE (Alu)	LOC105376755	Intron	2
CP068276.2:198 382 298	311	SINE (Alu)	PLCL1	Intron	2
CP068276.2:198 513 690	137	SINE (Alu)	PLCL1	Intron	2
CP068276.2:208 081 694	320	SINE (Alu)	METTL21A	Intron	2
CP068276.2:209 066 826	324	SINE (Alu)	LOC101927960	Intron	2
CP068276.2:212 323 899	314	SINE (Alu)	ERBB4	Intron	2
CP068276.2:215 319 683	76	Retroposon (SVA)	SNHG31	Intron	2
CP068276.2:215 369 783	157	SINE (Alu)	SNHG31	Intron	2
CP068276.2:216 169 155	326	SINE (Alu)	LOC102724861	Intron	2
CP068276.2:216 174 633	132	SINE (Alu)	LOC102724861	Intron	1
CP068276.2:217 798 533	304	SINE (Alu)	DIRC3-AS1	Intron	2
CP068276.2:219 198 425	327	SINE (Alu)	TTLL4	Intron	2
CP068276.2:220 421 760	313	SINE (Alu)	LOC105373890	Intron	2
CP068276.2:223 381 038	2 557	Retroposon (SVA)	ACSL3	Intron	1
CP068276.2:223 415 723	316	SINE (Alu)	ACSL3	Intron	2
CP068276.2:233 687 454	148	SINE (Alu)	INPP5D	Intron	2
CP068276.2:241 825 383	148	LTR (ERVL)	SEPTIN2	Intron	1
CP068277.2:6 326 450	176	SINE (Alu)	CAMTA1	Promoter	2
CP068277.2:6 326 450	176	SINE (Alu)	CAMTA1	Intron	2
CP068277.2:11 959 745	2 289	Retroposon (SVA)	VPS13D	Intron	2
CP068277.2:17 172 541	321	SINE (Alu)	PADI4	Intron	2
CP068277.2:18 080	317	SINE (Alu)	LOC127239154	Intron	2
CP068277.2:20 992 774	315	SINE (Alu)	EIF4G3	Intron	2
CP068277.2:28 942 968	322	SINE (Alu)	EPB41	Intron	2
CP068277.2:38 352 286	74	SINE (Alu)	LOC105378657	Intron	2
CP068277.2:39 079 394	316	SINE (Alu)	MACF1	Intron	2
CP068277.2:41 795 200	326	SINE (Alu)	HIVEP3	Intron	2
CP068277.2:41 888 856	1 497	LINE (L1)	HIVEP3	Intron	2
CP068277.2:42 148 108	312	SINE (Alu)	FOXJ3	Intron	2
CP068277.2:43 262 333	329	SINE (Alu)	SZT2	Intron	2
CP068277.2:50 326 587	337	SINE (Alu)	FAF1	Intron	2
CP068277.2:56 301 172	313	SINE (Alu)	LOC124905710	Intron	2
CP068277.2:57 484 949	211	SINE (Alu)	DAB1	Intron	2
CP068277.2:58 151 162	270	SINE (Alu)	DAB1	Intron	2
CP068277.2:62 068 645	318	SINE (Alu)	RPS15AP7	Promoter	2
CP068277.2:65 467 967	316	SINE (Alu)	LEPR	Intron	2
CP068277.2:69 941 365	331	SINE (Alu)	LRRC7	Intron	2
CP068277.2:72 052 222	316	SINE (Alu)	NEGR1	Intron	2
CP068277.2:74 568 856	3 708	LINE (L1)	CRYZ	Intron	2
CP068277.2:77 006 803	307	SINE (Alu)	PIGK	Intron	2
CP068277.2:77 195 456	126	SINE (MIR)	AK5	Intron	1
CP068277.2:78 774 660	319	SINE (Alu)	ADGRL4	Intron	2
CP068277.2:81 683 953	322	SINE (Alu)	ADGRL2	Intron	2
CP068277.2:82 984 353	1 737	LINE (L1)	LINC01362	Intron	2
CP068277.2:89 748 218	269	SINE (Alu)	LRRC8D	Intron	2
CP068277.2:90 378 503	318	SINE (Alu)	LINC02787	Intron	2
CP068277.2:97 099 968	324	SINE (Alu)	DPYD-AS1	Intron	2
CP068277.2:98 993 317	299	SINE (Alu)	PLPPR5-AS1	Intron	2
CP068277.2:99 773 243	142	SINE (Alu)	LOC124904230	Intron	2
CP068277.2:107 637 360	308	SINE (Alu)	VAV3	Intron	2
CP068277.2:109 210 173	76	Retroposon (SVA)	ELAPOR1	Intron	2
CP068277.2:111 310 361	61	LINE (L1)	CHIA	Intron	2
CP068277.2:111 575 341	295	SINE (Alu)	RAP1A	Intron	2
CP068277.2:112 860 458	314	SINE (Alu)	LINC01356	Intron	2
CP068277.2:114 512 654	310	SINE (Alu)	TRIM33	Intron	2
CP068277.2:117 439 076	173	Retroposon (SVA)	MAN1A2	Intron	2
CP068277.2:117 439 865	79	Retroposon (SVA)	MAN1A2	Intron	2
CP068277.2:117 557 840	222	SINE (Alu)	VPS25P1	Promoter	2
CP068277.2:149 352 606	277	SINE (Alu)	ANP32E	Intron	2
CP068277.2:150 113 934	336	SINE (Alu)	ANXA9	Intron	2
CP068277.2:155 092 707	320	SINE (Alu)	ARHGEF2	Intron	2
CP068277.2:160 560 569	359	Retroposon (SVA)	TRE-TTC4-2	Promoter	1
CP068277.2:161 611 471	312	SINE (Alu)	NOS1AP	Intron	2
CP068277.2:161 637 228	319	SINE (Alu)	NOS1AP	Intron	2
CP068277.2:162 592 388	333	SINE (Alu)	RGS5	Intron	2
CP068277.2:165 238 275	2 352	Retroposon (SVA)	UCK2	Intron	2
CP068277.2:166 450 102	62	LTR (ERVL)	STYXL2	Intron	2
CP068277.2:167 095 119	317	SINE (Alu)	MPZL1	Intron	2
CP068277.2:168 612 294	126	LINE (L1)	NME7	Intron	2
CP068277.2:173 333 814	325	SINE (Alu)	RC3H1	Intron	2
CP068277.2:178 877 824	352	SINE (Alu)	AXDND1	Intron	2
CP068277.2:180 974 636	322	SINE (Alu)	CACNA1E	Intron	2
CP068277.2:180 987 562	282	SINE (Alu)	CACNA1E	Intron	2
CP068277.2:181 811 277	323	SINE (Alu)	RGSL1	Intron	2
CP068277.2:196 178 912	323	SINE (Alu)	CFHR4	Intron	2
CP068277.2:196 304 551	286	SINE (Alu)	F13B	Intron	2
CP068277.2:197 760 067	319	SINE (Alu)	LOC105371677	Intron	2
CP068277.2:198 619 298	320	SINE (Alu)	LINC02789	Intron	2
CP068277.2:203 533 894	329	SINE (Alu)	PLEKHA6	Intron	2
CP068277.2:203 640 460	329	SINE (Alu)	PLEKHA6	Intron	2
CP068277.2:205 230 886	313	SINE (Alu)	SLC26A9-AS1	Intron	2
CP068277.2:209 360 883	315	SINE (Alu)	SYT14	Intron	2
CP068277.2:210 357 660	118	Retroposon (SVA)	KCNH1	Intron	2
CP068277.2:211 543 946	1 482	Retroposon (SVA)	PPP2R5A	Intron	2
CP068277.2:211 713 734	84	SINE (Alu)	LINC02771	Intron	2
CP068277.2:211 837 436	317	SINE (Alu)	ATF3	Intron	2
CP068277.2:212 046 263	2 410	Retroposon (SVA)	TATDN3	Intron	2
CP068277.2:215 252 250	169	SINE (Alu)	USH2A	Intron	2
CP068277.2:216 822 048	301	SINE (Alu)	GPATCH2	Intron	2
CP068277.2:216 985 245	312	SINE (Alu)	SPATA17	Intron	2
CP068277.2:221 722 301	171	Retroposon (SVA)	LOC124905750	Intron	2
CP068277.2:221 931 096	328	SINE (Alu)	AIDA	Intron	2
CP068277.2:225 007 009	178	SINE (Alu)	EPHX1	Intron	2
CP068277.2:226 463 590	324	SINE (Alu)	CDC42BPA	Intron	2
CP068277.2:226 503 106	135	SINE (Alu)	CDC42BPA	Intron	2
CP068277.2:230 329 881	303	SINE (Alu)	TTC13	Intron	2
CP068277.2:232 592 710	314	SINE (Alu)	PCNX2	Intron	2
CP068277.2:234 701 066	85	Retroposon (SVA)	ARID4B	Intron	2
CP068277.2:235 287 889	335	SINE (Alu)	LOC105373215	Promoter	2
CP068277.2:235 831 713	323	SINE (Alu)	EDARADD	Intron	2
CP068277.2:236 817 294	319	SINE (Alu)	RYR2	Intron	2
CP068277.2:239 030 423	312	SINE (Alu)	CHRM3	Intron	2
CP068277.2:239 865 254	323	SINE (Alu)	FMN2	Intron	2
CP068277.2:241 560 354	6 041	LINE (L1)	PLD5	Intron	2
CP068277.2:245 477 474	318	SINE (Alu)	SMYD3	Intron	2
CP068277.2:245 665 518	331	SINE (Alu)	SMYD3	Intron	2
CP068277.2:245 851 672	317	SINE (Alu)	SMYD3	Intron	2
CP068277.2:246 075 792	266	SINE (Alu)	CNST	Intron	2
CP068277.2:246 295 973	300	SINE (Alu)	AHCTF1	Intron	2

2.2 Class II Elements

2.2.1 Distribution

1. Unique class II TE insertions occurrences on the genome. B) Gene annotations of class II TE insertions on the genome. A single TE may be annotated more than once.

2.2.2 Class II TEs on gene sequences

Click to show table with 5 rows.

Position	Length	Type	Gene	Annotation	Occurrences
CP068258.2:1 634 241	142	DNA (hAT)	SIRPB1	Intron	2
CP068258.2:55 000 758	56	DNA (hAT)	TSHZ2	Intron	1
CP068268.2:29 625 323	54	DNA (TcMar)	SVIL	Intron	2
CP068270.2:3 478 778	181	DNA (hAT)	CSMD1	Intron	2
CP068273.2:178 323 193	93	DNA (TcMar)	FAM153A	Intron	1

3 TE Deletions

It is common to find deletions whose coordinates match those of a TE sequence in the reference genome. This section presents them.

• 1 395 TE deletions have been found, adding up to 2 736 occurrences among cases.
• These deletions have a mean prevalence per sample of 2.0 ± 0.19 (median of 2).
• The deletion length is in the range of 304-331 bp for 50% of them (Q2-Q3, both included), and the maximum length found was 8 487, for a deleted ERVK sequence.

3.1 Allele frequency

• The mean AF for deletions is 0.79 ± 0.25 (median of 1).
• With 700 (700 of which has passed the stringent filtering) deletions appearing in a homozygous state in all patients (Fig. 7). On the other hand, 30 deletions were genotyped as 0/0 on all cases, and have not been included in the rest of this section.

Allele frequency is shown for TE deletions for each chromosome. Each dot marks a different deletion.

4 Enrichment analysis

This section shows the result of enrichment analysis on the genes affected with TE insertions.

4.1 Gene Ontology

4.1.0.1 Annotation group: MF (Molecular Function)

Barplot for enriched categories. Values on top have lower p values.

The category with lowest p value is Pyrin domain binding (1.336382e-11), and the highest (among the lowest 10) is guanyl-nucleotide exchange factor activity (0.01491454). The ratio is 1116039049.19, i.e., they differ in 9 orders of magnitude.

Click to show/hide table with 100 rows for categories with the lowest p value.

ID	Description	GeneRatio	BgRatio	pvalue	p.adjust	qvalue	Count	GeneRatioCalc
GO:0032090	Pyrin domain binding	10/689	11/20758	1.626e-14	1.336e-11	1.22e-11	10	0.01451
GO:0046703	natural killer cell lectin-like receptor binding	8/689	27/20758	1.795e-06	0.0004127	0.0003769	8	0.01161
GO:0042609	CD4 receptor binding	6/689	13/20758	1.84e-06	0.0004127	0.0003769	6	0.008708
GO:0005216	ion channel activity	37/689	480/20758	2.008e-06	0.0004127	0.0003769	37	0.0537
GO:0035091	phosphatidylinositol binding	23/689	288/20758	0.0001007	0.01454	0.01327	23	0.03338
GO:0003779	actin binding	32/689	471/20758	0.0001132	0.01454	0.01327	32	0.04644
GO:0022836	gated channel activity	27/689	372/20758	0.0001316	0.01454	0.01327	27	0.03919
GO:0140303	intramembrane lipid transporter activity	8/689	47/20758	0.0001415	0.01454	0.01327	8	0.01161
GO:0140327	flippase activity	5/689	17/20758	0.0001762	0.01491	0.01362	5	0.007257
GO:0005085	guanyl-nucleotide exchange factor activity	20/689	245/20758	0.0002095	0.01491	0.01362	20	0.02903
GO:0004791	thioredoxin-disulfide reductase activity	4/689	10/20758	0.0002154	0.01491	0.01362	4	0.005806
GO:0005096	GTPase activator activity	23/689	304/20758	0.0002235	0.01491	0.01362	23	0.03338
GO:0005516	calmodulin binding	18/689	210/20758	0.0002359	0.01491	0.01362	18	0.02612
GO:0005262	calcium channel activity	13/689	126/20758	0.0002898	0.01702	0.01554	13	0.01887
GO:0005261	cation channel activity	25/689	360/20758	0.0004467	0.02341	0.02137	25	0.03628
GO:0046873	metal ion transmembrane transporter activity	30/689	466/20758	0.0004556	0.02341	0.02137	30	0.04354
GO:0005543	phospholipid binding	31/689	495/20758	0.0005858	0.02833	0.02586	31	0.04499
GO:0047134	protein-disulfide reductase (NAD(P)) activity	4/689	13/20758	0.0006771	0.03034	0.0277	4	0.005806
GO:0005200	structural constituent of cytoskeleton	12/689	121/20758	0.0007014	0.03034	0.0277	12	0.01742
GO:0005319	lipid transporter activity	15/689	176/20758	0.0008057	0.03197	0.02919	15	0.02177
GO:0015085	calcium ion transmembrane transporter activity	13/689	142/20758	0.0009122	0.03197	0.02919	13	0.01887
GO:0070679	inositol 1,4,5 trisphosphate binding	4/689	14/20758	0.0009232	0.03197	0.02919	4	0.005806
GO:0140333	glycerophospholipid flippase activity	4/689	14/20758	0.0009232	0.03197	0.02919	4	0.005806
GO:0042608	T cell receptor binding	6/689	35/20758	0.0009333	0.03197	0.02919	6	0.008708
GO:0016668	oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor	4/689	15/20758	0.001226	0.04031	0.03681	4	0.005806
GO:0030247	polysaccharide binding	6/689	38/20758	0.001459	0.04613	0.04212	6	0.008708
GO:0005548	phospholipid transporter activity	8/689	67/20758	0.001641	0.04997	0.04563	8	0.01161
GO:0051959	dynein light intermediate chain binding	5/689	27/20758	0.001747	0.05128	0.04682	5	0.007257
GO:0045296	cadherin binding	23/689	357/20758	0.001997	0.05556	0.05073	23	0.03338
GO:0015385	sodium:proton antiporter activity	4/689	17/20758	0.002028	0.05556	0.05073	4	0.005806
GO:0140326	ATPase-coupled intramembrane lipid transporter activity	5/689	29/20758	0.002433	0.06451	0.0589	5	0.007257
GO:0030165	PDZ domain binding	9/689	89/20758	0.002773	0.07124	0.06505	9	0.01306
GO:0004675	transmembrane receptor protein serine/threonine kinase activity	4/689	19/20758	0.003133	0.07626	0.06963	4	0.005806
GO:0033038	bitter taste receptor activity	6/689	44/20758	0.003154	0.07626	0.06963	6	0.008708
GO:0005546	phosphatidylinositol-4,5-bisphosphate binding	9/689	92/20758	0.003473	0.08157	0.07448	9	0.01306
GO:0022839	ion gated channel activity	6/689	48/20758	0.004904	0.112	0.1022	6	0.008708
GO:0005229	intracellular calcium activated chloride channel activity	4/689	22/20758	0.005464	0.1152	0.1052	4	0.005806
GO:0051139	metal cation:proton antiporter activity	4/689	22/20758	0.005464	0.1152	0.1052	4	0.005806
GO:0061778	intracellular chloride channel activity	4/689	22/20758	0.005464	0.1152	0.1052	4	0.005806
GO:1902936	phosphatidylinositol bisphosphate binding	10/689	118/20758	0.005954	0.1204	0.11	10	0.01451
GO:0008527	taste receptor activity	6/689	50/20758	0.006007	0.1204	0.11	6	0.008708
GO:0017124	SH3 domain binding	11/689	139/20758	0.006703	0.1312	0.1198	11	0.01597
GO:0097110	scaffold protein binding	7/689	69/20758	0.007823	0.1463	0.1336	7	0.01016
GO:0016798	hydrolase activity, acting on glycosyl bonds	11/689	142/20758	0.00783	0.1463	0.1336	11	0.01597
GO:0098632	cell-cell adhesion mediator activity	6/689	54/20758	0.008737	0.1596	0.1457	6	0.008708
GO:0015079	potassium ion transmembrane transporter activity	12/689	166/20758	0.009551	0.1707	0.1558	12	0.01742
GO:0008381	mechanosensitive ion channel activity	4/689	26/20758	0.01006	0.1759	0.1606	4	0.005806
GO:0008066	glutamate receptor activity	4/689	27/20758	0.0115	0.197	0.1799	4	0.005806
GO:0015631	tubulin binding	22/689	392/20758	0.012	0.2013	0.1838	22	0.03193
GO:0034236	protein kinase A catalytic subunit binding	3/689	15/20758	0.01229	0.2021	0.1845	3	0.004354
GO:0042578	phosphoric ester hydrolase activity	22/689	396/20758	0.01336	0.2154	0.1967	22	0.03193
GO:0004674	protein serine/threonine kinase activity	25/689	470/20758	0.01448	0.2207	0.2015	25	0.03628
GO:0008559	ABC-type xenobiotic transporter activity	3/689	16/20758	0.01476	0.2207	0.2015	3	0.004354
GO:0015386	potassium:proton antiporter activity	3/689	16/20758	0.01476	0.2207	0.2015	3	0.004354
GO:0140328	floppase activity	3/689	16/20758	0.01476	0.2207	0.2015	3	0.004354
GO:0098631	cell adhesion mediator activity	6/689	64/20758	0.01924	0.2806	0.2562	6	0.008708
GO:0019905	syntaxin binding	7/689	83/20758	0.02031	0.2806	0.2562	7	0.01016
GO:0015278	calcium-release channel activity	3/689	18/20758	0.02048	0.2806	0.2562	3	0.004354
GO:0017128	phospholipid scramblase activity	3/689	18/20758	0.02048	0.2806	0.2562	3	0.004354
GO:0030275	LRR domain binding	3/689	18/20758	0.02048	0.2806	0.2562	3	0.004354
GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	8/689	104/20758	0.02246	0.2912	0.2659	8	0.01161
GO:0005154	epidermal growth factor receptor binding	4/689	33/20758	0.02296	0.2912	0.2659	4	0.005806
GO:0005451	monovalent cation:proton antiporter activity	4/689	33/20758	0.02296	0.2912	0.2659	4	0.005806
GO:0015299	solute:proton antiporter activity	4/689	33/20758	0.02296	0.2912	0.2659	4	0.005806
GO:0032395	MHC class II receptor activity	6/689	67/20758	0.02359	0.2912	0.2659	6	0.008708
GO:0004970	ionotropic glutamate receptor activity	3/689	19/20758	0.02374	0.2912	0.2659	3	0.004354
GO:0008569	minus-end-directed microtubule motor activity	3/689	19/20758	0.02374	0.2912	0.2659	3	0.004354
GO:0098960	postsynaptic neurotransmitter receptor activity	7/689	86/20758	0.02417	0.2921	0.2667	7	0.01016
GO:0140828	metal cation:monoatomic cation antiporter activity	4/689	34/20758	0.02535	0.302	0.2758	4	0.005806
GO:1901981	phosphatidylinositol phosphate binding	12/689	191/20758	0.02601	0.3054	0.2789	12	0.01742
GO:0051015	actin filament binding	14/689	236/20758	0.02647	0.3065	0.2798	14	0.02032
GO:0052745	inositol phosphate phosphatase activity	3/689	20/20758	0.02725	0.3111	0.284	3	0.004354
GO:0000287	magnesium ion binding	14/689	240/20758	0.02995	0.3111	0.284	14	0.02032
GO:0015276	ligand-gated ion channel activity	10/689	152/20758	0.0305	0.3111	0.284	10	0.01451
GO:0022834	ligand-gated channel activity	10/689	152/20758	0.0305	0.3111	0.284	10	0.01451
GO:0044325	transmembrane transporter binding	9/689	131/20758	0.03069	0.3111	0.284	9	0.01306
GO:0015103	inorganic anion transmembrane transporter activity	11/689	174/20758	0.03094	0.3111	0.284	11	0.01597
GO:0005001	transmembrane receptor protein tyrosine phosphatase activity	3/689	21/20758	0.03103	0.3111	0.284	3	0.004354
GO:0015125	bile acid transmembrane transporter activity	3/689	21/20758	0.03103	0.3111	0.284	3	0.004354
GO:0019198	transmembrane receptor protein phosphatase activity	3/689	21/20758	0.03103	0.3111	0.284	3	0.004354
GO:0022821	solute:potassium antiporter activity	3/689	21/20758	0.03103	0.3111	0.284	3	0.004354
GO:0051010	microtubule plus-end binding	3/689	21/20758	0.03103	0.3111	0.284	3	0.004354
GO:0106310	protein serine kinase activity	20/689	383/20758	0.03157	0.3127	0.2855	20	0.02903
GO:0051117	ATPase binding	7/689	92/20758	0.03334	0.3232	0.2951	7	0.01016
GO:0045505	dynein intermediate chain binding	4/689	37/20758	0.03342	0.3232	0.2951	4	0.005806
GO:0043178	alcohol binding	7/689	93/20758	0.03506	0.3318	0.3029	7	0.01016
GO:0051018	protein kinase A binding	5/689	55/20758	0.03535	0.3318	0.3029	5	0.007257
GO:0022843	voltage-gated cation channel activity	10/689	156/20758	0.03552	0.3318	0.3029	10	0.01451
GO:0005544	calcium-dependent phospholipid binding	5/689	56/20758	0.0378	0.3491	0.3188	5	0.007257
GO:0019211	phosphatase activator activity	3/689	23/20758	0.03936	0.3552	0.3243	3	0.004354
GO:1990404	NAD+-protein ADP-ribosyltransferase activity	3/689	23/20758	0.03936	0.3552	0.3243	3	0.004354
GO:0008429	phosphatidylethanolamine binding	2/689	10/20758	0.04149	0.3552	0.3243	2	0.002903
GO:0015279	store-operated calcium channel activity	2/689	10/20758	0.04149	0.3552	0.3243	2	0.002903
GO:0017002	activin receptor activity	2/689	10/20758	0.04149	0.3552	0.3243	2	0.002903
GO:0050656	3'-phosphoadenosine 5'-phosphosulfate binding	2/689	10/20758	0.04149	0.3552	0.3243	2	0.002903
GO:0052743	inositol tetrakisphosphate phosphatase activity	2/689	10/20758	0.04149	0.3552	0.3243	2	0.002903
GO:0071949	FAD binding	4/689	40/20758	0.04282	0.3594	0.3281	4	0.005806
GO:0016791	phosphatase activity	16/689	300/20758	0.04322	0.3594	0.3281	16	0.02322
GO:0008143	poly(A) binding	3/689	24/20758	0.04391	0.3594	0.3281	3	0.004354
GO:0015035	protein-disulfide reductase activity	4/689	41/20758	0.04625	0.3594	0.3281	4	0.005806

[1] “”

These plots show connections among categories:

Enrichment map. Categories are connected by genes in common. Dot size indicates number of genes, dot color indicates adjusted p value.

Gene-concept network. Categories (brown dots) are linked by genes in common (gray dots). The size of category dots indicates gene count.

4.1.0.2 Annotation group: BP (Biological Process)

Barplot for enriched categories. Values on top have lower p values.

The category with lowest p value is negative regulation of defense response to virus by host (1.933222e-07), and the highest (among the lowest 10) is positive regulation by symbiont of entry into host (0.0005179149). The ratio is 2679.024, i.e., they differ in 3 orders of magnitude.

Click to show/hide table with 100 rows for categories with the lowest p value.

ID	Description	GeneRatio	BgRatio	pvalue	p.adjust	qvalue	Count	GeneRatioCalc
GO:0050689	negative regulation of defense response to virus by host	8/673	10/21069	4.425e-11	1.933e-07	1.774e-07	8	0.01189
GO:0045655	regulation of monocyte differentiation	10/673	27/21069	5.341e-09	1.167e-05	1.07e-05	10	0.01486
GO:0010975	regulation of neuron projection development	40/673	468/21069	1.827e-08	2.661e-05	2.441e-05	40	0.05944
GO:0010804	negative regulation of tumor necrosis factor-mediated signaling pathway	11/673	41/21069	4.297e-08	4.693e-05	4.306e-05	11	0.01634
GO:0030224	monocyte differentiation	11/673	43/21069	7.381e-08	6.449e-05	5.917e-05	11	0.01634
GO:0045657	positive regulation of monocyte differentiation	7/673	15/21069	1.693e-07	0.0001233	0.0001131	7	0.0104
GO:0010803	regulation of tumor necrosis factor-mediated signaling pathway	13/673	78/21069	1.049e-06	0.0005179	0.0004752	13	0.01932
GO:0050687	negative regulation of defense response to virus	9/673	35/21069	1.101e-06	0.0005179	0.0004752	9	0.01337
GO:0046598	positive regulation of viral entry into host cell	7/673	19/21069	1.185e-06	0.0005179	0.0004752	7	0.0104
GO:0075294	positive regulation by symbiont of entry into host	7/673	19/21069	1.185e-06	0.0005179	0.0004752	7	0.0104
GO:0002842	positive regulation of T cell mediated immune response to tumor cell	6/673	13/21069	1.472e-06	0.0005845	0.0005363	6	0.008915
GO:0019835	cytolysis	9/673	37/21069	1.831e-06	0.0006394	0.0005867	9	0.01337
GO:0050770	regulation of axonogenesis	19/673	168/21069	1.903e-06	0.0006394	0.0005867	19	0.02823
GO:0002491	antigen processing and presentation of endogenous peptide antigen via MHC class II	6/673	14/21069	2.506e-06	0.000782	0.0007175	6	0.008915
GO:0001960	negative regulation of cytokine-mediated signaling pathway	14/673	105/21069	6.317e-06	0.001727	0.001585	14	0.0208
GO:0002840	regulation of T cell mediated immune response to tumor cell	6/673	16/21069	6.326e-06	0.001727	0.001585	6	0.008915
GO:0032088	negative regulation of NF-kappaB transcription factor activity	15/673	121/21069	7.403e-06	0.001903	0.001746	15	0.02229
GO:0002469	myeloid dendritic cell antigen processing and presentation	6/673	17/21069	9.513e-06	0.002187	0.002007	6	0.008915
GO:0007158	neuron cell-cell adhesion	6/673	17/21069	9.513e-06	0.002187	0.002007	6	0.008915
GO:0060761	negative regulation of response to cytokine stimulus	14/673	110/21069	1.092e-05	0.002386	0.002189	14	0.0208
GO:0051056	regulation of small GTPase mediated signal transduction	27/673	343/21069	1.714e-05	0.003567	0.003272	27	0.04012
GO:0032829	regulation of CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation	6/673	19/21069	1.975e-05	0.003751	0.003441	6	0.008915
GO:0032831	positive regulation of CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation	6/673	19/21069	1.975e-05	0.003751	0.003441	6	0.008915
GO:1903902	positive regulation of viral life cycle	7/673	29/21069	2.779e-05	0.005059	0.004642	7	0.0104
GO:0043382	positive regulation of memory T cell differentiation	6/673	21/21069	3.739e-05	0.006535	0.005995	6	0.008915
GO:0046629	gamma-delta T cell activation	8/673	41/21069	3.907e-05	0.006566	0.006024	8	0.01189
GO:0007409	axonogenesis	32/673	468/21069	4.929e-05	0.007286	0.006685	32	0.04755
GO:0002361	CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation	6/673	22/21069	5.003e-05	0.007286	0.006685	6	0.008915
GO:0002836	positive regulation of response to tumor cell	6/673	22/21069	5.003e-05	0.007286	0.006685	6	0.008915
GO:0002839	positive regulation of immune response to tumor cell	6/673	22/21069	5.003e-05	0.007286	0.006685	6	0.008915
GO:0002424	T cell mediated immune response to tumor cell	6/673	24/21069	8.546e-05	0.01131	0.01038	6	0.008915
GO:0021756	striatum development	6/673	24/21069	8.546e-05	0.01131	0.01038	6	0.008915
GO:0043380	regulation of memory T cell differentiation	6/673	24/21069	8.546e-05	0.01131	0.01038	6	0.008915
GO:0071875	adrenergic receptor signaling pathway	7/673	35/21069	0.0001014	0.01303	0.01195	7	0.0104
GO:0043379	memory T cell differentiation	6/673	25/21069	0.0001094	0.01335	0.01225	6	0.008915
GO:0009595	detection of biotic stimulus	9/673	60/21069	0.0001131	0.01335	0.01225	9	0.01337
GO:0045332	phospholipid translocation	9/673	60/21069	0.0001131	0.01335	0.01225	9	0.01337
GO:0098581	detection of external biotic stimulus	8/673	48/21069	0.0001268	0.01457	0.01337	8	0.01189
GO:0090715	immunological memory formation process	6/673	26/21069	0.0001384	0.01551	0.01423	6	0.008915
GO:0002429	immune response-activating cell surface receptor signaling pathway	27/673	390/21069	0.0001534	0.01634	0.01499	27	0.04012
GO:0002757	immune response-activating signal transduction	27/673	390/21069	0.0001534	0.01634	0.01499	27	0.04012
GO:0008038	neuron recognition	8/673	50/21069	0.0001705	0.01725	0.01582	8	0.01189
GO:0002837	regulation of immune response to tumor cell	6/673	27/21069	0.0001732	0.01725	0.01582	6	0.008915
GO:0051262	protein tetramerization	12/673	108/21069	0.0001737	0.01725	0.01582	12	0.01783
GO:0034612	response to tumor necrosis factor	23/673	313/21069	0.0001973	0.01915	0.01757	23	0.03418
GO:0098543	detection of other organism	7/673	39/21069	0.0002076	0.01953	0.01792	7	0.0104
GO:0034204	lipid translocation	9/673	65/21069	0.0002122	0.01953	0.01792	9	0.01337
GO:0002834	regulation of response to tumor cell	6/673	28/21069	0.0002145	0.01953	0.01792	6	0.008915
GO:0042093	T-helper cell differentiation	10/673	80/21069	0.0002271	0.02025	0.01858	10	0.01486
GO:0034329	cell junction assembly	30/673	468/21069	0.0002592	0.02265	0.02078	30	0.04458
GO:0043280	positive regulation of cysteine-type endopeptidase activity involved in apoptotic process	14/673	147/21069	0.0002686	0.02301	0.02111	14	0.0208
GO:0002294	CD4-positive, alpha-beta T cell differentiation involved in immune response	10/673	82/21069	0.0002787	0.02342	0.02149	10	0.01486
GO:0002287	alpha-beta T cell activation involved in immune response	10/673	83/21069	0.000308	0.02455	0.02252	10	0.01486
GO:0002293	alpha-beta T cell differentiation involved in immune response	10/673	83/21069	0.000308	0.02455	0.02252	10	0.01486
GO:0002468	dendritic cell antigen processing and presentation	6/673	30/21069	0.0003203	0.02455	0.02252	6	0.008915
GO:0021544	subpallium development	6/673	30/21069	0.0003203	0.02455	0.02252	6	0.008915
GO:0090713	immunological memory process	6/673	30/21069	0.0003203	0.02455	0.02252	6	0.008915
GO:0002761	regulation of myeloid leukocyte differentiation	14/673	150/21069	0.0003309	0.02482	0.02277	14	0.0208
GO:0050691	regulation of defense response to virus by host	8/673	55/21069	0.0003361	0.02482	0.02277	8	0.01189
GO:0071625	vocalization behavior	5/673	20/21069	0.0003408	0.02482	0.02277	5	0.007429
GO:0031589	cell-substrate adhesion	27/673	411/21069	0.0003542	0.02498	0.02292	27	0.04012
GO:0007605	sensory perception of sound	15/673	169/21069	0.0003545	0.02498	0.02292	15	0.02229
GO:0007411	axon guidance	19/673	248/21069	0.0004127	0.02762	0.02534	19	0.02823
GO:0097105	presynaptic membrane assembly	4/673	12/21069	0.0004162	0.02762	0.02534	4	0.005944
GO:0071709	membrane assembly	9/673	71/21069	0.0004172	0.02762	0.02534	9	0.01337
GO:0097035	regulation of membrane lipid distribution	9/673	71/21069	0.0004172	0.02762	0.02534	9	0.01337
GO:0097485	neuron projection guidance	19/673	249/21069	0.0004338	0.02829	0.02596	19	0.02823
GO:0050905	neuromuscular process	15/673	173/21069	0.0004548	0.02922	0.02681	15	0.02229
GO:0035774	positive regulation of insulin secretion involved in cellular response to glucose stimulus	6/673	32/21069	0.000463	0.02931	0.0269	6	0.008915
GO:0030225	macrophage differentiation	8/673	58/21069	0.0004866	0.03037	0.02786	8	0.01189
GO:0098742	cell-cell adhesion via plasma-membrane adhesion molecules	21/673	293/21069	0.0005114	0.03147	0.02887	21	0.0312
GO:0002347	response to tumor cell	8/673	59/21069	0.0005474	0.03322	0.03047	8	0.01189
GO:0051549	positive regulation of keratinocyte migration	4/673	13/21069	0.000586	0.0346	0.03174	4	0.005944
GO:0097090	presynaptic membrane organization	4/673	13/21069	0.000586	0.0346	0.03174	4	0.005944
GO:0033209	tumor necrosis factor-mediated signaling pathway	13/673	141/21069	0.0006	0.03485	0.03197	13	0.01932
GO:0050954	sensory perception of mechanical stimulus	16/673	197/21069	0.000614	0.03485	0.03197	16	0.02377
GO:0035176	social behavior	8/673	60/21069	0.0006142	0.03485	0.03197	8	0.01189
GO:0044091	membrane biogenesis	9/673	75/21069	0.0006285	0.0352	0.0323	9	0.01337
GO:0002292	T cell differentiation involved in immune response	10/673	91/21069	0.000648	0.03584	0.03288	10	0.01486
GO:0060119	inner ear receptor cell development	7/673	47/21069	0.0006805	0.03717	0.0341	7	0.0104
GO:0001959	regulation of cytokine-mediated signaling pathway	16/673	201/21069	0.0007631	0.04055	0.0372	16	0.02377
GO:0051703	biological process involved in intraspecies interaction between organisms	8/673	62/21069	0.0007676	0.04055	0.0372	8	0.01189
GO:0002253	activation of immune response	30/673	500/21069	0.0007703	0.04055	0.0372	30	0.04458
GO:0006855	xenobiotic transmembrane transport	4/673	14/21069	0.0007997	0.04159	0.03816	4	0.005944
GO:0060117	auditory receptor cell development	5/673	24/21069	0.0008405	0.0432	0.03964	5	0.007429
GO:0016045	detection of bacterium	6/673	36/21069	0.000893	0.04517	0.04144	6	0.008915
GO:2001056	positive regulation of cysteine-type endopeptidase activity	14/673	166/21069	0.0009137	0.04517	0.04144	14	0.0208
GO:0015914	phospholipid transport	11/673	112/21069	0.0009197	0.04517	0.04144	11	0.01634
GO:0086003	cardiac muscle cell contraction	9/673	79/21069	0.0009201	0.04517	0.04144	9	0.01337
GO:0032535	regulation of cellular component size	25/673	394/21069	0.0009489	0.04606	0.04226	25	0.03715
GO:0002862	negative regulation of inflammatory response to antigenic stimulus	6/673	37/21069	0.001037	0.04981	0.0457	6	0.008915
GO:0060113	inner ear receptor cell differentiation	8/673	65/21069	0.001054	0.04994	0.04582	8	0.01189
GO:1902043	positive regulation of extrinsic apoptotic signaling pathway via death domain receptors	4/673	15/21069	0.001063	0.04994	0.04582	4	0.005944
GO:0006869	lipid transport	28/673	467/21069	0.00115	0.05323	0.04884	28	0.0416
GO:0032731	positive regulation of interleukin-1 beta production	10/673	98/21069	0.001158	0.05323	0.04884	10	0.01486
GO:0007162	negative regulation of cell adhesion	24/673	378/21069	0.001179	0.05365	0.04922	24	0.03566
GO:0002768	immune response-regulating cell surface receptor signaling pathway	28/673	470/21069	0.001265	0.05698	0.05228	28	0.0416
GO:0043367	CD4-positive, alpha-beta T cell differentiation	10/673	100/21069	0.001352	0.06026	0.05529	10	0.01486
GO:0051547	regulation of keratinocyte migration	4/673	16/21069	0.001382	0.06069	0.05569	4	0.005944
GO:0051960	regulation of nervous system development	29/673	496/21069	0.001389	0.06069	0.05569	29	0.04309

[1] “”

These plots show connections among categories:

Enrichment map. Categories are connected by genes in common. Dot size indicates number of genes, dot color indicates adjusted p value.

Gene-concept network. Categories (brown dots) are linked by genes in common (gray dots). The size of category dots indicates gene count.

4.1.0.3 Annotation group: CC (Cellular Component)

Barplot for enriched categories. Values on top have lower p values.

The category with lowest p value is dystrophin-associated glycoprotein complex (0.0005246208), and the highest (among the lowest 10) is actin-based cell projection (0.009175939). The ratio is 17.49061, i.e., they differ in 1 orders of magnitude.

Click to show/hide table with 100 rows for categories with the lowest p value.

ID	Description	GeneRatio	BgRatio	pvalue	p.adjust	qvalue	Count	GeneRatioCalc
GO:0016010	dystrophin-associated glycoprotein complex	7/707	20/22283	1.698e-06	0.0005246	0.0004368	7	0.009901
GO:0005938	cell cortex	28/707	326/22283	2.049e-06	0.0005246	0.0004368	28	0.0396
GO:0090665	glycoprotein complex	7/707	25/22283	9.169e-06	0.001565	0.001303	7	0.009901
GO:1990351	transporter complex	32/707	447/22283	1.796e-05	0.001873	0.00156	32	0.04526
GO:0042383	sarcolemma	16/707	147/22283	1.829e-05	0.001873	0.00156	16	0.02263
GO:0034702	ion channel complex	25/707	323/22283	4.162e-05	0.003551	0.002957	25	0.03536
GO:1990531	phospholipid-translocating ATPase complex	5/707	14/22283	5.001e-05	0.003658	0.003046	5	0.007072
GO:0005802	trans-Golgi network	25/707	333/22283	6.825e-05	0.004368	0.003637	25	0.03536
GO:0098978	glutamatergic synapse	25/707	354/22283	0.0001786	0.009176	0.00764	25	0.03536
GO:0098858	actin-based cell projection	20/707	253/22283	0.0001792	0.009176	0.00764	20	0.02829
GO:0034703	cation channel complex	19/707	236/22283	0.0002041	0.009498	0.007909	19	0.02687
GO:0032421	stereocilium bundle	9/707	66/22283	0.0002277	0.009713	0.008088	9	0.01273
GO:0032420	stereocilium	8/707	57/22283	0.0004131	0.0146	0.01216	8	0.01132
GO:0016342	catenin complex	6/707	32/22283	0.0004471	0.0146	0.01216	6	0.008487
GO:0001772	immunological synapse	8/707	58/22283	0.000466	0.0146	0.01216	8	0.01132
GO:1902495	transmembrane transporter complex	27/707	421/22283	0.0004674	0.0146	0.01216	27	0.03819
GO:0031902	late endosome membrane	16/707	194/22283	0.0004847	0.0146	0.01216	16	0.02263
GO:0019897	extrinsic component of plasma membrane	15/707	180/22283	0.0006457	0.01837	0.01529	15	0.02122
GO:0034705	potassium channel complex	10/707	94/22283	0.0007967	0.02147	0.01788	10	0.01414
GO:0005770	late endosome	22/707	332/22283	0.0009948	0.02547	0.0212	22	0.03112
GO:0005604	basement membrane	10/707	99/22283	0.001192	0.02907	0.0242	10	0.01414
GO:0098687	chromosomal region	26/707	428/22283	0.001296	0.03016	0.02511	26	0.03678
GO:0098685	Schaffer collateral - CA1 synapse	9/707	84/22283	0.001367	0.03043	0.02534	9	0.01273
GO:0031256	leading edge membrane	15/707	196/22283	0.001533	0.0327	0.02722	15	0.02122
GO:0044304	main axon	8/707	74/22283	0.002353	0.0482	0.04013	8	0.01132
GO:0030175	filopodium	11/707	128/22283	0.00257	0.05061	0.04214	11	0.01556
GO:0098984	neuron to neuron synapse	23/707	383/22283	0.002772	0.05256	0.04376	23	0.03253
GO:0097060	synaptic membrane	24/707	408/22283	0.002959	0.0541	0.04505	24	0.03395
GO:0005828	kinetochore microtubule	4/707	20/22283	0.003246	0.0573	0.04771	4	0.005658
GO:0098791	Golgi apparatus subcompartment	27/707	484/22283	0.003501	0.05948	0.04953	27	0.03819
GO:1990752	microtubule end	5/707	33/22283	0.003601	0.05948	0.04953	5	0.007072
GO:0036157	outer dynein arm	3/707	11/22283	0.004337	0.06939	0.05778	3	0.004243
GO:0099240	intrinsic component of synaptic membrane	13/707	179/22283	0.004791	0.07433	0.06189	13	0.01839
GO:0005643	nuclear pore	9/707	102/22283	0.005152	0.07563	0.06297	9	0.01273
GO:0008076	voltage-gated potassium channel complex	8/707	84/22283	0.00517	0.07563	0.06297	8	0.01132
GO:0030673	axolemma	4/707	23/22283	0.005502	0.07825	0.06515	4	0.005658
GO:0031252	cell leading edge	25/707	457/22283	0.006172	0.08317	0.06925	25	0.03536
GO:0032589	neuron projection membrane	7/707	69/22283	0.006173	0.08317	0.06925	7	0.009901
GO:0099061	integral component of postsynaptic density membrane	6/707	53/22283	0.006459	0.08434	0.07023	6	0.008487
GO:0031253	cell projection membrane	22/707	388/22283	0.006589	0.08434	0.07023	22	0.03112
GO:0001917	photoreceptor inner segment	7/707	72/22283	0.007772	0.09507	0.07916	7	0.009901
GO:0016528	sarcoplasm	8/707	90/22283	0.007799	0.09507	0.07916	8	0.01132
GO:0099146	intrinsic component of postsynaptic density membrane	6/707	56/22283	0.008436	0.1005	0.08364	6	0.008487
GO:0000781	chromosome, telomeric region	13/707	193/22283	0.008848	0.1024	0.08522	13	0.01839
GO:0016529	sarcoplasmic reticulum	7/707	74/22283	0.008996	0.1024	0.08522	7	0.009901
GO:0032279	asymmetric synapse	20/707	357/22283	0.01052	0.1171	0.09747	20	0.02829
GO:0097730	non-motile cilium	12/707	178/22283	0.01155	0.1258	0.1048	12	0.01697
GO:0034704	calcium channel complex	7/707	78/22283	0.01186	0.1265	0.1053	7	0.009901
GO:0030016	myofibril	15/707	246/22283	0.01232	0.1287	0.1072	15	0.02122
GO:0098831	presynaptic active zone cytoplasmic component	3/707	16/22283	0.01308	0.1308	0.1089	3	0.004243
GO:0099060	integral component of postsynaptic specialization membrane	7/707	80/22283	0.01351	0.1308	0.1089	7	0.009901
GO:0042734	presynaptic membrane	11/707	161/22283	0.01389	0.1308	0.1089	11	0.01556
GO:0097731	9+0 non-motile cilium	10/707	140/22283	0.01393	0.1308	0.1089	10	0.01414
GO:0030017	sarcomere	14/707	227/22283	0.01395	0.1308	0.1089	14	0.0198
GO:0098839	postsynaptic density membrane	8/707	100/22283	0.01425	0.1308	0.1089	8	0.01132
GO:0030863	cortical cytoskeleton	9/707	120/22283	0.0143	0.1308	0.1089	9	0.01273
GO:0098688	parallel fiber to Purkinje cell synapse	3/707	17/22283	0.01552	0.1394	0.116	3	0.004243
GO:0098948	intrinsic component of postsynaptic specialization membrane	7/707	83/22283	0.01629	0.1424	0.1186	7	0.009901
GO:0099572	postsynaptic specialization	20/707	374/22283	0.0167	0.1424	0.1186	20	0.02829
GO:0032588	trans-Golgi network membrane	11/707	166/22283	0.01709	0.1424	0.1186	11	0.01556
GO:0043292	contractile fiber	15/707	256/22283	0.01712	0.1424	0.1186	15	0.02122
GO:0014069	postsynaptic density	19/707	351/22283	0.01725	0.1424	0.1186	19	0.02687
GO:0099699	integral component of synaptic membrane	11/707	168/22283	0.01851	0.1504	0.1252	11	0.01556
GO:0032587	ruffle membrane	8/707	106/22283	0.01962	0.157	0.1307	8	0.01132
GO:0001726	ruffle	12/707	194/22283	0.02135	0.1641	0.1366	12	0.01697
GO:0031965	nuclear membrane	18/707	335/22283	0.02144	0.1641	0.1366	18	0.02546
GO:0098862	cluster of actin-based cell projections	11/707	172/22283	0.02162	0.1641	0.1366	11	0.01556
GO:0098982	GABA-ergic synapse	7/707	88/22283	0.02179	0.1641	0.1366	7	0.009901
GO:0098686	hippocampal mossy fiber to CA3 synapse	4/707	35/22283	0.02414	0.1774	0.1477	4	0.005658
GO:0033276	transcription factor TFTC complex	3/707	20/22283	0.02425	0.1774	0.1477	3	0.004243
GO:0031594	neuromuscular junction	6/707	71/22283	0.02507	0.1782	0.1484	6	0.008487
GO:0035869	ciliary transition zone	6/707	71/22283	0.02507	0.1782	0.1484	6	0.008487
GO:0005790	smooth endoplasmic reticulum	4/707	36/22283	0.0265	0.1858	0.1547	4	0.005658
GO:0045211	postsynaptic membrane	16/707	296/22283	0.02759	0.1887	0.1571	16	0.02263
GO:0032426	stereocilium tip	3/707	21/22283	0.02764	0.1887	0.1571	3	0.004243
GO:0031672	A band	4/707	37/22283	0.02899	0.1953	0.1626	4	0.005658
GO:0099023	vesicle tethering complex	6/707	74/22283	0.02998	0.1993	0.166	6	0.008487
GO:0033162	melanosome membrane	3/707	22/22283	0.03127	0.2001	0.1666	3	0.004243
GO:0045009	chitosome	3/707	22/22283	0.03127	0.2001	0.1666	3	0.004243
GO:0090741	pigment granule membrane	3/707	22/22283	0.03127	0.2001	0.1666	3	0.004243
GO:0032154	cleavage furrow	5/707	56/22283	0.03206	0.2026	0.1687	5	0.007072
GO:0030018	Z disc	9/707	139/22283	0.03331	0.208	0.1732	9	0.01273
GO:0099738	cell cortex region	4/707	39/22283	0.03437	0.2116	0.1762	4	0.005658
GO:0000242	pericentriolar material	3/707	23/22283	0.03513	0.2116	0.1762	3	0.004243
GO:0035371	microtubule plus-end	3/707	23/22283	0.03513	0.2116	0.1762	3	0.004243
GO:0016459	myosin complex	5/707	58/22283	0.03655	0.2157	0.1796	5	0.007072
GO:0032153	cell division site	6/707	78/22283	0.03744	0.2157	0.1796	6	0.008487
GO:0032437	cuticular plate	2/707	10/22283	0.03821	0.2157	0.1796	2	0.002829
GO:0098981	cholinergic synapse	2/707	10/22283	0.03821	0.2157	0.1796	2	0.002829
GO:0099569	presynaptic cytoskeleton	2/707	10/22283	0.03821	0.2157	0.1796	2	0.002829
GO:0005858	axonemal dynein complex	3/707	24/22283	0.03923	0.2157	0.1796	3	0.004243
GO:0031430	M band	3/707	24/22283	0.03923	0.2157	0.1796	3	0.004243
GO:0032433	filopodium tip	3/707	24/22283	0.03923	0.2157	0.1796	3	0.004243
GO:0019898	extrinsic component of membrane	17/707	335/22283	0.03961	0.2157	0.1796	17	0.02405
GO:0033017	sarcoplasmic reticulum membrane	4/707	41/22283	0.04029	0.2171	0.1808	4	0.005658
GO:0005819	spindle	22/707	465/22283	0.04171	0.2209	0.1839	22	0.03112
GO:0031233	intrinsic component of external side of plasma membrane	3/707	25/22283	0.04356	0.2209	0.1839	3	0.004243
GO:0045171	intercellular bridge	7/707	102/22283	0.04369	0.2209	0.1839	7	0.009901
GO:0000276	mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)	2/707	11/22283	0.04573	0.2209	0.1839	2	0.002829
GO:0000815	ESCRT III complex	2/707	11/22283	0.04573	0.2209	0.1839	2	0.002829

[1] “”

These plots show connections among categories:

Enrichment map. Categories are connected by genes in common. Dot size indicates number of genes, dot color indicates adjusted p value.

Gene-concept network. Categories (brown dots) are linked by genes in common (gray dots). The size of category dots indicates gene count.

4.2 Disease Ontology

No significant results were found in DO.

4.3 Network of Cancer Genes

Here it is a barplot of most significantly enriched NCG categories.

Barplot for enriched categories. Values on top have lower p values.

The most significant category was pancreatic_ductal_adenocarcinoma.