Note: Insertion ids mentioned in this report are for internal use (not linked to any database) and will change if the pipeline is re-run.

1 General figures

1.1 Filtering criteria

1.1.1 Lax criterion

Note: A “unique” insertion is the merged result after the allele-aware merging from both callers for each patient, and then merged across patients. If we were working with SNPs, a “unique” SNP would be, rs123, for example, defined by its position and alternative(s) allele(s). A unique insertion is defined by its position, length, and inserted sequence.

The analysis has identified:

  • 2 798 unique TE insertions, which amount to a total of 5 152 occurrences among all samples.
  • With any insertion appearing on 1.8 ± 0.37 samples (median of 2 occurrences/insertion).
  • The average insertion count per case is 2 576 ± 31.1.

1.1.2 Strict criterion

The stringent criterion (both callers) has left:

  • 2 057 TE insertions.
  • A total of 3 930 calls across cases.
  • A mean prevalence of 1.9 ± 0.29.
  • The median prevalence is 2.
  • Each sample carries an average of 1 965 ± 7.1 TE insertions.

1.2 Genotyping

  • 146 unique insertions that passed the stringent filtering. (7.1% of the total unique insertions), had at least one occurrence genotyped as 0/0.

  • These amount to 197 total count (5.0% of filter-passing occurrences).

  • 103 of these unique insertions were genotyped as 0/0 for all their occurrences, amounting to 154 insertion counts.

  • Of these fully wrong calls, 52 were only found on a single patient each (50.5% of the 103).

  • The strict criteria missed calls for 77 unique insertions (3.7%).

  • These mean a total of 77 occurrences, out of 3 930 calls that passed the stringent filter.

  • 77 unique insertions had more false negative occurrences than positive ones.

The discrepancies between genotyping and the lax filtering is also summarized in the table below.

Note: for true/false poitives/negatives, the genotypes have considered the gold standard.

Criterion

Unique INS with false positives (%)

Total false positives (%)

Unique INS (total) with all false positives

Unique INS with false negatives (%)

Total false negatives (Total positives)

Unique INS with more false negatives than positives

Strict

146
( 7.1)

197
(5.0)

103
(154)

77
(3.7)

77
(3 930)

77

Lax

353
(12.6)

465
(9.0)

289
(401)

0
(0.0)

0
(5 152)

0

The next sections only take into account insertions that passed the strict criterion on at least one sample, and that were not genotyped as 0/0 on all samples.

1.2.1 Allele frequency

1.2.2 Ubiquitous TE insertions

1.2.2.1 Ubiquitous TE insertions

568 TE insertions were found on all cases in homozygosis.

Click to show table with 568 rows.

Position

Length

Type

AF

CP068277.2:6 326 450

176

SINE (AluYb8)

1

CP068277.2:20 992 774

315

SINE (AluYa5)

1

CP068277.2:37 641 313

47

Retroposon (SVA_F)

1

CP068277.2:42 148 108

312

SINE (AluYa5)

1

CP068277.2:46 119 444

47

Retroposon (SVA_F)

1

CP068277.2:48 071 779

170

Retroposon (SVA_A)

1

CP068277.2:65 547 882

321

SINE (AluY)

1

CP068277.2:78 774 660

319

SINE (AluYi6)

1

CP068277.2:79 487 048

317

SINE (AluYa5)

1

CP068277.2:80 540 755

65

LINE (L1P2)

1

CP068277.2:81 683 953

322

SINE (AluYb8)

1

CP068277.2:97 099 968

324

SINE (AluYk3)

1

CP068277.2:104 553 877

318

SINE (AluYa5)

1

CP068277.2:111 310 361

61

LINE (L1P3)

1

CP068277.2:115 265 714

279

SINE (AluYa5)

1

CP068277.2:117 439 865

79

Retroposon (SVA_A)

1

CP068277.2:149 905 532

87

Retroposon (SVA_A)

1

CP068277.2:160 560 569

359

Retroposon (SVA_A)

1

CP068277.2:166 450 102

62

LTR (MLT1C2)

1

CP068277.2:168 747 175

42

LTR (PABL_A)

1

CP068277.2:178 877 824

352

SINE (AluYb9)

1

CP068277.2:180 243 610

320

SINE (AluYa5)

1

CP068277.2:190 958 084

324

SINE (AluYa5)

1

CP068277.2:192 243 097

39

LTR (LTR12D)

1

CP068277.2:194 052 174

328

SINE (AluYa5)

1

CP068277.2:199 161 462

45

Retroposon (SVA_F)

1

CP068277.2:205 230 886

313

SINE (AluYa5)

1

CP068277.2:211 436 465

39

Retroposon (SVA_E)

1

CP068277.2:211 713 734

84

SINE (AluSx)

1

CP068277.2:216 822 048

301

SINE (AluYb9)

1

CP068277.2:221 931 096

328

SINE (AluYb8)

1

CP068277.2:244 330 607

115

SINE (AluYa5)

1

CP068276.2:1 198 288

306

SINE (AluY)

1

CP068276.2:1 468 423

329

SINE (AluY)

1

CP068276.2:10 932 624

145

Retroposon (SVA_F)

1

CP068276.2:13 196 975

46

LTR (HERVH-int)

1

CP068276.2:13 955 735

74

LTR (MER57-int)

1

CP068276.2:20 500 541

307

SINE (AluYa5)

1

CP068276.2:34 814 746

241

SINE (AluYa5)

1

CP068276.2:42 610 850

302

Retroposon (SVA_F)

1

CP068276.2:44 604 010

316

SINE (AluYa5)

1

CP068276.2:46 682 545

49

SINE (Alu)

1

CP068276.2:50 018 018

132

SINE (AluSc8)

1

CP068276.2:54 440 636

320

SINE (AluY)

1

CP068276.2:54 460 543

248

SINE (AluY)

1

CP068276.2:65 116 309

304

SINE (AluYc)

1

CP068276.2:76 039 744

233

SINE (AluYb8)

1

CP068276.2:80 542 014

269

SINE (AluYa5)

1

CP068276.2:99 438 516

45

LINE (L1P1)

1

CP068276.2:100 904 185

61

LINE (L1MD)

1

CP068276.2:102 198 725

315

SINE (AluYa5)

1

CP068276.2:106 297 452

316

SINE (AluYe5)

1

CP068276.2:107 771 785

320

SINE (AluYa5)

1

CP068276.2:111 709 562

329

SINE (AluYa5)

1

CP068276.2:123 569 366

133

SINE (AluSp)

1

CP068276.2:123 667 376

330

SINE (AluYb8)

1

CP068276.2:133 554 576

319

SINE (AluY)

1

CP068276.2:137 865 383

60

SINE (AluYb8)

1

CP068276.2:169 505 778

321

SINE (AluYb8)

1

CP068276.2:170 052 490

47

Retroposon (SVA_F)

1

CP068276.2:173 773 579

311

SINE (AluYa5)

1

CP068276.2:174 574 715

172

Retroposon (SVA_A)

1

CP068276.2:174 574 791

174

Retroposon (SVA_A)

1

CP068276.2:174 575 385

40

Retroposon (SVA_F)

1

CP068276.2:175 359 957

318

SINE (AluYa5)

1

CP068276.2:177 936 293

333

SINE (AluYb8)

1

CP068276.2:177 969 023

340

SINE (AluYb8)

1

CP068276.2:184 038 383

33

LINE (L1P4)

1

CP068276.2:191 887 362

477

Retroposon (SVA_F)

1

CP068276.2:192 183 561

317

SINE (AluY)

1

CP068276.2:192 186 024

322

SINE (AluYa5)

1

CP068276.2:198 382 298

311

SINE (AluYa5)

1

CP068276.2:198 513 690

137

SINE (AluSg)

1

CP068276.2:200 963 887

44

SINE (FRAM)

1

CP068276.2:201 167 229

46

Retroposon (SVA_F)

1

CP068276.2:215 319 683

76

Retroposon (SVA_F)

1

CP068276.2:215 369 783

157

SINE (AluYb9)

1

CP068276.2:216 169 155

326

SINE (AluYb8)

1

CP068276.2:216 174 633

132

SINE (AluJo)

1

CP068276.2:217 798 533

304

SINE (AluYb8)

1

CP068276.2:241 341 649

103

LTR (LTR10F)

1

CP068275.2:2 584 962

314

SINE (AluYa5)

1

CP068275.2:12 308 635

308

SINE (AluYa5)

1

CP068275.2:17 692 738

322

SINE (AluYa5)

1

CP068275.2:17 706 756

146

Retroposon (SVA_F)

1

CP068275.2:20 459 977

66

LTR (LTR25-int)

1

CP068275.2:25 252 739

71

LINE (L1M2)

1

CP068275.2:28 128 297

324

SINE (AluYb8)

1

CP068275.2:29 581 547

321

SINE (AluYb8)

1

CP068275.2:32 376 221

148

SINE (AluJb)

1

CP068275.2:32 897 377

95

LINE (L1M4)

1

CP068275.2:49 529 100

37

SINE (Alu)

1

CP068275.2:50 871 697

331

SINE (AluY)

1

CP068275.2:51 280 054

77

Retroposon (SVA_D)

1

CP068275.2:58 327 251

43

Retroposon (SVA_B)

1

CP068275.2:65 941 604

35

LINE (L1PA6)

1

CP068275.2:66 961 938

131

LINE (L1P3)

1

CP068275.2:67 489 000

97

Retroposon (SVA_F)

1

CP068275.2:82 376 966

107

LTR (MER4E1)

1

CP068275.2:87 545 867

279

SINE (AluYa5)

1

CP068275.2:98 099 916

327

SINE (AluYb8)

1

CP068275.2:114 926 706

49

LINE (L1P3)

1

CP068275.2:124 033 267

47

Retroposon (SVA_F)

1

CP068275.2:132 084 525

47

Retroposon (SVA_F)

1

CP068275.2:132 210 422

306

SINE (AluYb8)

1

CP068275.2:136 876 080

57

LINE (L1MCa)

1

CP068275.2:146 222 567

314

SINE (AluYa5)

1

CP068275.2:152 911 714

303

SINE (AluY)

1

CP068275.2:169 427 751

340

SINE (AluYa5)

1

CP068275.2:169 455 669

312

SINE (AluY)

1

CP068275.2:174 782 688

118

LTR (LTR12C)

1

CP068275.2:177 480 228

321

SINE (AluYb8)

1

CP068275.2:181 196 484

329

SINE (AluYb8)

1

CP068275.2:189 692 114

77

Retroposon (SVA_F)

1

CP068274.2:544 007

160

Retroposon (SVA_D)

1

CP068274.2:1 306 582

317

SINE (AluYk2)

1

CP068274.2:1 318 269

132

SINE (AluJb)

1

CP068274.2:2 760 310

75

LINE (L2b)

1

CP068274.2:4 327 276

132

LINE (L1MB3)

1

CP068274.2:8 373 198

159

SINE (AluSc8)

1

CP068274.2:9 950 437

246

SINE (AluY)

1

CP068274.2:9 954 701

315

SINE (AluY)

1

CP068274.2:31 814 716

308

SINE (AluYg6)

1

CP068274.2:38 777 883

75

Retroposon (SVA_B)

1

CP068274.2:38 778 074

180

Retroposon (SVA_F)

1

CP068274.2:40 044 378

36

SINE (AluSx4)

1

CP068274.2:45 425 666

39

LTR (LTR12E)

1

CP068274.2:47 461 846

314

SINE (AluYb8)

1

CP068274.2:47 509 431

333

SINE (AluY)

1

CP068274.2:56 743 495

35

Retroposon (SVA_A)

1

CP068274.2:58 620 850

323

SINE (AluYb8)

1

CP068274.2:59 545 987

195

SINE (AluYc)

1

CP068274.2:70 824 821

73

Retroposon (SVA_A)

1

CP068274.2:73 581 961

186

LINE (L1PA2)

1

CP068274.2:85 588 188

303

SINE (AluY)

1

CP068274.2:88 719 288

308

SINE (AluYa5)

1

CP068274.2:88 913 506

72

LINE (L1HS)

1

CP068274.2:89 207 100

34

SINE (Alu)

1

CP068274.2:98 264 406

317

SINE (AluYb8)

1

CP068274.2:107 135 388

303

SINE (AluYa5)

1

CP068274.2:109 710 152

63

LINE (L1M4c)

1

CP068274.2:119 633 332

317

SINE (AluYa5)

1

CP068274.2:122 158 905

317

SINE (AluYa5)

1

CP068274.2:123 965 285

325

SINE (AluYb8)

1

CP068274.2:124 831 133

180

SINE (AluYc)

1

CP068274.2:137 323 693

306

SINE (AluY)

1

CP068274.2:137 531 575

327

SINE (AluYe5)

1

CP068274.2:145 008 457

48

LTR (THE1D)

1

CP068274.2:153 984 117

97

Retroposon (SVA_F)

1

CP068274.2:154 329 485

40

SINE (Alu)

1

CP068274.2:154 538 658

126

Retroposon (SVA_F)

1

CP068274.2:166 928 648

314

SINE (AluYb8)

1

CP068274.2:168 367 484

122

Retroposon (SVA_F)

1

CP068274.2:168 367 843

39

Retroposon (SVA_C)

1

CP068274.2:171 244 192

111

LTR (MER4A)

1

CP068274.2:173 524 232

36

Retroposon (SVA_D)

1

CP068274.2:173 865 119

316

SINE (AluYb8)

1

CP068274.2:177 630 266

311

SINE (AluYe5)

1

CP068274.2:184 287 164

225

Retroposon (SVA_F)

1

CP068274.2:186 157 093

179

LTR (HERVH-int)

1

CP068274.2:186 384 593

39

Retroposon (SVA_C)

1

CP068274.2:191 741 144

315

SINE (AluY)

1

CP068274.2:192 864 879

151

LINE (L1M4)

1

CP068273.2:1 499 358

314

SINE (AluY)

1

CP068273.2:1 857 114

310

SINE (AluYb8)

1

CP068273.2:4 000 765

319

SINE (AluYa5)

1

CP068273.2:16 635 829

43

SINE (Alu)

1

CP068273.2:16 655 697

310

SINE (AluYg6)

1

CP068273.2:24 017 957

285

SINE (AluY)

1

CP068273.2:25 758 140

221

LINE (L1P1)

1

CP068273.2:34 235 086

321

SINE (AluYa5)

1

CP068273.2:38 033 737

92

LTR (Harlequin-int)

1

CP068273.2:46 415 440

333

SINE (AluY)

1

CP068273.2:63 640 729

57

LINE (L1P1)

1

CP068273.2:66 799 023

345

Retroposon (SVA_F)

1

CP068273.2:77 294 344

48

Retroposon (SVA_F)

1

CP068273.2:78 760 230

285

SINE (AluYa5)

1

CP068273.2:98 972 628

23

LTR (LTR12D)

1

CP068273.2:103 260 583

40

LTR (LTR12E)

1

CP068273.2:114 448 514

78

LTR (LTR62)

1

CP068273.2:118 013 084

308

SINE (AluY)

1

CP068273.2:121 495 295

313

SINE (AluYa5)

1

CP068273.2:125 897 920

320

SINE (AluY)

1

CP068273.2:133 628 749

50

Retroposon (SVA_F)

1

CP068273.2:134 951 038

300

SINE (AluYa5)

1

CP068273.2:138 669 937

65

LTR (LTR12)

1

CP068273.2:139 924 858

295

SINE (AluSx)

1

CP068273.2:147 656 992

41

LINE (L1M2)

1

CP068273.2:150 072 540

323

SINE (AluYa5)

1

CP068273.2:159 694 188

322

SINE (AluYa5)

1

CP068273.2:159 818 649

314

SINE (AluYa5)

1

CP068273.2:163 339 537

314

SINE (AluY)

1

CP068273.2:180 746 045

172

SINE (AluY)

1

CP068273.2:181 314 056

266

LINE (L1P1)

1

CP068272.2:7 310 938

81

LTR (LTR12D)

1

CP068272.2:8 944 499

317

SINE (AluYg6)

1

CP068272.2:9 939 215

312

SINE (AluYa5)

1

CP068272.2:10 902 109

135

SINE (AluSz)

1

CP068272.2:13 394 505

329

SINE (AluYb8)

1

CP068272.2:18 218 651

309

SINE (AluYa5)

1

CP068272.2:19 027 502

323

SINE (AluYb9)

1

CP068272.2:19 295 205

236

SINE (AluYa5)

1

CP068272.2:21 225 613

78

SINE (AluYb8)

1

CP068272.2:28 879 239

100

SINE (AluYi6)

1

CP068272.2:30 339 365

38

Retroposon (SVA_C)

1

CP068272.2:30 680 491

159

LTR (LTR12C)

1

CP068272.2:32 628 076

314

SINE (AluYa5)

1

CP068272.2:38 788 684

46

Retroposon (SVA_F)

1

CP068272.2:41 265 665

320

SINE (AluYf1)

1

CP068272.2:43 757 249

316

SINE (AluYa5)

1

CP068272.2:53 584 806

282

SINE (AluY)

1

CP068272.2:62 724 632

132

SINE (AluSp)

1

CP068272.2:74 701 972

42

SINE (Alu)

1

CP068272.2:74 838 887

38

Retroposon (SVA_B)

1

CP068272.2:76 425 221

316

SINE (AluYa5)

1

CP068272.2:76 483 634

49

SINE (Alu)

1

CP068272.2:82 796 743

321

SINE (AluY)

1

CP068272.2:83 853 159

57

LINE (L1P1)

1

CP068272.2:84 185 928

312

SINE (AluYa5)

1

CP068272.2:86 651 704

331

SINE (AluY)

1

CP068272.2:97 741 692

322

SINE (AluYb8)

1

CP068272.2:103 685 614

315

SINE (AluYa5)

1

CP068272.2:105 950 363

311

SINE (AluY)

1

CP068272.2:107 085 594

53

DNA (MER58A)

1

CP068272.2:109 208 497

105

SINE (AluJb)

1

CP068272.2:115 951 897

105

SINE (AluSc)

1

CP068272.2:123 028 931

102

LINE (L2a)

1

CP068272.2:124 036 735

127

Retroposon (SVA_F)

1

CP068272.2:126 080 527

40

LTR (LTR12C)

1

CP068272.2:137 339 890

70

SINE (AluSg)

1

CP068272.2:138 121 232

277

SINE (AluYa5)

1

CP068272.2:138 607 851

30

SINE (Alu)

1

CP068272.2:155 567 174

274

SINE (AluY)

1

CP068272.2:159 090 611

38

LTR (LTR8)

1

CP068272.2:164 958 990

303

SINE (AluY)

1

CP068271.2:2 674 652

107

SINE (AluSq)

1

CP068271.2:4 506 976

47

Retroposon (SVA_B)

1

CP068271.2:7 023 835

58

LTR (HERVH-int)

1

CP068271.2:12 396 185

31

SINE (AluSg)

1

CP068271.2:15 262 062

60

LTR (MER89)

1

CP068271.2:20 804 211

47

Retroposon (SVA_F)

1

CP068271.2:23 192 907

51

LINE (L1MC)

1

CP068271.2:29 929 697

37

LTR (HERVH-int)

1

CP068271.2:39 867 656

331

SINE (AluYb8)

1

CP068271.2:45 911 340

323

SINE (AluYa5)

1

CP068271.2:48 018 072

323

SINE (AluYa5)

1

CP068271.2:52 200 515

315

SINE (AluYg6)

1

CP068271.2:54 800 608

60

SINE (Alu)

1

CP068271.2:55 943 911

304

SINE (AluY)

1

CP068271.2:56 334 427

321

SINE (AluYb8)

1

CP068271.2:57 541 048

323

SINE (AluYb8)

1

CP068271.2:64 353 162

77

LINE (L1HS)

1

CP068271.2:65 627 675

324

SINE (AluY)

1

CP068271.2:66 174 198

446

Retroposon (SVA_F)

1

CP068271.2:66 174 413

442

Retroposon (SVA_F)

1

CP068271.2:69 749 646

44

SINE (Alu)

1

CP068271.2:76 011 796

192

SINE (AluYa5)

1

CP068271.2:78 216 802

318

SINE (AluYa5)

1

CP068271.2:84 568 345

317

SINE (AluYg6)

1

CP068271.2:86 522 262

268

LINE (L1HS)

1

CP068271.2:96 385 565

327

SINE (AluY)

1

CP068271.2:98 495 109

242

SINE (AluYa5)

1

CP068271.2:98 998 843

187

SINE (AluYb9)

1

CP068271.2:109 361 785

120

SINE (AluY)

1

CP068271.2:110 968 118

326

SINE (AluYb8)

1

CP068271.2:112 163 030

96

LINE (L1HS)

1

CP068271.2:121 741 950

31

SINE (Alu)

1

CP068271.2:130 830 383

317

SINE (AluSx)

1

CP068271.2:132 541 792

144

SINE (AluJb)

1

CP068271.2:133 487 650

328

SINE (AluY)

1

CP068271.2:135 973 338

419

LINE (L1HS)

1

CP068271.2:137 801 343

329

SINE (AluYe5)

1

CP068271.2:138 459 440

311

SINE (AluYc)

1

CP068271.2:138 476 358

310

SINE (AluYa5)

1

CP068271.2:149 591 887

134

SINE (AluYk11)

1

CP068271.2:149 923 445

134

SINE (AluSz)

1

CP068271.2:150 461 890

47

Retroposon (SVA_F)

1

CP068271.2:152 200 515

52

LTR (LTR5_Hs)

1

CP068271.2:153 713 300

130

SINE (AluSx)

1

CP068270.2:1 867 928

44

SINE (Alu)

1

CP068270.2:4 117 692

328

SINE (AluYa5)

1

CP068270.2:4 348 133

94

LINE (L1HS)

1

CP068270.2:14 297 255

87

SINE (AluSq10)

1

CP068270.2:34 175 409

284

SINE (AluY)

1

CP068270.2:34 580 253

67

LINE (L1M3)

1

CP068270.2:41 686 990

334

SINE (AluYb8)

1

CP068270.2:51 522 000

311

SINE (AluYa5)

1

CP068270.2:51 532 738

48

Retroposon (SVA_F)

1

CP068270.2:51 604 351

118

LTR (LTR12C)

1

CP068270.2:54 436 680

313

SINE (AluYb8)

1

CP068270.2:55 866 231

315

SINE (AluYa5)

1

CP068270.2:58 587 319

330

SINE (AluY)

1

CP068270.2:60 716 533

315

SINE (AluYa5)

1

CP068270.2:72 074 693

329

SINE (AluYa5)

1

CP068270.2:87 184 808

320

SINE (AluYb8)

1

CP068270.2:90 822 117

47

Retroposon (SVA_F)

1

CP068270.2:102 018 473

39

Retroposon (SVA_E)

1

CP068270.2:121 797 875

317

SINE (AluY)

1

CP068270.2:132 282 389

312

SINE (AluY)

1

CP068270.2:132 464 747

323

SINE (AluY)

1

CP068270.2:132 610 630

39

LTR (LTR12E)

1

CP068270.2:135 985 556

112

LINE (L3)

1

CP068270.2:136 889 693

39

LTR (HERVH-int)

1

CP068269.2:2 353 936

315

SINE (AluY)

1

CP068269.2:6 664 829

135

SINE (AluY)

1

CP068269.2:7 855 153

327

SINE (AluYb9)

1

CP068269.2:9 145 491

320

SINE (AluYb8)

1

CP068269.2:19 378 518

95

SINE (AluYa5)

1

CP068269.2:28 208 722

312

SINE (AluYa5)

1

CP068269.2:29 465 381

190

LINE (L1HS)

1

CP068269.2:30 361 586

314

SINE (AluY)

1

CP068269.2:33 442 084

36

Retroposon (SVA_F)

1

CP068269.2:35 038 160

63

LINE (L1PA10)

1

CP068269.2:38 265 890

78

Retroposon (SVA_A)

1

CP068269.2:40 202 609

321

SINE (AluYa5)

1

CP068269.2:83 123 285

132

SINE (AluY)

1

CP068269.2:84 265 385

48

SINE (Alu)

1

CP068269.2:84 767 523

313

SINE (AluYa5)

1

CP068269.2:88 666 159

315

SINE (AluYb8)

1

CP068269.2:92 810 524

59

LINE (L1P2)

1

CP068269.2:95 422 400

36

Retroposon (SVA_A)

1

CP068269.2:102 597 254

306

SINE (AluYa5)

1

CP068269.2:112 443 781

81

SINE (AluSz)

1

CP068269.2:112 839 663

68

LTR (MER52A)

1

CP068269.2:119 842 404

312

SINE (AluYk2)

1

CP068269.2:124 311 519

315

SINE (AluYb9)

1

CP068269.2:138 384 259

298

LINE (L1M4)

1

CP068269.2:142 711 624

39

Retroposon (SVA_B)

1

CP068269.2:143 939 557

43

SINE (AluYi6)

1

CP068268.2:3 057 186

33

SINE (AluYh3)

1

CP068268.2:10 778 281

170

SINE (AluYc)

1

CP068268.2:13 230 543

312

SINE (AluYb8)

1

CP068268.2:14 722 876

64

LINE (L1MC)

1

CP068268.2:29 201 484

188

LTR (MLT1F-int)

1

CP068268.2:30 638 183

125

SINE (AluSx)

1

CP068268.2:53 450 889

81

LTR (MLT1J)

1

CP068268.2:60 550 872

127

Retroposon (SVA_F)

1

CP068268.2:67 440 301

327

SINE (AluY)

1

CP068268.2:72 740 845

39

Retroposon (SVA_D)

1

CP068268.2:72 746 623

47

Retroposon (SVA_F)

1

CP068268.2:72 773 055

313

SINE (AluYa5)

1

CP068268.2:76 207 675

48

Retroposon (SVA_F)

1

CP068268.2:87 790 483

326

SINE (AluY)

1

CP068268.2:88 939 111

319

SINE (AluYa5)

1

CP068268.2:97 658 629

311

SINE (AluYa5)

1

CP068268.2:97 822 125

48

Retroposon (SVA_F)

1

CP068268.2:102 921 216

141

Retroposon (SVA_E)

1

CP068268.2:107 018 348

141

SINE (FLAM_C)

1

CP068268.2:108 118 466

321

SINE (AluYa5)

1

CP068268.2:109 582 446

833

LINE (L1HS)

1

CP068268.2:113 205 090

311

SINE (AluY)

1

CP068268.2:123 851 455

318

SINE (AluY)

1

CP068267.2:473 330

320

SINE (AluYe5)

1

CP068267.2:8 515 636

30

SINE (AluSp)

1

CP068267.2:20 669 487

50

Retroposon (SVA_F)

1

CP068267.2:25 682 675

343

SINE (AluYa5)

1

CP068267.2:27 776 457

330

LTR (MER61E)

1

CP068267.2:58 403 047

325

SINE (AluYb8)

1

CP068267.2:58 991 318

330

SINE (AluYb8)

1

CP068267.2:60 485 034

78

LINE (L1HS)

1

CP068267.2:63 882 702

258

LINE (L1MB8)

1

CP068267.2:75 339 541

77

Retroposon (SVA_F)

1

CP068267.2:78 812 746

73

Retroposon (SVA_B)

1

CP068267.2:79 061 406

55

LTR (ERVL-B4-int)

1

CP068267.2:80 466 708

124

LTR (LTR12D)

1

CP068267.2:82 117 611

39

Retroposon (SVA_B)

1

CP068267.2:92 080 729

89

Retroposon (SVA_F)

1

CP068267.2:95 142 638

42

SINE (Alu)

1

CP068267.2:96 505 971

317

SINE (AluYk3)

1

CP068267.2:101 555 768

326

SINE (AluYb8)

1

CP068267.2:118 715 549

133

SINE (AluSx)

1

CP068267.2:119 529 515

48

Retroposon (SVA_F)

1

CP068267.2:125 878 132

153

LINE (L1PA10)

1

CP068266.2:4 668 545

310

SINE (AluYg6)

1

CP068266.2:5 668 025

298

SINE (AluYd8)

1

CP068266.2:6 807 792

255

SINE (AluYk2)

1

CP068266.2:7 694 453

129

SINE (AluSx)

1

CP068266.2:8 608 362

115

Retroposon (SVA_C)

1

CP068266.2:8 608 837

46

Retroposon (SVA_F)

1

CP068266.2:12 283 010

97

Retroposon (SVA_F)

1

CP068266.2:13 980 293

329

SINE (AluYb8)

1

CP068266.2:14 045 352

191

Retroposon (SVA_C)

1

CP068266.2:25 181 209

327

SINE (AluY)

1

CP068266.2:29 284 341

35

LINE (L1P1)

1

CP068266.2:29 543 251

312

SINE (AluYa5)

1

CP068266.2:37 920 130

325

SINE (AluYb9)

1

CP068266.2:37 921 040

317

SINE (AluY)

1

CP068266.2:38 276 130

41

Retroposon (SVA_F)

1

CP068266.2:38 279 973

45

Retroposon (SVA_B)

1

CP068266.2:38 940 562

337

LINE (L1P1)

1

CP068266.2:41 239 964

344

LINE (L1P3)

1

CP068266.2:43 644 065

126

Retroposon (SVA_F)

1

CP068266.2:48 293 798

196

Retroposon (SVA_F)

1

CP068266.2:48 294 118

36

Retroposon (SVA_F)

1

CP068266.2:49 751 836

85

SINE (AluY)

1

CP068266.2:64 182 833

84

LINE (L1PA11)

1

CP068266.2:71 111 190

320

SINE (AluYb9)

1

CP068266.2:77 423 086

101

SINE (MIRb)

1

CP068266.2:83 544 576

315

SINE (AluY)

1

CP068266.2:83 671 163

322

SINE (AluYb8)

1

CP068266.2:85 910 505

315

SINE (AluY)

1

CP068266.2:86 830 420

144

SINE (AluSx)

1

CP068266.2:87 458 392

320

SINE (AluY)

1

CP068266.2:93 946 035

317

SINE (AluY)

1

CP068266.2:96 952 164

305

SINE (AluYa5)

1

CP068266.2:101 881 504

101

SINE (AluYb8)

1

CP068266.2:104 884 820

186

SINE (AluYb9)

1

CP068266.2:121 990 178

439

Retroposon (SVA_E)

1

CP068266.2:126 429 324

326

SINE (AluYb8)

1

CP068266.2:126 723 341

318

SINE (AluYb8)

1

CP068265.2:22 184 435

327

SINE (AluY)

1

CP068265.2:25 455 895

315

SINE (AluY)

1

CP068265.2:41 908 589

236

SINE (AluY)

1

CP068265.2:45 366 989

317

SINE (AluYa5)

1

CP068265.2:49 104 638

47

LINE (L1PA8)

1

CP068265.2:56 231 795

114

SINE (AluY)

1

CP068265.2:57 263 121

290

SINE (AluYb9)

1

CP068265.2:68 684 135

323

SINE (AluYa5)

1

CP068265.2:69 509 381

322

SINE (AluYb8)

1

CP068265.2:77 302 799

314

SINE (AluYa5)

1

CP068265.2:78 735 172

314

SINE (AluYa5)

1

CP068265.2:82 608 311

220

SINE (AluYc)

1

CP068265.2:85 705 616

304

SINE (AluYa5)

1

CP068265.2:85 943 031

288

SINE (AluYa5)

1

CP068265.2:88 073 850

314

SINE (AluSc)

1

CP068265.2:88 953 729

326

SINE (AluY)

1

CP068265.2:98 181 350

134

SINE (AluYk2)

1

CP068265.2:107 842 849

60

LINE (L1M4)

1

CP068265.2:109 388 985

313

SINE (AluYb8)

1

CP068265.2:112 115 809

313

SINE (AluYa5)

1

CP068264.2:5 878 583

33

LTR (LTR6A)

1

CP068264.2:18 410 907

164

SINE (AluSx4)

1

CP068264.2:28 610 960

296

SINE (AluYa5)

1

CP068264.2:31 745 095

40

Retroposon (SVA_C)

1

CP068264.2:34 300 938

324

SINE (AluYa5)

1

CP068264.2:34 313 688

131

SINE (AluYe5)

1

CP068264.2:49 662 177

38

Retroposon (SVA_A)

1

CP068264.2:92 910 435

53

SINE (Alu)

1

CP068263.2:18 206 748

27

DNA (Tigger3c)

1

CP068263.2:25 673 162

392

LINE (L1HS)

1

CP068263.2:30 617 379

312

SINE (AluYc)

1

CP068263.2:34 360 211

346

SINE (AluYa5)

1

CP068263.2:38 489 390

36

Retroposon (SVA_F)

1

CP068263.2:53 913 580

201

Retroposon (SVA_D)

1

CP068263.2:58 168 194

311

SINE (AluYa5)

1

CP068263.2:58 727 456

322

SINE (AluY)

1

CP068263.2:67 938 502

312

SINE (AluYa5)

1

CP068263.2:75 994 840

163

SINE (AluSx4)

1

CP068263.2:78 233 814

315

SINE (AluY)

1

CP068263.2:82 606 621

317

SINE (AluYa5)

1

CP068263.2:92 385 824

305

SINE (AluYk2)

1

CP068263.2:97 321 467

49

SINE (Alu)

1

CP068262.2:4 839 789

41

SINE (Alu)

1

CP068262.2:5 231 896

79

Retroposon (SVA_F)

1

CP068262.2:11 372 260

247

Retroposon (SVA_A)

1

CP068262.2:15 116 748

85

SINE (AluSc)

1

CP068262.2:21 163 025

317

SINE (AluY)

1

CP068262.2:21 521 202

122

SINE (AluJb)

1

CP068262.2:26 873 866

336

SINE (AluY)

1

CP068262.2:31 557 109

48

Retroposon (SVA_F)

1

CP068262.2:62 994 200

43

SINE (AluJo)

1

CP068262.2:63 015 018

316

SINE (AluYa5)

1

CP068262.2:63 087 387

180

SINE (AluYa5)

1

CP068262.2:64 052 598

319

SINE (AluYa5)

1

CP068262.2:64 555 275

134

SINE (AluSz)

1

CP068262.2:64 559 334

55

SINE (AluSx3)

1

CP068262.2:83 862 431

133

SINE (AluSc8)

1

CP068262.2:86 496 712

314

SINE (AluYa5)

1

CP068262.2:88 229 527

35

DNA (Tigger3c)

1

CP068262.2:95 205 915

33

LINE (L1MD)

1

CP068262.2:95 699 163

42

SINE (FLAM_C)

1

CP068262.2:95 928 542

313

SINE (AluSx)

1

CP068261.2:285 540

345

SINE (AluYb8)

1

CP068261.2:3 000 911

39

Retroposon (SVA_D)

1

CP068261.2:3 001 300

39

Retroposon (SVA_D)

1

CP068261.2:4 300 934

257

LINE (L1HS)

1

CP068261.2:28 153 050

173

Retroposon (SVA_F)

1

CP068261.2:38 008 693

192

SINE (AluYc)

1

CP068261.2:45 034 219

255

Retroposon (SVA_F)

1

CP068261.2:55 582 093

670

LINE (L1PREC2)

1

CP068261.2:61 447 465

325

SINE (AluY)

1

CP068261.2:68 170 920

159

LTR (LTR12C)

1

CP068261.2:69 968 390

311

SINE (AluYa5)

1

CP068261.2:75 907 696

47

SINE (AluJr4)

1

CP068261.2:76 696 269

95

SINE (AluY)

1

CP068261.2:78 886 239

314

SINE (AluYg6)

1

CP068260.2:3 032 121

146

SINE (AluYk2)

1

CP068260.2:9 097 970

101

LTR (LTR12C)

1

CP068260.2:9 564 592

322

SINE (AluYa5)

1

CP068260.2:14 173 520

35

Retroposon (SVA_F)

1

CP068260.2:28 466 226

349

SINE (AluY)

1

CP068260.2:35 273 621

317

SINE (AluYa5)

1

CP068260.2:39 128 267

316

SINE (AluYa5)

1

CP068260.2:46 361 667

327

SINE (AluYb8)

1

CP068260.2:46 381 044

31

SINE (Alu)

1

CP068260.2:53 996 308

73

LINE (L1PBa)

1

CP068260.2:54 439 434

166

LINE (L1HS)

1

CP068260.2:56 003 038

320

SINE (AluYa5)

1

CP068260.2:57 710 913

314

SINE (AluSp)

1

CP068260.2:64 814 676

174

Retroposon (SVA_F)

1

CP068260.2:68 770 943

325

SINE (AluYb9)

1

CP068260.2:71 698 063

53

LINE (L1P3b)

1

CP068260.2:76 087 428

323

SINE (AluYb8)

1

CP068260.2:77 079 847

311

SINE (AluYk2)

1

CP068259.2:646 264

71

SINE (AluSp)

1

CP068259.2:1 895 198

134

SINE (AluJb)

1

CP068259.2:6 976 774

325

SINE (AluY)

1

CP068259.2:16 099 582

316

SINE (AluY)

1

CP068259.2:16 391 116

140

SINE (AluJb)

1

CP068259.2:17 727 863

50

LTR (LTR7)

1

CP068259.2:31 262 878

598

LINE (L1P4)

1

CP068259.2:36 653 349

175

Retroposon (SVA_F)

1

CP068259.2:49 705 356

83

SINE (AluSc8)

1

CP068259.2:53 674 285

100

SINE (AluJb)

1

CP068259.2:54 049 533

135

SINE (AluSx)

1

CP068258.2:996 590

101

LINE (L2a)

1

CP068258.2:5 544 074

303

SINE (AluYc)

1

CP068258.2:5 544 134

289

SINE (AluYc)

1

CP068258.2:9 684 360

118

LTR (LTR12C)

1

CP068258.2:16 901 268

325

SINE (AluYa5)

1

CP068258.2:16 945 493

343

SINE (AluY)

1

CP068258.2:30 503 819

38

Retroposon (SVA_C)

1

CP068258.2:30 946 834

128

LTR (LTR5A)

1

CP068258.2:31 430 118

813

LTR (PRIMA41-int)

1

CP068258.2:31 915 416

391

LINE (L1P1)

1

CP068258.2:33 846 866

46

Retroposon (SVA_F)

1

CP068258.2:37 925 585

290

SINE (AluSx)

1

CP068258.2:41 313 432

310

SINE (AluYb8)

1

CP068258.2:52 135 819

35

SINE (Alu)

1

CP068258.2:55 000 758

56

DNA (MER20)

1

CP068258.2:57 639 784

74

LINE (L1P1)

1

CP068258.2:62 091 491

125

SINE (AluSc)

1

CP068257.2:12 279 093

189

Retroposon (SVA_A)

1

CP068257.2:21 725 991

328

SINE (AluYk2)

1

CP068257.2:23 482 882

318

SINE (AluYk2)

1

CP068257.2:25 547 133

320

SINE (AluYa5)

1

CP068257.2:34 874 715

319

SINE (AluY)

1

CP068257.2:39 632 876

50

LTR (LTR7)

1

CP068257.2:42 828 950

135

SINE (AluSz)

1

CP068257.2:43 632 831

48

Retroposon (SVA_F)

1

CP068256.2:18 235 399

357

SINE (AluYb8)

1

CP068256.2:22 297 087

48

Retroposon (SVA_F)

1

CP068256.2:28 841 478

320

SINE (AluYa5)

1

CP068256.2:29 242 941

316

SINE (AluYa5)

1

CP068256.2:32 056 342

296

Retroposon (SVA_F)

1

CP068256.2:32 611 944

90

LTR (MER11C)

1

CP068256.2:43 299 732

313

SINE (AluYa5)

1

CP068256.2:50 173 743

150

LTR (LTR12C)

1

CP068255.2:295 086

164

SINE (AluSx)

1

CP068255.2:1 251 770

209

SINE (AluJb)

1

CP068255.2:24 293 358

128

Retroposon (SVA_F)

1

CP068255.2:25 517 581

333

SINE (AluYb8)

1

CP068255.2:45 336 671

220

LINE (L1M4b)

1

CP068255.2:45 336 912

541

LINE (L1M4a1)

1

CP068255.2:45 683 112

125

Retroposon (SVA_F)

1

CP068255.2:76 700 508

47

Retroposon (SVA_F)

1

CP068255.2:83 656 505

86

LINE (L1MC5)

1

CP068255.2:83 683 173

331

SINE (AluY)

1

CP068255.2:84 185 565

49

LINE (L1P1)

1

CP068255.2:86 915 067

296

SINE (AluYb8)

1

CP068255.2:88 182 066

136

SINE (AluY)

1

CP068255.2:90 623 038

134

SINE (AluSq)

1

CP068255.2:100 344 903

51

LINE (L1PB)

1

CP068255.2:136 580 331

50

LTR (LTR7)

1

CP068255.2:146 566 678

210

LINE (L1P2)

1

CP086569.2:306 952

164

SINE (AluSx)

1

CP086569.2:949 758

135

SINE (AluSq)

1

CP086569.2:1 096 397

125

Retroposon (SVA_F)

1


  • 1 871 TE insertions were found with an AF ≥ 0.5.
A Manhattan plot of AFs is shown below.
Allele frequency is shown for insertions for each chromosome. Each dot marks a different insertion.

Allele frequency is shown for insertions for each chromosome. Each dot marks a different insertion.

1.2.3 Genome distribution

A) Unique TE insertions occurences on the genome. B) Gene annotations of TE insertions on the genome. A single TE may be annotated more than once.

  1. Unique TE insertions occurences on the genome. B) Gene annotations of TE insertions on the genome. A single TE may be annotated more than once.

2 Analysis by TE class

This is the classification of TEs by class (I or II), family (e.g., SINE), subfamily (e.g., Alu) and name (e.g., AluY). SVA, Alu and L1 elements have their own table on the Class I section.

Repeat
family

Repeat
subfamily

Unique

Total
(lax)

Total
(strict)

DNA

hAT

3

6

5

TcMar

2

3

3

LINE

CR1

1

2

2

L1

88

174

173

L2

3

6

6

LTR

ERV1

28

54

51

ERVK

3

6

6

ERVL

10

19

16

Retroposon

SVA

130

249

232

SINE

Alu

751

1 501

1 488

MIR

1

2

1

Total

-

1 020

2 022

1 983

2.1 Class I Elements

2.1.1 Distribution

A) Unique class I TE insertions occurrences on the genome. B) Gene annotations of class I TE insertions on the genome. A single TE may be annotated more than once.

  1. Unique class I TE insertions occurrences on the genome. B) Gene annotations of class I TE insertions on the genome. A single TE may be annotated more than once.

Detailed classification

Count of SVA elements by name

Name

Unique

Total
(lax)

Total
(strict)

SVA A

14

28

25

SVA B

3

6

6

SVA C

4

7

7

SVA D

6

11

11

SVA E

21

42

38

SVA F

81

153

143

SVA F1

1

2

2

Total

130

249

232

Click to show table with Alu counts by name.
Count of _Alu_ elements by name

Name

Unique

Total
(lax)

Total
(strict)

Alu

3

6

5

AluJb

15

30

28

AluJo

1

2

1

AluSc

3

6

6

AluSc8

4

8

8

AluSg

7

14

13

AluSg4

1

2

2

AluSp

2

4

4

AluSq

2

4

4

AluSx

32

64

60

AluSx3

3

6

5

AluSx4

3

6

5

AluSz

5

10

9

AluSz6

1

2

2

AluY

170

340

340

AluYa5

220

440

440

AluYa8

4

8

8

AluYb8

140

280

280

AluYb9

23

46

46

AluYc

15

30

30

AluYd8

3

6

5

AluYe5

23

46

46

AluYg6

19

38

38

AluYh7

3

6

6

AluYi6

3

6

6

AluYj4

2

4

4

AluYk11

1

2

2

AluYk12

2

4

4

AluYk2

33

66

66

AluYk3

2

4

4

AluYk4

2

4

4

FLAM C

2

4

4

FRAM

2

3

3

Total

751

1 501

1 488

Click to show table with L1 counts by name.
Count of L1 elements by name

Name

Unique

Total
(lax)

Total
(strict)

L1HS

42

84

84

L1M2

3

6

6

L1M3

2

4

4

L1M3b

1

2

2

L1M4

2

4

4

L1M5

1

2

2

L1MB2

1

2

2

L1MB8

1

2

2

L1MC

1

2

2

L1MC4

2

4

4

L1MC5

1

2

2

L1P1

5

10

9

L1P3

7

13

13

L1P3b

1

2

2

L1P4

1

1

1

L1P4a

1

2

2

L1PA10

1

2

2

L1PA11

1

2

2

L1PA12

1

2

2

L1PA13

1

2

2

L1PA16

2

4

4

L1PA2

2

4

4

L1PA3

1

2

2

L1PA7

2

4

4

L1PB

2

4

4

L1PB1

2

4

4

L1PREC2

1

2

2

Total

88

174

173

2.1.2 Class II TEs on gene sequences

Click to show table with 1015 rows.

Position

Length

Type

Gene

Annotation

Occurrences

CP068255.2:1 251 770

209

SINE (Alu)

ASMTL-AS1

Intron

2

CP068255.2:5 749 734

114

SINE (Alu)

NLGN4X

Intron

2

CP068255.2:18 657 080

53

SINE (Alu)

ADGRG2

Intron

2

CP068255.2:22 237 816

314

SINE (Alu)

PTCHD1-AS

Intron

2

CP068255.2:24 293 358

128

Retroposon (SVA)

POLA1

Intron

2

CP068255.2:28 925 984

49

Retroposon (SVA)

IL1RAPL1

Intron

2

CP068255.2:32 882 840

308

SINE (Alu)

DMD

Intron

2

CP068255.2:83 564 693

326

SINE (Alu)

SATL1

Intron

2

CP068255.2:83 656 505

86

LINE (L1)

SATL1

Intron

2

CP068255.2:83 683 173

331

SINE (Alu)

ZNF711

Intron

2

CP068255.2:84 713 986

311

SINE (Alu)

DACH2

Intron

2

CP068255.2:90 623 038

134

SINE (Alu)

PCDH11X

Intron

2

CP068255.2:95 509 280

319

SINE (Alu)

DIAPH2

Intron

2

CP068255.2:100 344 903

51

LINE (L1)

ZMAT1

Intron

2

CP068255.2:110 764 583

6 052

LINE (L1)

RTL4

Intron

2

CP068255.2:120 735 396

327

SINE (Alu)

LOC101928359

Intron

2

CP068255.2:135 342 456

346

SINE (Alu)

GPR101

Promoter

2

CP068255.2:146 257 439

448

Retroposon (SVA)

FMR1NB

Intron

2

CP068255.2:295 086

164

SINE (Alu)

LOC102724521

Intron

2

CP068256.2:7 583 739

315

SINE (Alu)

LOC128966699

Promoter

2

CP068256.2:18 235 399

357

SINE (Alu)

SLC25A18

Intron

2

CP068256.2:25 461 788

294

SINE (Alu)

KIAA1671

Intron

2

CP068256.2:27 234 737

2 641

Retroposon (SVA)

MIATNB

Intron

2

CP068256.2:28 841 478

320

SINE (Alu)

TTC28

Intron

2

CP068256.2:29 242 941

316

SINE (Alu)

CCDC117

Intron

2

CP068256.2:32 056 342

296

Retroposon (SVA)

SFI1

Intron

1

CP068256.2:32 276 540

315

SINE (Alu)

DEPDC5

Intron

2

CP068256.2:34 131 369

120

SINE (Alu)

LARGE1

Intron

2

CP068256.2:40 671 166

320

SINE (Alu)

TNRC6B

Intron

2

CP068256.2:41 793 756

312

SINE (Alu)

ZC3H7B

Intron

2

CP068256.2:43 028 173

130

SINE (Alu)

LOC124900479

Intron

1

CP068256.2:43 299 732

313

SINE (Alu)

ARFGAP3

Intron

2

CP068256.2:43 634 478

324

SINE (Alu)

TSPO

Intron

2

CP068256.2:44 411 840

1 148

LINE (L1)

PNPLA3

Intron

2

CP068256.2:45 651 198

124

SINE (Alu)

NUP50

Intron

2

CP068257.2:12 279 093

189

Retroposon (SVA)

LOC110091776

Promoter

2

CP068257.2:13 335 804

323

SINE (Alu)

NRIP1

Intron

2

CP068257.2:13 911 959

386

LINE (L1)

LOC105369302

Intron

2

CP068257.2:15 595 054

1 300

LINE (L1)

LOC107985511

Intron

2

CP068257.2:16 504 323

3 394

LINE (L1)

CHODL

Intron

2

CP068257.2:19 777 200

199

LTR (ERVL)

NCAM2

Intron

1

CP068257.2:21 725 991

328

SINE (Alu)

D21S2088E

Intron

2

CP068257.2:23 810 679

259

LINE (L1)

LOC105372753

Intron

2

CP068257.2:25 547 133

320

SINE (Alu)

LOC102724355

Intron

2

CP068257.2:34 874 715

319

SINE (Alu)

CLDN14-AS1

Intron

2

CP068257.2:36 014 613

321

SINE (Alu)

KCNJ6-AS1

Intron

2

CP068257.2:38 974 146

117

SINE (Alu)

DSCAM

Intron

2

CP068257.2:39 632 876

50

LTR (ERV1)

BACE2

Intron

2

CP068257.2:44 520 712

144

LTR (ERV1)

FTCD

Intron

2

CP068257.2:44 525 067

153

LTR (ERV1)

FTCD

Intron

1

CP068258.2:1 197 104

155

SINE (Alu)

PSMF1

Intron

1

CP068258.2:8 879 007

301

SINE (Alu)

PLCB1

Intron

2

CP068258.2:9 667 448

319

SINE (Alu)

LOC101929348

Intron

2

CP068258.2:9 684 360

118

LTR (ERV1)

PAK5

Intron

2

CP068258.2:9 703 216

287

SINE (Alu)

PAK5

Intron

2

CP068258.2:15 176 135

290

SINE (Alu)

MACROD2

Intron

2

CP068258.2:15 781 254

814

LINE (L1)

MACROD2

Intron

2

CP068258.2:21 237 843

1 435

LINE (L1)

KIZ

Intron

2

CP068258.2:25 627 225

446

Retroposon (SVA)

NINL

Intron

2

CP068258.2:33 194 638

125

Retroposon (SVA)

DEFB124

Intron

2

CP068258.2:35 932 030

321

SINE (Alu)

ASIP

Intron

2

CP068258.2:36 754 499

319

SINE (Alu)

TRPC4AP

Intron

2

CP068258.2:36 761 459

96

LTR (ERVL)

TRPC4AP

Intron

1

CP068258.2:36 874 438

215

Retroposon (SVA)

MMP24-AS1-EDEM2

Intron

2

CP068258.2:36 875 038

53

Retroposon (SVA)

MMP24-AS1-EDEM2

Intron

1

CP068258.2:37 925 585

290

SINE (Alu)

EPB41L1

Intron

2

CP068258.2:38 114 785

94

SINE (Alu)

DLGAP4

Intron

2

CP068258.2:38 911 585

312

SINE (Alu)

RPN2

Intron

2

CP068258.2:60 921 676

308

SINE (Alu)

ZNF831

Intron

2

CP068258.2:62 091 491

125

SINE (Alu)

MIR646HG

Intron

2

CP068258.2:63 187 711

319

SINE (Alu)

CDH4

Intron

2

CP068259.2:1 895 198

134

SINE (Alu)

SCAMP4

Intron

2

CP068259.2:1 997 543

308

SINE (Alu)

LOC107985278

Intron

2

CP068259.2:2 535 989

124

SINE (Alu)

GNG7

Intron

2

CP068259.2:3 262 720

318

SINE (Alu)

CELF5

Intron

2

CP068259.2:3 888 434

300

SINE (Alu)

ATCAY

Intron

2

CP068259.2:6 141 007

264

SINE (Alu)

ACSBG2

Intron

2

CP068259.2:6 151 665

290

SINE (Alu)

ACSBG2

Intron

2

CP068259.2:6 976 774

325

SINE (Alu)

ADGRE4P

Intron

2

CP068259.2:9 618 039

1 073

LTR (ERVL)

ZNF560

Intron

2

CP068259.2:10 463 384

309

SINE (Alu)

ICAM3

Intron

2

CP068259.2:17 856 391

165

SINE (Alu)

MAP1S

Intron

2

CP068259.2:18 265 763

319

SINE (Alu)

MAST3

Intron

2

CP068259.2:21 241 834

335

SINE (Alu)

ZNF714

Intron

2

CP068259.2:22 003 898

97

Retroposon (SVA)

LOC105372324

Intron

2

CP068259.2:22 772 644

312

SINE (Alu)

ZNF492

Promoter

2

CP068259.2:22 775 504

307

SINE (Alu)

ZNF492

Intron

2

CP068259.2:23 707 798

576

Retroposon (SVA)

LOC105372339

Intron

2

CP068259.2:31 895 943

960

LTR (ERVK)

VSTM2B-DT

Intron

2

CP068259.2:40 925 916

77

Retroposon (SVA)

SIPA1L3

Intron

2

CP068259.2:41 343 632

135

SINE (Alu)

RYR1

Intron

1

CP068259.2:44 182 455

292

SINE (Alu)

B9D2

Intron

1

CP068259.2:47 849 106

91

SINE (Alu)

RELB

Intron

2

CP068259.2:49 705 356

83

SINE (Alu)

ARHGAP35

Intron

2

CP068259.2:54 049 533

135

SINE (Alu)

LOC105372442

Intron

2

CP068259.2:54 361 759

311

SINE (Alu)

LINC01872

Intron

2

CP068259.2:56 273 788

202

SINE (Alu)

ZNF665

Promoter

2

CP068259.2:58 069 652

330

SINE (Alu)

NLRP2

Intron

2

CP068259.2:58 093 116

49

Retroposon (SVA)

NLRP2

Intron

1

CP068259.2:59 334 673

140

LTR (ERV1)

ZSCAN5A

Intron

1

CP068259.2:59 694 584

315

SINE (Alu)

ZNF71

Intron

2

CP068259.2:61 501 640

173

Retroposon (SVA)

ZNF584

Intron

2

CP068259.2:430 837

132

SINE (Alu)

CIMAP1D

Intron

2

CP068259.2:646 264

71

SINE (Alu)

PRSS57

Intron

2

CP068259.2:773 677

308

SINE (Alu)

PLPPR3

Intron

2

CP068260.2:3 032 121

146

SINE (Alu)

EMILIN2

Intron

2

CP068260.2:11 073 229

317

SINE (Alu)

PIEZO2

Intron

2

CP068260.2:13 014 200

326

SINE (Alu)

PTPN2

Intron

2

CP068260.2:27 152 079

317

SINE (Alu)

CHST9

Intron

2

CP068260.2:35 273 621

317

SINE (Alu)

MAPRE2

Intron

2

CP068260.2:50 011 949

174

Retroposon (SVA)

ACAA2

Intron

1

CP068260.2:53 663 279

319

SINE (Alu)

DCC

Intron

2

CP068260.2:56 003 038

320

SINE (Alu)

LOC105372130

Intron

2

CP068260.2:56 891 790

331

SINE (Alu)

WDR7

Intron

2

CP068260.2:57 914 127

142

SINE (Alu)

ATP8B1

Intron

2

CP068260.2:59 685 434

314

SINE (Alu)

CCBE1

Intron

2

CP068260.2:66 072 639

337

SINE (Alu)

CDH7

Intron

2

CP068260.2:69 709 407

314

SINE (Alu)

DOK6

Intron

2

CP068260.2:70 644 924

312

SINE (Alu)

RPS2P6

Promoter

2

CP068260.2:70 644 924

312

SINE (Alu)

LOC124908034

Intron

2

CP068260.2:71 698 063

53

LINE (L1)

LOC107985179

Intron

2

CP068260.2:73 827 616

319

SINE (Alu)

LOC105372190

Intron

2

CP068260.2:77 079 847

311

SINE (Alu)

ZNF236

Promoter

2

CP068260.2:77 079 847

311

SINE (Alu)

ZNF236

Intron

2

CP068260.2:77 259 157

173

Retroposon (SVA)

MBP

Intron

2

CP068261.2:1 101 211

320

SINE (Alu)

ABR

Intron

2

CP068261.2:2 705 744

84

SINE (Alu)

RAP1GAP2

Intron

2

CP068261.2:9 176 006

133

SINE (Alu)

STX8

Intron

2

CP068261.2:10 207 977

333

SINE (Alu)

LOC107985004

Intron

2

CP068261.2:11 562 452

331

SINE (Alu)

DNAH9

Intron

2

CP068261.2:13 709 042

286

SINE (Alu)

LOC100506974

Intron

2

CP068261.2:19 987 002

2 410

Retroposon (SVA)

SPECC1

Intron

2

CP068261.2:20 934 081

95

Retroposon (SVA)

LOC124900389

Intron

2

CP068261.2:32 278 209

348

LINE (L1)

NF1

Intron

2

CP068261.2:33 256 488

169

SINE (Alu)

RHBDL3

Intron

2

CP068261.2:33 264 228

184

SINE (Alu)

RHBDL3

Intron

2

CP068261.2:38 008 693

192

SINE (Alu)

AATF

Intron

2

CP068261.2:45 034 219

255

Retroposon (SVA)

ASB16-AS1

Intron

2

CP068261.2:49 291 096

324

SINE (Alu)

SKAP1

Intron

2

CP068261.2:52 198 654

330

SINE (Alu)

LINC02071

Intron

2

CP068261.2:58 722 101

310

SINE (Alu)

MRPS23

Intron

2

CP068261.2:58 788 526

320

SINE (Alu)

CUEDC1

Intron

2

CP068261.2:61 447 465

325

SINE (Alu)

LINC01999

Intron

2

CP068261.2:68 400 649

315

SINE (Alu)

PITPNC1

Intron

2

CP068261.2:68 426 011

300

SINE (Alu)

PITPNC1

Intron

2

CP068261.2:69 968 390

311

SINE (Alu)

ABCA6

Intron

2

CP068261.2:75 935 935

315

SINE (Alu)

KCTD2

Intron

2

CP068261.2:76 696 269

95

SINE (Alu)

UNK

Intron

2

CP068261.2:78 886 239

314

SINE (Alu)

TNRC6C

Intron

2

CP068261.2:81 014 286

314

SINE (Alu)

GAA

Intron

2

CP068261.2:82 055 352

321

SINE (Alu)

AATK

Intron

2

CP068261.2:82 527 911

321

SINE (Alu)

NPLOC4

Promoter

2

CP068261.2:82 527 911

321

SINE (Alu)

NPLOC4

Intron

2

CP068261.2:83 676 846

1 407

Retroposon (SVA)

TBCD

Intron

2

CP068261.2:455 384

97

Retroposon (SVA)

VPS53

Intron

2

CP068261.2:482 199

96

Retroposon (SVA)

VPS53

Intron

1

CP068261.2:718 177

310

SINE (Alu)

NXN

Intron

2

CP068262.2:5 324 686

318

SINE (Alu)

RBFOX1

Intron

2

CP068262.2:6 773 894

1 435

LINE (L1)

RBFOX1

Intron

2

CP068262.2:7 207 290

327

SINE (Alu)

RBFOX1

Intron

2

CP068262.2:11 372 260

247

Retroposon (SVA)

LOC105371082

Intron

1

CP068262.2:15 116 748

85

SINE (Alu)

PDXDC1

Intron

2

CP068262.2:19 426 191

321

SINE (Alu)

TMC5

Intron

2

CP068262.2:21 163 025

317

SINE (Alu)

LOC105371123

Intron

2

CP068262.2:63 015 018

316

SINE (Alu)

RSPRY1

Intron

2

CP068262.2:64 052 598

319

SINE (Alu)

CFAP263

Intron

2

CP068262.2:64 555 275

134

SINE (Alu)

LOC107984867

Intron

1

CP068262.2:64 559 334

55

SINE (Alu)

LOC107984867

Intron

2

CP068262.2:65 734 387

317

SINE (Alu)

LINC02141

Intron

2

CP068262.2:65 799 075

316

SINE (Alu)

LINC02141

Intron

2

CP068262.2:75 622 943

53

SINE (Alu)

WWP2

Intron

2

CP068262.2:83 862 431

133

SINE (Alu)

VAT1L

Intron

2

CP068262.2:85 213 072

327

SINE (Alu)

WWOX

Intron

2

CP068262.2:86 496 712

314

SINE (Alu)

DYNLRB2-AS1

Intron

2

CP068262.2:89 164 544

334

SINE (Alu)

CDH13

Intron

2

CP068262.2:95 928 542

313

SINE (Alu)

SPIRE2

Intron

2

CP068262.2:449 468

320

SINE (Alu)

RAB11FIP3

Intron

2

CP068262.2:480 325

310

SINE (Alu)

RAB11FIP3

Intron

2

CP068263.2:21 696 325

306

SINE (Alu)

LOC107984787

Intron

2

CP068263.2:25 263 076

323

SINE (Alu)

GABRG3

Intron

2

CP068263.2:25 673 162

392

LINE (L1)

OCA2

Intron

2

CP068263.2:30 617 379

312

SINE (Alu)

FMN1

Intron

2

CP068263.2:32 986 716

317

SINE (Alu)

DPH6

Intron

2

CP068263.2:33 461 746

125

Retroposon (SVA)

DPH6-DT

Intron

2

CP068263.2:33 609 416

310

SINE (Alu)

DPH6-DT

Intron

2

CP068263.2:35 220 952

667

LINE (L1)

LOC105370772

Intron

2

CP068263.2:36 282 515

335

SINE (Alu)

FAM98B

Intron

2

CP068263.2:39 531 742

326

SINE (Alu)

MGA

Intron

2

CP068263.2:49 413 307

333

SINE (Alu)

DMXL2

Intron

2

CP068263.2:50 969 692

329

SINE (Alu)

LOC107983981

Intron

2

CP068263.2:51 766 353

327

SINE (Alu)

UNC13C

Intron

2

CP068263.2:53 913 580

201

Retroposon (SVA)

LOC124903498

Intron

2

CP068263.2:56 106 612

320

SINE (Alu)

LOC124907518

Intron

2

CP068263.2:58 168 194

311

SINE (Alu)

ANXA2

Intron

2

CP068263.2:58 727 456

322

SINE (Alu)

RORA

Intron

2

CP068263.2:64 197 247

323

SINE (Alu)

TIPIN

Intron

2

CP068263.2:65 174 493

338

SINE (Alu)

IQCH

Intron

2

CP068263.2:66 514 204

300

SINE (Alu)

CORO2B

Intron

2

CP068263.2:71 508 181

322

SINE (Alu)

CD276

Intron

2

CP068263.2:73 374 856

143

Retroposon (SVA)

PTPN9

Intron

2

CP068263.2:75 994 840

163

SINE (Alu)

CIB2

Promoter

2

CP068263.2:76 507 733

319

SINE (Alu)

CHRNB4

Intron

2

CP068263.2:77 366 877

313

SINE (Alu)

LOC105370919

Promoter

2

CP068263.2:78 233 814

315

SINE (Alu)

ARNT2-DT

Intron

2

CP068263.2:82 606 621

317

SINE (Alu)

ALPK3

Intron

2

CP068263.2:82 652 649

68

SINE (Alu)

SLC28A1

Intron

1

CP068263.2:83 433 722

329

SINE (Alu)

AKAP13

Intron

2

CP068263.2:88 387 090

341

SINE (Alu)

CRTC3

Intron

2

CP068263.2:90 786 186

317

SINE (Alu)

CHD2

Intron

2

CP068263.2:92 039 791

304

SINE (Alu)

MCTP2

Intron

2

CP068263.2:98 667 707

309

SINE (Alu)

ALDH1A3

Intron

2

CP068264.2:13 913 770

332

SINE (Alu)

OR11H2

Promoter

2

CP068264.2:14 215 583

351

SINE (Alu)

OR4K14

Intron

2

CP068264.2:15 771 109

327

SINE (Alu)

OR10G3

Intron

2

CP068264.2:17 906 484

331

SINE (Alu)

LOC105370409

Intron

2

CP068264.2:18 207 639

2 019

LINE (L1)

DHRS4L2

Intron

2

CP068264.2:18 410 907

164

SINE (Alu)

CHMP4A

Intron

1

CP068264.2:24 909 873

330

SINE (Alu)

SCFD1

Intron

2

CP068264.2:38 244 019

307

SINE (Alu)

LINC02307

Intron

2

CP068264.2:49 534 324

310

SINE (Alu)

FBXO34

Intron

2

CP068264.2:65 176 813

327

SINE (Alu)

PCNX1

Intron

2

CP068264.2:72 724 910

330

SINE (Alu)

NRXN3

Intron

2

CP068264.2:74 707 834

339

SINE (Alu)

CEP128

Intron

2

CP068264.2:82 496 919

297

SINE (Alu)

KCNK10

Intron

2

CP068264.2:86 382 901

2 610

Retroposon (SVA)

CPSF2

Intron

2

CP068264.2:94 611 760

326

SINE (Alu)

WDR25

Intron

2

CP068264.2:95 760 108

331

SINE (Alu)

LOC105370673

Intron

2

CP068264.2:101 041 873

367

LTR (ERVL)

LOC124907431

Promoter

2

CP068265.2:5 252 040

70

LINE (L1)

LOC124907012

Intron

2

CP068265.2:18 043 969

324

SINE (Alu)

ANKRD20A9P

Intron

2

CP068265.2:20 642 553

146

Retroposon (SVA)

ZDHHC20

Intron

2

CP068265.2:20 642 723

76

Retroposon (SVA)

ZDHHC20

Intron

2

CP068265.2:23 253 427

340

SINE (Alu)

SPATA13

Intron

2

CP068265.2:24 146 112

322

SINE (Alu)

TPTE2P1

Intron

2

CP068265.2:25 092 355

142

LTR (ERV1)

ATP8A2

Intron

2

CP068265.2:28 214 233

67

LTR (ERV1)

MTUS2

Intron

2

CP068265.2:28 541 097

308

SINE (Alu)

MTUS2

Intron

2

CP068265.2:28 603 950

322

SINE (Alu)

MTUS2

Intron

2

CP068265.2:33 759 335

76

Retroposon (SVA)

LINC02343

Intron

2

CP068265.2:38 095 120

315

SINE (Alu)

FREM2

Intron

2

CP068265.2:42 185 733

1 662

Retroposon (SVA)

EPSTI1

Intron

2

CP068265.2:44 598 905

656

LTR (ERV1)

TPT1-AS1

Intron

1

CP068265.2:45 294 975

309

SINE (Alu)

CPB2-AS1

Intron

2

CP068265.2:45 366 989

317

SINE (Alu)

LCP1

Intron

2

CP068265.2:48 723 119

77

Retroposon (SVA)

SETDB2-PHF11

Intron

2

CP068265.2:49 558 566

286

SINE (Alu)

DLEU1

Intron

2

CP068265.2:77 302 799

314

SINE (Alu)

OBI1-AS1

Intron

2

CP068265.2:77 410 850

327

SINE (Alu)

OBI1-AS1

Intron

2

CP068265.2:78 735 172

314

SINE (Alu)

NDFIP2

Intron

2

CP068265.2:84 144 201

221

SINE (Alu)

LOC105370290

Intron

2

CP068265.2:91 376 118

321

SINE (Alu)

GPC5

Intron

2

CP068265.2:91 791 178

320

SINE (Alu)

GPC5

Intron

2

CP068265.2:91 814 846

235

SINE (Alu)

GPC5

Intron

2

CP068265.2:93 800 756

143

SINE (Alu)

TGDS

Promoter

2

CP068265.2:98 181 350

134

SINE (Alu)

DOCK9

Intron

2

CP068265.2:100 098 881

315

SINE (Alu)

NALCN-AS1

Intron

2

CP068265.2:100 191 892

100

LTR (ERV1)

NALCN-AS1

Intron

1

CP068265.2:106 009 693

127

LINE (L1)

LOC105370349

Intron

1

CP068265.2:107 842 849

60

LINE (L1)

MYO16

Intron

2

CP068265.2:109 388 985

313

SINE (Alu)

COL4A1

Intron

2

CP068265.2:109 862 682

127

LTR (ERV1)

NAXD

Intron

2

CP068265.2:109 904 832

325

SINE (Alu)

CARS2

Intron

2

CP068265.2:110 189 654

247

SINE (Alu)

LOC105370364

Intron

2

CP068265.2:111 926 533

80

Retroposon (SVA)

ATP11AUN

Intron

2

CP068265.2:112 115 809

313

SINE (Alu)

ATP11A

Intron

2

CP068265.2:113 172 324

316

SINE (Alu)

C13orf46

Intron

2

CP068266.2:1 222 653

76

LINE (L1)

ERC1

Intron

2

CP068266.2:4 668 545

310

SINE (Alu)

NDUFA9

Intron

2

CP068266.2:5 668 025

298

SINE (Alu)

ANO2

Intron

2

CP068266.2:6 807 792

255

SINE (Alu)

CD4

Intron

2

CP068266.2:8 456 750

321

SINE (Alu)

CLEC6A

Intron

2

CP068266.2:10 533 754

171

LTR (ERV1)

STYK1

Intron

2

CP068266.2:10 681 320

287

SINE (Alu)

TAS2R8

Promoter

2

CP068266.2:10 960 223

334

SINE (Alu)

PRH1-PRR4

Intron

2

CP068266.2:10 975 580

313

SINE (Alu)

PRH1-PRR4

Intron

2

CP068266.2:12 283 010

97

Retroposon (SVA)

BORCS5

Intron

2

CP068266.2:12 654 312

1 779

LINE (L1)

APOLD1

Intron

2

CP068266.2:20 199 299

320

SINE (Alu)

LOC105369688

Intron

2

CP068266.2:20 732 559

319

SINE (Alu)

SLCO1B3

Intron

2

CP068266.2:21 811 737

332

SINE (Alu)

ABCC9

Intron

2

CP068266.2:24 169 786

315

SINE (Alu)

SOX5

Intron

2

CP068266.2:24 236 442

322

SINE (Alu)

SOX5

Intron

2

CP068266.2:25 390 110

469

LINE (L1)

LMNTD1

Intron

2

CP068266.2:26 657 340

156

Retroposon (SVA)

ITPR2

Intron

2

CP068266.2:26 657 758

146

Retroposon (SVA)

ITPR2

Intron

2

CP068266.2:27 153 024

326

SINE (Alu)

STK38L

Intron

2

CP068266.2:27 583 597

314

SINE (Alu)

MRPS35

Intron

2

CP068266.2:27 945 245

6 056

LINE (L1)

LOC105369710

Intron

2

CP068266.2:28 158 038

314

SINE (Alu)

CCDC91

Intron

2

CP068266.2:29 543 251

312

SINE (Alu)

TMTC1

Intron

2

CP068266.2:30 189 897

307

SINE (Alu)

LOC105369718

Intron

2

CP068266.2:32 081 943

332

SINE (Alu)

BICD1

Intron

2

CP068266.2:32 146 334

317

SINE (Alu)

BICD1

Intron

2

CP068266.2:40 391 171

305

SINE (Alu)

MUC19

Intron

2

CP068266.2:41 225 228

311

SINE (Alu)

PDZRN4

Intron

2

CP068266.2:41 239 964

344

LINE (L1)

PDZRN4

Intron

2

CP068266.2:50 567 396

3 142

Retroposon (SVA)

DIP2B

Intron

2

CP068266.2:50 739 488

307

SINE (Alu)

ATF1

Intron

2

CP068266.2:53 648 539

314

SINE (Alu)

ATP5MC2

Promoter

2

CP068266.2:56 751 564

48

Retroposon (SVA)

HSD17B6

Intron

1

CP068266.2:64 182 833

84

LINE (L1)

KICS2

Intron

2

CP068266.2:64 720 062

177

SINE (Alu)

GNS

Intron

2

CP068266.2:66 597 279

329

SINE (Alu)

GRIP1

Intron

2

CP068266.2:69 562 698

343

SINE (Alu)

MIR3913-2

Promoter

2

CP068266.2:71 111 190

320

SINE (Alu)

TSPAN8

Intron

2

CP068266.2:77 981 522

327

SINE (Alu)

NAV3

Intron

2

CP068266.2:84 069 393

314

SINE (Alu)

LOC107984536

Intron

2

CP068266.2:94 256 702

319

SINE (Alu)

PLXNC1

Intron

2

CP068266.2:95 818 964

2 729

Retroposon (SVA)

SNRPF-DT

Intron

2

CP068266.2:101 445 294

2 736

Retroposon (SVA)

SPIC

Intron

2

CP068266.2:101 881 504

101

SINE (Alu)

DRAM1

Intron

2

CP068266.2:103 861 548

325

SINE (Alu)

TTC41P

Intron

2

CP068266.2:104 285 275

95

Retroposon (SVA)

TXNRD1

Intron

1

CP068266.2:104 884 820

186

SINE (Alu)

SLC41A2

Intron

2

CP068266.2:105 341 485

313

SINE (Alu)

LOC105369957

Intron

2

CP068266.2:116 714 500

170

SINE (Alu)

SPRING1

Intron

2

CP068266.2:117 736 378

3 759

LINE (L1)

KSR2

Intron

2

CP068266.2:121 990 178

439

Retroposon (SVA)

CFAP251

Intron

2

CP068266.2:122 233 522

78

SINE (Alu)

VPS33A

Intron

2

CP068266.2:122 521 590

324

SINE (Alu)

KNTC1

Promoter

2

CP068266.2:122 521 590

324

SINE (Alu)

RSRC2

Intron

2

CP068266.2:124 855 294

308

SINE (Alu)

SCARB1

Intron

2

CP068266.2:126 414 081

330

SINE (Alu)

LINC02825

Intron

2

CP068266.2:126 429 324

326

SINE (Alu)

LINC02825

Intron

2

CP068266.2:126 723 341

318

SINE (Alu)

LINC02824

Intron

2

CP068266.2:127 938 348

319

SINE (Alu)

LINC00508

Intron

2

CP068266.2:132 986 417

124

SINE (Alu)

ZNF605

Intron

2

CP068266.2:132 990 676

259

LTR (ERV1)

ZNF605

Intron

1

CP068266.2:943 694

322

SINE (Alu)

RAD52

Intron

2

CP068267.2:2 838 941

123

SINE (Alu)

KCNQ1

Intron

2

CP068267.2:4 795 490

332

SINE (Alu)

MMP26

Intron

2

CP068267.2:4 952 227

232

SINE (Alu)

MMP26

Intron

2

CP068267.2:5 010 999

301

SINE (Alu)

MMP26

Intron

2

CP068267.2:7 389 915

328

SINE (Alu)

SYT9

Intron

2

CP068267.2:7 466 060

322

SINE (Alu)

SYT9

Intron

2

CP068267.2:7 649 825

321

SINE (Alu)

LOC105376535

Promoter

2

CP068267.2:7 649 825

321

SINE (Alu)

PPFIBP2

Intron

2

CP068267.2:8 949 899

319

SINE (Alu)

DENND2B

Intron

2

CP068267.2:9 857 725

325

SINE (Alu)

SBF2-AS1

Intron

2

CP068267.2:14 422 370

315

SINE (Alu)

RRAS2

Intron

2

CP068267.2:16 096 394

322

SINE (Alu)

SOX6

Intron

2

CP068267.2:17 004 792

124

Retroposon (SVA)

PLEKHA7

Intron

2

CP068267.2:17 004 795

253

Retroposon (SVA)

PLEKHA7

Intron

2

CP068267.2:17 272 181

312

SINE (Alu)

PIK3C2A

Intron

2

CP068267.2:22 361 771

123

LINE (L1)

ANO5

Intron

2

CP068267.2:22 364 248

1 119

LINE (L1)

ANO5

Intron

1

CP068267.2:25 682 675

343

SINE (Alu)

LINC02699

Intron

2

CP068267.2:26 412 603

299

SINE (Alu)

ANO3

Intron

2

CP068267.2:27 776 457

330

LTR (ERV1)

BDNF-AS

Intron

2

CP068267.2:31 266 976

315

SINE (Alu)

DCDC1

Intron

2

CP068267.2:33 652 002

321

SINE (Alu)

KIAA1549L

Intron

2

CP068267.2:33 790 935

317

SINE (Alu)

KIAA1549L

Intron

2

CP068267.2:34 364 873

324

SINE (Alu)

ABTB2

Intron

2

CP068267.2:36 284 959

76

Retroposon (SVA)

LDLRAD3

Intron

2

CP068267.2:41 292 029

312

LTR (ERV1)

LRRC4C

Intron

2

CP068267.2:47 253 984

174

Retroposon (SVA)

CSTPP1

Intron

2

CP068267.2:47 950 030

291

SINE (Alu)

NUP160

Intron

2

CP068267.2:49 811 499

300

SINE (Alu)

GRM5P1

Intron

2

CP068267.2:58 991 318

330

SINE (Alu)

LOC283194

Intron

2

CP068267.2:60 485 034

78

LINE (L1)

MS4A13

Intron

2

CP068267.2:63 882 702

258

LINE (L1)

MARK2

Intron

2

CP068267.2:74 199 847

262

SINE (Alu)

P4HA3

Intron

2

CP068267.2:75 339 541

77

Retroposon (SVA)

RPS3

Intron

2

CP068267.2:77 212 142

313

SINE (Alu)

GDPD4

Intron

2

CP068267.2:78 812 746

73

Retroposon (SVA)

TENM4

Intron

2

CP068267.2:79 061 406

55

LTR (ERVL)

TENM4

Intron

2

CP068267.2:89 743 813

56

LINE (L1)

LOC642414

Intron

1

CP068267.2:96 295 863

337

SINE (Alu)

MAML2

Intron

2

CP068267.2:96 505 971

317

SINE (Alu)

JRKL-AS1

Intron

2

CP068267.2:99 867 914

326

SINE (Alu)

CNTN5

Intron

2

CP068267.2:101 555 768

326

SINE (Alu)

TRPC6

Intron

2

CP068267.2:102 479 727

220

SINE (Alu)

LOC124902740

Intron

2

CP068267.2:104 919 973

321

SINE (Alu)

CASP4LP

Intron

2

CP068267.2:106 732 179

292

SINE (Alu)

GUCY1A2

Intron

2

CP068267.2:110 116 231

329

SINE (Alu)

ZC3H12C

Intron

2

CP068267.2:114 530 381

71

SINE (Alu)

NXPE2

Intron

2

CP068267.2:118 715 549

133

SINE (Alu)

LOC105369519

Intron

2

CP068267.2:130 127 233

449

Retroposon (SVA)

APLP2

Intron

1

CP068267.2:130 214 060

127

LTR (ERVL)

ST14

Intron

2

CP068267.2:473 330

320

SINE (Alu)

ANO9

Intron

2

CP068268.2:3 530 702

314

SINE (Alu)

LOC105376360

Intron

2

CP068268.2:4 863 983

71

LINE (L1)

AKR1E2

Intron

2

CP068268.2:6 056 097

479

Retroposon (SVA)

IL2RA

Intron

2

CP068268.2:6 229 202

313

SINE (Alu)

PFKFB3

Intron

2

CP068268.2:9 873 493

325

SINE (Alu)

LINC02663

Intron

2

CP068268.2:10 462 177

321

SINE (Alu)

CELF2-DT

Intron

2

CP068268.2:10 778 281

170

SINE (Alu)

CELF2

Intron

2

CP068268.2:11 954 252

322

SINE (Alu)

UPF2

Intron

2

CP068268.2:14 722 876

64

LINE (L1)

FAM107B

Intron

2

CP068268.2:25 217 221

334

SINE (Alu)

GPR158

Intron

2

CP068268.2:25 961 851

320

SINE (Alu)

MYO3A

Intron

2

CP068268.2:26 090 720

316

SINE (Alu)

MYO3A

Intron

2

CP068268.2:26 503 688

303

SINE (Alu)

APBB1IP

Intron

2

CP068268.2:27 326 370

448

Retroposon (SVA)

ODAD2P1

Intron

2

CP068268.2:29 454 890

569

LINE (L1)

SVIL-AS1

Intron

2

CP068268.2:29 760 714

173

SINE (Alu)

SVIL

Intron

2

CP068268.2:30 638 183

125

SINE (Alu)

LYZL2

Intron

2

CP068268.2:34 285 274

315

SINE (Alu)

PARD3

Intron

2

CP068268.2:37 665 828

300

SINE (Alu)

LOC102724533

Intron

2

CP068268.2:43 632 105

324

SINE (Alu)

LOC105378269

Promoter

2

CP068268.2:47 533 855

322

SINE (Alu)

SHLD2P1

Intron

2

CP068268.2:49 919 167

314

SINE (Alu)

VSTM4

Intron

2

CP068268.2:53 450 889

81

LTR (ERVL)

LOC105378305

Intron

2

CP068268.2:55 607 393

312

SINE (Alu)

PCDH15

Intron

2

CP068268.2:59 611 491

317

SINE (Alu)

BICC1

Intron

2

CP068268.2:60 550 872

127

Retroposon (SVA)

SLC16A9

Intron

2

CP068268.2:62 840 679

169

SINE (Alu)

ARID5B

Intron

2

CP068268.2:66 534 377

326

SINE (Alu)

LINC01515

Intron

2

CP068268.2:67 440 301

327

SINE (Alu)

CTNNA3

Intron

2

CP068268.2:69 393 576

314

SINE (Alu)

SLC25A16

Intron

2

CP068268.2:70 106 721

316

SINE (Alu)

HKDC1

Intron

2

CP068268.2:71 715 465

316

SINE (Alu)

SGPL1

Intron

2

CP068268.2:72 303 748

327

SINE (Alu)

CDH23

Intron

2

CP068268.2:76 207 675

48

Retroposon (SVA)

ZNF503-AS1

Intron

2

CP068268.2:85 102 012

321

SINE (Alu)

LRIT2

Intron

2

CP068268.2:86 896 322

309

SINE (Alu)

GRID1

Intron

2

CP068268.2:87 790 483

326

SINE (Alu)

BMPR1A

Intron

2

CP068268.2:88 939 111

319

SINE (Alu)

LOC105378414

Intron

2

CP068268.2:91 338 874

313

SINE (Alu)

LINC02653

Intron

2

CP068268.2:91 351 314

317

SINE (Alu)

LINC02653

Intron

2

CP068268.2:95 704 117

395

LINE (L1)

CYP2C19

Intron

2

CP068268.2:96 787 855

315

SINE (Alu)

CC2D2B

Intron

2

CP068268.2:99 145 741

328

SINE (Alu)

LOXL4

Intron

2

CP068268.2:99 427 122

153

SINE (Alu)

HPSE2

Intron

2

CP068268.2:100 722 705

223

Retroposon (SVA)

ABCC2

Intron

2

CP068268.2:102 771 351

303

SINE (Alu)

ARMH3

Intron

2

CP068268.2:102 861 010

322

SINE (Alu)

ARMH3

Intron

2

CP068268.2:102 921 216

141

Retroposon (SVA)

ARMH3

Intron

2

CP068268.2:104 225 372

312

SINE (Alu)

PCGF6

Intron

2

CP068268.2:105 985 932

312

SINE (Alu)

SORCS3

Intron

2

CP068268.2:107 018 348

141

SINE (Alu)

LOC105378469

Intron

2

CP068268.2:111 134 875

308

SINE (Alu)

MXI1

Intron

2

CP068268.2:113 205 090

311

SINE (Alu)

GUCY2GP

Intron

2

CP068268.2:116 140 819

319

SINE (Alu)

ATRNL1

Intron

2

CP068268.2:119 905 013

320

SINE (Alu)

LINC03036

Intron

2

CP068268.2:121 742 443

62

LTR (ERV1)

WDR11-DT

Intron

2

CP068268.2:123 679 345

333

SINE (Alu)

LOC124900290

Intron

2

CP068268.2:128 286 207

314

SINE (Alu)

DOCK1

Intron

2

CP068268.2:131 025 575

97

LINE (L1)

C10orf143

Intron

2

CP068269.2:6 295 538

711

LINE (L1)

LOC107987046

Intron

2

CP068269.2:6 885 377

312

SINE (Alu)

KDM4C

Intron

2

CP068269.2:9 145 491

320

SINE (Alu)

PTPRD

Intron

2

CP068269.2:10 470 785

314

SINE (Alu)

PTPRD

Intron

2

CP068269.2:14 642 209

105

LINE (L1)

ZDHHC21

Intron

2

CP068269.2:19 378 518

95

SINE (Alu)

DENND4C

Intron

2

CP068269.2:28 208 722

312

SINE (Alu)

LINGO2

Intron

2

CP068269.2:32 330 851

226

SINE (Alu)

LOC107987059

Intron

2

CP068269.2:35 038 160

63

LINE (L1)

LOC105376025

Intron

2

CP068269.2:36 668 044

309

SINE (Alu)

MELK

Intron

2

CP068269.2:37 214 016

317

SINE (Alu)

ZCCHC7

Intron

2

CP068269.2:81 331 129

317

SINE (Alu)

TJP2

Intron

2

CP068269.2:82 950 586

315

SINE (Alu)

TRPM3

Intron

2

CP068269.2:82 997 613

313

SINE (Alu)

TRPM3

Intron

2

CP068269.2:83 123 285

132

SINE (Alu)

TRPM3

Intron

2

CP068269.2:84 767 523

313

SINE (Alu)

TMC1

Intron

2

CP068269.2:84 951 633

333

SINE (Alu)

TMC1

Intron

2

CP068269.2:84 957 291

97

Retroposon (SVA)

TMC1

Intron

2

CP068269.2:88 222 516

455

Retroposon (SVA)

PCSK5

Intron

2

CP068269.2:97 437 226

307

SINE (Alu)

LOC105376119

Intron

2

CP068269.2:99 911 985

299

Retroposon (SVA)

LOC124902198

Intron

2

CP068269.2:102 597 254

306

SINE (Alu)

LINC01508

Intron

2

CP068269.2:104 997 505

135

Retroposon (SVA)

ANKRD19P

Intron

1

CP068269.2:106 136 047

250

SINE (Alu)

LOC124902216

Intron

2

CP068269.2:106 667 387

318

SINE (Alu)

LOC107987100

Intron

2

CP068269.2:112 443 781

81

SINE (Alu)

INVS

Intron

2

CP068269.2:117 159 335

727

Retroposon (SVA)

CT70

Intron

2

CP068269.2:122 734 404

330

SINE (Alu)

SVEP1

Intron

2

CP068269.2:124 311 519

315

SINE (Alu)

SUSD1

Intron

2

CP068269.2:124 686 226

173

Retroposon (SVA)

KIAA1958

Intron

1

CP068269.2:129 033 833

203

Retroposon (SVA)

LOC105376239

Intron

2

CP068269.2:141 137 397

133

SINE (Alu)

PHYHD1

Intron

2

CP068269.2:144 740 730

2 980

LINE (L1)

CFAP77

Intron

2

CP068269.2:146 110 857

225

Retroposon (SVA)

VAV2

Intron

2

CP068270.2:3 524 026

328

SINE (Alu)

CSMD1

Intron

2

CP068270.2:4 117 692

328

SINE (Alu)

CSMD1

Intron

2

CP068270.2:4 348 133

94

LINE (L1)

CSMD1

Intron

2

CP068270.2:5 725 123

602

LINE (L1)

LOC105377795

Intron

2

CP068270.2:10 137 743

312

SINE (Alu)

TNKS

Intron

2

CP068270.2:10 681 511

321

SINE (Alu)

ERI1

Intron

2

CP068270.2:14 383 880

321

SINE (Alu)

SGCZ

Intron

2

CP068270.2:15 957 256

323

SINE (Alu)

TUSC3

Intron

2

CP068270.2:17 675 688

328

SINE (Alu)

MTMR7

Intron

2

CP068270.2:28 963 145

129

LINE (L1)

EXTL3

Promoter

2

CP068270.2:28 963 145

129

LINE (L1)

EXTL3

Intron

2

CP068270.2:32 796 257

197

LINE (L1)

NRG1

Intron

2

CP068270.2:34 175 409

284

SINE (Alu)

LOC105379364

Intron

2

CP068270.2:39 283 681

313

SINE (Alu)

ADAM9

Intron

2

CP068270.2:42 456 695

309

SINE (Alu)

PLAT

Intron

2

CP068270.2:48 487 704

322

SINE (Alu)

LOC107986941

Intron

2

CP068270.2:52 201 376

318

SINE (Alu)

PCMTD1

Intron

2

CP068270.2:54 436 680

313

SINE (Alu)

LYPLA1-TCEA1

Intron

2

CP068270.2:55 866 231

315

SINE (Alu)

XKR4

Intron

2

CP068270.2:60 716 533

315

SINE (Alu)

LOC105375864

Intron

2

CP068270.2:61 037 962

321

SINE (Alu)

RAB2A

Intron

2

CP068270.2:62 855 980

322

SINE (Alu)

NKAIN3

Intron

2

CP068270.2:66 088 341

73

Retroposon (SVA)

MTFR1

Intron

2

CP068270.2:66 658 372

174

Retroposon (SVA)

LOC102724687

Intron

2

CP068270.2:74 052 032

168

SINE (Alu)

STAU2

Intron

2

CP068270.2:74 150 241

341

SINE (Alu)

STAU2

Intron

2

CP068270.2:80 270 047

319

SINE (Alu)

LOC101927040

Intron

2

CP068270.2:87 184 808

320

SINE (Alu)

PSKH2

Intron

2

CP068270.2:96 503 803

232

SINE (Alu)

CFAP418-AS1

Intron

1

CP068270.2:96 770 262

325

SINE (Alu)

CFAP418-AS1

Intron

2

CP068270.2:99 578 329

325

SINE (Alu)

STK3

Intron

2

CP068270.2:102 509

314

SINE (Alu)

LOC124902052

Intron

2

CP068270.2:104 056 682

244

Retroposon (SVA)

MAILR

Intron

2

CP068270.2:106 786 176

317

SINE (Alu)

ZFPM2

Intron

2

CP068270.2:107 627 313

325

SINE (Alu)

OXR1

Intron

2

CP068270.2:107 844 447

325

SINE (Alu)

OXR1

Intron

2

CP068270.2:110 217 896

320

SINE (Alu)

TRHR

Intron

2

CP068270.2:110 465 612

299

SINE (Alu)

ENY2

Intron

2

CP068270.2:117 806 203

719

Retroposon (SVA)

EIF3H

Intron

2

CP068270.2:119 563 257

310

SINE (Alu)

SAMD12

Intron

2

CP068270.2:120 917 422

232

SINE (Alu)

TAF2

Intron

2

CP068270.2:121 797 875

317

SINE (Alu)

SNTB1

Intron

2

CP068270.2:122 849 197

321

SINE (Alu)

LOC124906789

Intron

2

CP068270.2:126 458 371

317

SINE (Alu)

NSMCE2

Intron

2

CP068270.2:126 461 172

353

SINE (Alu)

NSMCE2

Intron

2

CP068270.2:132 253 249

316

SINE (Alu)

LOC105375760

Intron

1

CP068270.2:132 282 389

312

SINE (Alu)

LOC105375760

Intron

2

CP068270.2:133 053 370

323

SINE (Alu)

EFR3A

Intron

2

CP068270.2:135 985 556

112

LINE (CR1)

LOC101927845

Intron

2

CP068270.2:137 820 678

330

SINE (Alu)

LINC02055

Intron

2

CP068271.2:2 382 169

77

Retroposon (SVA)

SNX8

Intron

2

CP068271.2:2 537 743

337

SINE (Alu)

CHST12

Intron

2

CP068271.2:2 674 652

107

SINE (Alu)

IQCE

Intron

2

CP068271.2:6 790 042

96

Retroposon (SVA)

LOC124901583

Intron

2

CP068271.2:8 616 432

317

SINE (Alu)

NXPH1

Intron

2

CP068271.2:15 262 062

60

LTR (ERV1)

AGMO

Intron

2

CP068271.2:18 412 782

280

SINE (Alu)

HDAC9

Intron

2

CP068271.2:20 330 965

326

SINE (Alu)

MACC1

Intron

2

CP068271.2:23 765 393

312

SINE (Alu)

CCDC126

Intron

2

CP068271.2:23 776 953

125

Retroposon (SVA)

CCDC126

Intron

2

CP068271.2:26 303 990

118

LINE (L1)

NFE2L3

Intron

2

CP068271.2:27 880 171

336

SINE (Alu)

TAX1BP1

Intron

2

CP068271.2:33 334 398

1 407

LINE (L1)

BBS9

Intron

2

CP068271.2:42 668 469

321

SINE (Alu)

LOC105375250

Promoter

2

CP068271.2:43 532 806

252

SINE (Alu)

HECW1

Intron

2

CP068271.2:45 911 340

323

SINE (Alu)

SEPTIN7P2

Intron

2

CP068271.2:48 018 072

323

SINE (Alu)

PKD1L1

Intron

2

CP068271.2:56 180 856

324

SINE (Alu)

PSPH

Intron

2

CP068271.2:56 181 463

61

SINE (Alu)

PSPH

Intron

1

CP068271.2:75 037 348

270

Retroposon (SVA)

METTL27

Intron

1

CP068271.2:76 011 796

192

SINE (Alu)

GTF2IRD2

Intron

2

CP068271.2:77 895 813

299

SINE (Alu)

LINC03009

Intron

2

CP068271.2:79 582 547

322

SINE (Alu)

MAGI2

Intron

2

CP068271.2:82 045 199

330

SINE (Alu)

SEMA3C

Intron

2

CP068271.2:83 623 827

326

SINE (Alu)

CACNA2D1

Intron

2

CP068271.2:84 052 406

314

SINE (Alu)

PCLO

Intron

2

CP068271.2:85 626 331

317

SINE (Alu)

SEMA3A

Intron

2

CP068271.2:90 466 173

340

SINE (Alu)

ZNF804B

Intron

2

CP068271.2:91 992 920

206

Retroposon (SVA)

CDK14

Intron

2

CP068271.2:96 385 565

327

SINE (Alu)

PPP1R9A

Intron

2

CP068271.2:100 478 927

331

SINE (Alu)

MYH16

Intron

2

CP068271.2:102 681 693

2 780

Retroposon (SVA)

COL26A1

Intron

2

CP068271.2:103 867 427

84

SINE (Alu)

POLR2J3-UPK3BL2

Intron

2

CP068271.2:104 162 973

331

SINE (Alu)

FAM185A

Intron

2

CP068271.2:106 264 512

103

SINE (Alu)

LOC101927902

Intron

2

CP068271.2:106 569 809

323

SINE (Alu)

SRPK2

Intron

2

CP068271.2:109 361 785

120

SINE (Alu)

LAMB4

Intron

2

CP068271.2:112 163 030

96

LINE (L1)

IMMP2L

Intron

2

CP068271.2:115 628 405

311

SINE (Alu)

FOXP2

Intron

2

CP068271.2:118 437 551

269

SINE (Alu)

ST7

Intron

2

CP068271.2:119 031 590

319

SINE (Alu)

LOC105375469

Intron

2

CP068271.2:119 758 768

316

SINE (Alu)

LOC105375471

Intron

2

CP068271.2:124 871 255

308

SINE (Alu)

NDUFA5

Intron

2

CP068271.2:127 551 027

333

SINE (Alu)

LOC105375488

Promoter

2

CP068271.2:127 551 027

333

SINE (Alu)

LOC105375488

Intron

2

CP068271.2:132 541 792

144

SINE (Alu)

MKLN1

Intron

2

CP068271.2:133 487 650

328

SINE (Alu)

PLXNA4

Intron

2

CP068271.2:135 973 338

419

LINE (L1)

BPGM

Intron

2

CP068271.2:136 047 537

322

SINE (Alu)

LOC124901750

Intron

2

CP068271.2:136 812 007

329

SINE (Alu)

CNOT4

Intron

2

CP068271.2:138 459 440

311

SINE (Alu)

LOC349160

Intron

2

CP068271.2:141 676 142

216

Retroposon (SVA)

SLC37A3

Intron

1

CP068271.2:141 951 322

316

SINE (Alu)

DENND2A

Intron

2

CP068271.2:142 627 896

318

SINE (Alu)

TMEM178B

Intron

2

CP068271.2:145 832 167

61

LTR (ERV1)

TPK1

Intron

2

CP068271.2:145 866 395

139

LINE (L1)

TPK1

Promoter

2

CP068271.2:145 866 395

139

LINE (L1)

TPK1

Intron

2

CP068271.2:149 591 887

134

SINE (Alu)

CNTNAP2

Intron

2

CP068271.2:149 923 445

134

SINE (Alu)

CUL1

Intron

2

CP068271.2:151 116 815

318

SINE (Alu)

ACTR3C

Intron

2

CP068271.2:151 376 999

50

Retroposon (SVA)

ACTR3C

Intron

2

CP068271.2:151 854 516

89

SINE (Alu)

LOC124901774

Intron

2

CP068271.2:152 200 515

52

LTR (ERVK)

ATG9B

Intron

2

CP068271.2:152 533 889

143

SINE (Alu)

NUB1

Intron

2

CP068271.2:155 444 348

311

SINE (Alu)

DPP6

Intron

2

CP068271.2:155 766 178

328

SINE (Alu)

DPP6

Intron

2

CP068271.2:160 034 958

126

SINE (Alu)

ESYT2

Intron

2

CP068272.2:2 841 255

303

SINE (Alu)

SERPINB6

Promoter

2

CP068272.2:5 217 730

320

SINE (Alu)

FARS2

Intron

2

CP068272.2:7 310 938

81

LTR (ERV1)

LOC102724234

Intron

2

CP068272.2:9 939 215

312

SINE (Alu)

OFCC1

Intron

2

CP068272.2:10 902 109

135

SINE (Alu)

ELOVL2

Intron

2

CP068272.2:13 394 505

329

SINE (Alu)

RPS4XP7

Promoter

2

CP068272.2:19 027 502

323

SINE (Alu)

LOC101928519

Intron

2

CP068272.2:20 041 064

314

SINE (Alu)

MBOAT1

Intron

2

CP068272.2:28 879 239

100

SINE (Alu)

ZNF311

Intron

2

CP068272.2:30 680 491

159

LTR (ERV1)

LINC00243

Intron

2

CP068272.2:31 324 347

313

SINE (Alu)

HCG26

Promoter

2

CP068272.2:31 351 684

173

SINE (Alu)

MICB

Intron

2

CP068272.2:32 343 351

293

SINE (Alu)

LOC124905397

Promoter

2

CP068272.2:32 412 812

309

SINE (Alu)

HLA-DRB1

Intron

2

CP068272.2:32 415 894

307

SINE (Alu)

HLA-DRB1

Intron

1

CP068272.2:32 423 285

1 113

LTR (ERVK)

HLA-DRB1

Promoter

2

CP068272.2:33 068 433

330

SINE (Alu)

LOC105375022

Promoter

2

CP068272.2:34 221 295

49

Retroposon (SVA)

RPS10-NUDT3

Intron

1

CP068272.2:34 229 514

329

SINE (Alu)

RPS10-NUDT3

Intron

2

CP068272.2:38 746 505

50

LTR (ERV1)

DNAH8

Intron

2

CP068272.2:38 778 843

313

SINE (Alu)

DNAH8

Intron

2

CP068272.2:42 430 462

160

SINE (Alu)

UBR2

Intron

2

CP068272.2:42 896 868

322

SINE (Alu)

KLC4

Intron

2

CP068272.2:43 181 094

66

LINE (L1)

ZNF318

Intron

2

CP068272.2:43 757 249

316

SINE (Alu)

LINC01512

Intron

2

CP068272.2:43 979 896

980

Retroposon (SVA)

TMEM63B

Intron

2

CP068272.2:45 127 498

323

SINE (Alu)

SUPT3H

Intron

2

CP068272.2:45 944 958

329

SINE (Alu)

CLIC5

Intron

2

CP068272.2:51 717 831

6 031

LINE (L1)

PKHD1

Intron

2

CP068272.2:53 584 806

282

SINE (Alu)

LOC124901334

Intron

2

CP068272.2:53 623 893

312

SINE (Alu)

LOC124901333

Intron

2

CP068272.2:54 692 012

140

SINE (Alu)

FAM83B

Intron

2

CP068272.2:56 735 169

2 587

Retroposon (SVA)

DST

Intron

2

CP068272.2:62 724 632

132

SINE (Alu)

KHDRBS2

Intron

2

CP068272.2:65 272 540

191

SINE (Alu)

EYS

Intron

2

CP068272.2:65 457 749

91

LINE (L1)

EYS

Intron

2

CP068272.2:65 763 014

327

SINE (Alu)

EYS

Intron

2

CP068272.2:66 607 855

308

SINE (Alu)

EYS

Intron

2

CP068272.2:68 497 032

322

SINE (Alu)

LOC105377842

Intron

2

CP068272.2:70 300 658

75

Retroposon (SVA)

ADGRB3

Intron

2

CP068272.2:76 425 221

316

SINE (Alu)

COX7A2

Intron

2

CP068272.2:76 483 634

49

SINE (Alu)

FILIP1

Intron

2

CP068272.2:78 387 367

308

SINE (Alu)

LOC101928570

Intron

2

CP068272.2:78 831 815

304

SINE (Alu)

MEI4

Intron

2

CP068272.2:78 884 409

320

SINE (Alu)

MEI4

Intron

2

CP068272.2:79 310 806

294

SINE (Alu)

LOC105377865

Intron

2

CP068272.2:81 765 649

321

SINE (Alu)

LOC648934

Promoter

2

CP068272.2:81 765 649

321

SINE (Alu)

LOC112267962

Intron

2

CP068272.2:83 853 159

57

LINE (L1)

LOC105377876

Intron

2

CP068272.2:84 185 928

312

SINE (Alu)

UBE3D

Intron

2

CP068272.2:93 892 171

325

SINE (Alu)

LINC02531

Intron

2

CP068272.2:97 741 692

322

SINE (Alu)

FHL5

Intron

2

CP068272.2:102 897 809

329

SINE (Alu)

GRIK2

Intron

2

CP068272.2:102 946 406

323

SINE (Alu)

GRIK2

Intron

2

CP068272.2:105 950 363

311

SINE (Alu)

HACE1

Intron

2

CP068272.2:111 483 984

310

SINE (Alu)

METTL24

Intron

2

CP068272.2:111 583 183

328

SINE (Alu)

DDO

Intron

2

CP068272.2:115 410 352

316

SINE (Alu)

HDAC2-AS2

Intron

2

CP068272.2:117 613 663

317

SINE (Alu)

DSE

Intron

2

CP068272.2:117 706 712

318

SINE (Alu)

TRAPPC3L

Intron

2

CP068272.2:119 490 091

293

SINE (Alu)

SLC35F1

Intron

2

CP068272.2:123 028 931

102

LINE (L2)

LOC105377979

Intron

2

CP068272.2:123 847 137

319

SINE (Alu)

PKIB

Intron

2

CP068272.2:125 365 522

321

SINE (Alu)

NKAIN2

Intron

2

CP068272.2:130 609 939

311

SINE (Alu)

LAMA2

Intron

2

CP068272.2:130 700 750

327

SINE (Alu)

LAMA2

Intron

2

CP068272.2:131 488 431

283

SINE (Alu)

SAMD3

Intron

2

CP068272.2:134 599 473

178

SINE (Alu)

EYA4

Intron

2

CP068272.2:137 234 155

278

SINE (Alu)

PDE7B

Intron

2

CP068272.2:137 339 890

70

SINE (Alu)

PDE7B

Intron

1

CP068272.2:140 470 041

314

SINE (Alu)

LOC102723690

Intron

2

CP068272.2:146 690 740

97

LINE (L1)

EPM2A

Intron

2

CP068272.2:149 677 325

283

SINE (Alu)

SASH1

Intron

2

CP068272.2:150 773 902

135

SINE (Alu)

GINM1

Intron

2

CP068272.2:151 002 840

302

SINE (Alu)

PCMT1

Intron

2

CP068272.2:154 514 334

316

SINE (Alu)

LOC105378066

Intron

2

CP068272.2:155 567 174

274

SINE (Alu)

LOC105378067

Promoter

2

CP068272.2:155 567 174

274

SINE (Alu)

LOC105378067

Intron

2

CP068272.2:162 273 904

317

SINE (Alu)

LOC105378093

Intron

2

CP068272.2:163 617 006

324

SINE (Alu)

PRKN

Intron

2

CP068272.2:163 955 920

357

SINE (Alu)

PRKN

Intron

2

CP068272.2:169 930 528

324

SINE (Alu)

SMOC2

Intron

2

CP068273.2:1 499 358

314

SINE (Alu)

SDHAP3

Intron

2

CP068273.2:1 857 114

310

SINE (Alu)

LOC124901165

Intron

2

CP068273.2:5 207 254

313

SINE (Alu)

ADAMTS16

Intron

2

CP068273.2:13 357 466

56

LINE (L1)

LOC105374660

Intron

2

CP068273.2:13 792 771

314

SINE (Alu)

DNAH5

Intron

2

CP068273.2:16 655 697

310

SINE (Alu)

MYO10

Intron

2

CP068273.2:20 930 728

316

SINE (Alu)

LINC02241

Intron

2

CP068273.2:31 791 020

306

SINE (Alu)

PDZD2

Intron

2

CP068273.2:34 235 086

321

SINE (Alu)

C1QTNF3-AMACR

Intron

2

CP068273.2:34 965 018

336

SINE (Alu)

RAI14

Intron

2

CP068273.2:37 812 852

623

Retroposon (SVA)

WDR70

Intron

2

CP068273.2:37 937 889

281

SINE (Alu)

WDR70

Intron

2

CP068273.2:39 542 380

330

SINE (Alu)

C9

Intron

2

CP068273.2:43 646 516

328

SINE (Alu)

CCL28

Intron

2

CP068273.2:43 769 164

68

LTR (ERV1)

LOC124900190

Intron

2

CP068273.2:43 770 523

328

SINE (Alu)

LOC124900190

Intron

2

CP068273.2:60 039 177

314

SINE (Alu)

PDE4D

Intron

2

CP068273.2:66 799 023

345

Retroposon (SVA)

ERBIN

Intron

2

CP068273.2:69 790 093

651

LINE (L1)

LOC107984116

Intron

2

CP068273.2:70 611 004

329

SINE (Alu)

LOC124906514

Intron

2

CP068273.2:77 524 589

123

Retroposon (SVA)

AGGF1

Intron

1

CP068273.2:78 760 230

285

SINE (Alu)

AP3B1

Intron

2

CP068273.2:80 202 146

305

SINE (Alu)

CMYA5

Intron

2

CP068273.2:83 675 994

305

SINE (Alu)

XRCC4

Intron

2

CP068273.2:86 116 881

345

SINE (Alu)

LOC105379061

Intron

2

CP068273.2:87 782 566

245

SINE (Alu)

RASA1

Intron

2

CP068273.2:88 585 051

328

SINE (Alu)

LOC105379070

Intron

2

CP068273.2:91 188 443

152

SINE (Alu)

ADGRV1

Intron

2

CP068273.2:96 508 940

325

SINE (Alu)

CAST

Intron

2

CP068273.2:107 349 776

325

SINE (Alu)

LINC01950

Intron

2

CP068273.2:111 869 884

319

LINE (L1)

CAMK4

Intron

2

CP068273.2:111 960 940

189

SINE (Alu)

CAMK4

Intron

2

CP068273.2:118 013 084

308

SINE (Alu)

LINC00992

Intron

2

CP068273.2:120 200 303

322

SINE (Alu)

LOC348958

Promoter

2

CP068273.2:121 151 743

69

LINE (L1)

PRR16

Intron

2

CP068273.2:123 455 518

319

SINE (Alu)

SNX24

Intron

2

CP068273.2:123 753 516

522

LINE (L1)

TUBB8P11

Intron

2

CP068273.2:126 220 892

859

LINE (L1)

LOC124901056

Intron

2

CP068273.2:137 581 808

233

LINE (L2)

SPOCK1

Intron

2

CP068273.2:137 712 676

288

SINE (Alu)

SPOCK1

Intron

2

CP068273.2:138 669 937

65

LTR (ERV1)

BRD8

Intron

2

CP068273.2:139 924 858

295

SINE (Alu)

SPATA24

Intron

2

CP068273.2:150 072 540

323

SINE (Alu)

CSNK1A1

Intron

2

CP068273.2:156 439 730

2 480

LINE (L1)

SGCD

Intron

2

CP068273.2:159 694 188

322

SINE (Alu)

RNF145

Intron

2

CP068273.2:161 129 583

344

SINE (Alu)

ATP10B

Intron

2

CP068273.2:171 270 546

84

SINE (Alu)

KCNIP1

Intron

2

CP068273.2:176 849 119

127

Retroposon (SVA)

SIMC1

Intron

2

CP068273.2:180 746 045

172

SINE (Alu)

RASGEF1C

Intron

2

CP068274.2:1 306 582

317

SINE (Alu)

MAEA

Intron

2

CP068274.2:1 318 269

132

SINE (Alu)

MAEA

Intron

2

CP068274.2:8 373 198

159

SINE (Alu)

ACOX3

Intron

2

CP068274.2:9 950 437

246

SINE (Alu)

SLC2A9

Intron

2

CP068274.2:9 954 701

315

SINE (Alu)

SLC2A9

Intron

2

CP068274.2:10 696 742

224

SINE (Alu)

CLNK

Intron

2

CP068274.2:14 827 303

5 443

LINE (L1)

LINC00504

Intron

2

CP068274.2:15 773 378

488

Retroposon (SVA)

CD38

Intron

1

CP068274.2:16 374 994

72

Retroposon (SVA)

LOC105374505

Intron

1

CP068274.2:19 347 230

325

SINE (Alu)

LINC02438

Intron

2

CP068274.2:20 388 569

987

LINE (L1)

SLIT2

Intron

2

CP068274.2:25 221 331

141

LTR (ERV1)

PI4K2B

Intron

2

CP068274.2:28 304 766

312

SINE (Alu)

LOC105374557

Intron

2

CP068274.2:37 478 028

84

Retroposon (SVA)

C4orf19

Intron

2

CP068274.2:37 501 700

111

LINE (L1)

C4orf19

Intron

2

CP068274.2:38 999 419

279

SINE (Alu)

TMEM156

Intron

2

CP068274.2:39 378 562

320

SINE (Alu)

KLB

Intron

2

CP068274.2:39 675 502

162

SINE (Alu)

UBE2K

Intron

1

CP068274.2:47 461 846

314

SINE (Alu)

ATP10D

Intron

2

CP068274.2:47 509 431

333

SINE (Alu)

ATP10D

Intron

2

CP068274.2:56 472 567

311

SINE (Alu)

SCFD2

Intron

2

CP068274.2:57 036 762

318

SINE (Alu)

LNX1

Intron

2

CP068274.2:59 545 987

195

SINE (Alu)

CRACD

Intron

2

CP068274.2:67 788 030

291

SINE (Alu)

TECRL

Intron

2

CP068274.2:72 534 968

321

SINE (Alu)

UGT2B7

Intron

2

CP068274.2:72 690 165

266

LINE (L1)

TUBB8P11

Intron

2

CP068274.2:73 581 961

186

LINE (L1)

CSN3

Promoter

2

CP068274.2:73 581 961

186

LINE (L1)

CSN3

Intron

2

CP068274.2:75 446 974

318

SINE (Alu)

NPFFR2

Intron

2

CP068274.2:79 443 320

315

SINE (Alu)

ART3

Intron

2

CP068274.2:80 258 529

49

Retroposon (SVA)

LOC105377294

Intron

2

CP068274.2:83 303 273

6 044

LINE (L1)

ANTXR2

Intron

2

CP068274.2:83 711 817

329

SINE (Alu)

CFAP299

Intron

2

CP068274.2:85 588 188

303

SINE (Alu)

LOC105377308

Intron

2

CP068274.2:85 803 947

318

SINE (Alu)

LOC105377310

Intron

2

CP068274.2:88 878 813

314

SINE (Alu)

ARHGAP24

Intron

2

CP068274.2:88 913 506

72

LINE (L1)

ARHGAP24

Intron

2

CP068274.2:90 440 361

330

SINE (Alu)

AFF1

Intron

2

CP068274.2:90 637 537

142

SINE (Alu)

HSD17B13

Intron

2

CP068274.2:92 091 985

319

SINE (Alu)

FAM13A

Intron

2

CP068274.2:95 798 087

318

SINE (Alu)

GRID2

Intron

2

CP068274.2:98 264 406

317

SINE (Alu)

BMPR1B

Intron

2

CP068274.2:99 966 112

318

SINE (Alu)

LINC02267

Intron

2

CP068274.2:104 434 814

318

SINE (Alu)

PPP3CA

Intron

2

CP068274.2:105 736 350

1 885

LINE (L1)

LOC105377621

Intron

2

CP068274.2:106 266 332

2 511

LINE (L1)

SLC9B1

Intron

2

CP068274.2:107 284 829

623

LTR (ERV1)

LINC02503

Intron

2

CP068274.2:107 856 593

318

SINE (Alu)

CXXC4-AS1

Intron

2

CP068274.2:112 879 734

322

SINE (Alu)

MCUB

Intron

2

CP068274.2:122 158 905

317

SINE (Alu)

SYNPO2

Intron

2

CP068274.2:124 831 133

180

SINE (Alu)

LOC107986310

Intron

2

CP068274.2:137 323 693

306

SINE (Alu)

PABPC4L

Intron

2

CP068274.2:152 561 796

338

SINE (Alu)

LINC02355

Intron

2

CP068274.2:153 984 117

97

Retroposon (SVA)

LRBA

Intron

1

CP068274.2:154 538 658

126

Retroposon (SVA)

SH3D19

Intron

2

CP068274.2:154 743 431

838

LINE (L1)

FHIP1A

Intron

2

CP068274.2:157 304 320

318

SINE (Alu)

LOC101927947

Intron

2

CP068274.2:157 545 206

74

LTR (ERVL)

LOC101927947

Intron

1

CP068274.2:158 831 227

111

SINE (Alu)

LOC105377505

Intron

2

CP068274.2:163 055 733

335

SINE (Alu)

LOC107986324

Intron

2

CP068274.2:164 757 919

59

LINE (L1)

FSTL5

Intron

2

CP068274.2:164 785 720

310

SINE (Alu)

FSTL5

Intron

2

CP068274.2:166 928 648

314

SINE (Alu)

MARCHF1

Intron

2

CP068274.2:167 460 677

278

SINE (Alu)

MARCHF1

Intron

2

CP068274.2:168 615 612

322

SINE (Alu)

KLHL2

Intron

2

CP068274.2:173 273 624

299

SINE (Alu)

LOC105377530

Intron

2

CP068274.2:176 567 723

315

SINE (Alu)

GALNT7

Intron

2

CP068274.2:177 630 266

311

SINE (Alu)

CEP44

Intron

2

CP068274.2:177 952 805

326

SINE (Alu)

LOC105377549

Promoter

2

CP068274.2:177 952 805

326

SINE (Alu)

LOC105377549

Intron

2

CP068274.2:180 879 933

64

LTR (ERV1)

AGA-DT

Intron

2

CP068274.2:184 287 164

225

Retroposon (SVA)

LOC105377567

Intron

2

CP068274.2:188 577 957

309

SINE (Alu)

SNX25

Intron

2

CP068274.2:188 771 002

325

SINE (Alu)

CFAP96

Intron

2

CP068274.2:188 804 271

289

SINE (Alu)

CCDC110

Intron

2

CP068274.2:192 726 791

319

SINE (Alu)

LOC105377614

Intron

2

CP068275.2:2 584 962

314

SINE (Alu)

CNTN4

Intron

2

CP068275.2:7 563 823

311

SINE (Alu)

GRM7

Intron

2

CP068275.2:12 308 635

308

SINE (Alu)

PPARG

Intron

2

CP068275.2:12 655 079

175

Retroposon (SVA)

RAF1

Intron

1

CP068275.2:14 043 590

332

SINE (Alu)

TPRXL

Intron

2

CP068275.2:17 692 738

322

SINE (Alu)

TBC1D5

Intron

2

CP068275.2:17 706 756

146

Retroposon (SVA)

TBC1D5

Intron

2

CP068275.2:24 782 410

321

SINE (Alu)

LOC107986070

Intron

2

CP068275.2:24 950 583

2 953

LINE (L1)

RARB

Intron

2

CP068275.2:25 252 739

71

LINE (L1)

RARB

Intron

2

CP068275.2:25 351 236

318

SINE (Alu)

RARB

Intron

2

CP068275.2:28 128 297

324

SINE (Alu)

LOC105377008

Intron

2

CP068275.2:29 475 804

159

LTR (ERV1)

RBMS3

Intron

2

CP068275.2:29 581 547

321

SINE (Alu)

RBMS3

Intron

2

CP068275.2:33 513 436

876

LINE (L1)

CLASP2

Intron

2

CP068275.2:34 318 450

6 091

LINE (L1)

LINC01811

Intron

2

CP068275.2:36 454 965

138

LTR (ERV1)

STAC

Intron

2

CP068275.2:38 119 250

134

SINE (Alu)

DLEC1

Intron

2

CP068275.2:42 872 482

326

SINE (Alu)

ACKR2

Intron

2

CP068275.2:45 150 159

315

SINE (Alu)

CDCP1

Intron

2

CP068275.2:45 517 532

315

SINE (Alu)

LARS2

Intron

2

CP068275.2:47 760 449

317

SINE (Alu)

SMARCC1

Intron

2

CP068275.2:49 943 579

325

SINE (Alu)

MON1A

Intron

2

CP068275.2:50 054 726

268

SINE (Alu)

RBM6

Intron

2

CP068275.2:50 341 806

97

Retroposon (SVA)

HYAL1

Intron

1

CP068275.2:50 871 697

331

SINE (Alu)

DOCK3

Intron

2

CP068275.2:51 280 054

77

Retroposon (SVA)

DOCK3

Intron

2

CP068275.2:59 950 161

108

SINE (Alu)

FHIT

Intron

2

CP068275.2:61 714 843

280

Retroposon (SVA)

PTPRG

Intron

2

CP068275.2:61 714 843

177

Retroposon (SVA)

PTPRG

Intron

2

CP068275.2:66 961 938

131

LINE (L1)

LOC105377144

Intron

2

CP068275.2:67 489 000

97

Retroposon (SVA)

SUCLG2

Intron

2

CP068275.2:68 878 080

290

SINE (Alu)

TAFA4

Intron

2

CP068275.2:70 402 714

331

SINE (Alu)

SAMMSON

Intron

2

CP068275.2:71 229 921

301

SINE (Alu)

FOXP1

Intron

2

CP068275.2:78 864 620

88

LINE (L1)

ROBO1

Intron

2

CP068275.2:82 376 966

107

LTR (ERV1)

LINC02008

Intron

2

CP068275.2:86 130 106

331

SINE (Alu)

CADM2

Intron

2

CP068275.2:114 228 328

339

SINE (Alu)

LOC105374039

Intron

2

CP068275.2:114 926 706

49

LINE (L1)

SLC9C1

Intron

2

CP068275.2:115 469 172

3 449

Retroposon (SVA)

LINC02042

Intron

2

CP068275.2:127 575 229

323

SINE (Alu)

ITGB5

Intron

2

CP068275.2:127 816 677

324

SINE (Alu)

SLC12A8

Intron

2

CP068275.2:128 503 270

307

SINE (Alu)

TUBB8P11

Intron

2

CP068275.2:132 210 422

306

SINE (Alu)

IFT122

Intron

2

CP068275.2:135 215 099

403

Retroposon (SVA)

DNAJC13

Intron

2

CP068275.2:135 215 488

49

Retroposon (SVA)

DNAJC13

Intron

2

CP068275.2:145 488 419

314

SINE (Alu)

TRPC1

Intron

2

CP068275.2:146 222 567

314

SINE (Alu)

SLC9A9

Intron

2

CP068275.2:146 290 331

107

SINE (Alu)

SLC9A9

Intron

2

CP068275.2:152 131 587

97

Retroposon (SVA)

TM4SF1-AS1

Intron

2

CP068275.2:152 131 792

253

Retroposon (SVA)

TM4SF1-AS1

Intron

2

CP068275.2:161 020 241

337

SINE (Alu)

RSRC1

Intron

2

CP068275.2:163 183 722

176

SINE (Alu)

SMC4

Intron

2

CP068275.2:171 951 917

309

SINE (Alu)

MECOM

Intron

2

CP068275.2:177 480 228

321

SINE (Alu)

NAALADL2

Intron

2

CP068275.2:181 924 701

49

Retroposon (SVA)

PIK3CA-DT

Intron

1

CP068275.2:181 925 311

67

Retroposon (SVA)

PIK3CA-DT

Intron

2

CP068275.2:190 057 582

328

SINE (Alu)

MASP1

Intron

2

CP068275.2:191 982 178

321

SINE (Alu)

TPRG1

Intron

2

CP068275.2:933 241

315

SINE (Alu)

CNTN6

Intron

2

CP068276.2:1 198 288

306

SINE (Alu)

SNTG2

Intron

2

CP068276.2:1 468 423

329

SINE (Alu)

TPO

Intron

2

CP068276.2:15 057 246

330

SINE (Alu)

NBAS

Intron

2

CP068276.2:24 290 233

122

SINE (Alu)

ITSN2

Intron

2

CP068276.2:26 286 406

328

SINE (Alu)

HADHB

Intron

2

CP068276.2:42 610 850

302

Retroposon (SVA)

MTA3

Intron

2

CP068276.2:43 303 387

357

Retroposon (SVA)

THADA

Intron

2

CP068276.2:44 594 241

447

Retroposon (SVA)

CAMKMT

Intron

1

CP068276.2:44 604 010

316

SINE (Alu)

CAMKMT

Intron

2

CP068276.2:48 560 591

2 989

Retroposon (SVA)

STON1-GTF2A1L

Intron

2

CP068276.2:50 018 018

132

SINE (Alu)

NRXN1

Intron

2

CP068276.2:53 161 221

64

LINE (L1)

LOC105369165

Intron

2

CP068276.2:54 460 543

248

SINE (Alu)

SPTBN1

Promoter

2

CP068276.2:54 460 543

248

SINE (Alu)

SPTBN1

Intron

2

CP068276.2:63 730 049

351

Retroposon (SVA)

WDPCP

Intron

1

CP068276.2:65 116 309

304

SINE (Alu)

RAB1A

Intron

2

CP068276.2:69 529 836

317

SINE (Alu)

AAK1

Intron

2

CP068276.2:74 292 982

327

SINE (Alu)

SLC4A5

Intron

2

CP068276.2:80 542 014

269

SINE (Alu)

CTNNA2

Intron

2

CP068276.2:87 918 976

449

LINE (L1)

RGPD2

Intron

2

CP068276.2:102 198 725

315

SINE (Alu)

MAP4K4

Intron

2

CP068276.2:106 297 452

316

SINE (Alu)

NCK2

Intron

2

CP068276.2:107 771 785

320

SINE (Alu)

LINC01789

Intron

2

CP068276.2:111 709 562

329

SINE (Alu)

MIR4435-2HG

Intron

2

CP068276.2:112 385 913

325

SINE (Alu)

MERTK

Intron

2

CP068276.2:113 889 028

316

SINE (Alu)

ZNG1B

Intron

2

CP068276.2:128 316 576

326

SINE (Alu)

AMMECR1L

Intron

2

CP068276.2:131 521 062

319

SINE (Alu)

FAM168B

Intron

2

CP068276.2:133 554 576

319

SINE (Alu)

NCKAP5

Intron

2

CP068276.2:141 222 232

328

SINE (Alu)

LRP1B

Intron

2

CP068276.2:141 752 388

57

LINE (L1)

LRP1B

Intron

2

CP068276.2:148 342 955

299

SINE (Alu)

ACVR2A

Intron

2

CP068276.2:152 612 938

173

Retroposon (SVA)

STAM2

Intron

1

CP068276.2:153 756 655

321

SINE (Alu)

GALNT13

Intron

2

CP068276.2:156 904 280

49

Retroposon (SVA)

GPD2

Intron

1

CP068276.2:156 904 280

49

Retroposon (SVA)

GPD2

Intron

1

CP068276.2:158 030 254

324

SINE (Alu)

ACVR1C

Intron

2

CP068276.2:158 882 881

329

SINE (Alu)

CCDC148

Intron

2

CP068276.2:159 710 998

156

SINE (Alu)

WDSUB1

Intron

2

CP068276.2:169 505 778

321

SINE (Alu)

ABCB11

Intron

2

CP068276.2:173 186 817

116

Retroposon (SVA)

PDK1

Intron

2

CP068276.2:174 714 646

320

SINE (Alu)

OLA1

Intron

2

CP068276.2:175 359 957

318

SINE (Alu)

CHN1

Intron

2

CP068276.2:177 936 293

333

SINE (Alu)

AGPS

Intron

2

CP068276.2:177 969 023

340

SINE (Alu)

AGPS

Intron

2

CP068276.2:188 787 065

302

SINE (Alu)

GULP1

Intron

2

CP068276.2:191 887 362

477

Retroposon (SVA)

MYO1B

Intron

2

CP068276.2:195 638 179

322

SINE (Alu)

LOC105376755

Intron

2

CP068276.2:195 693 163

329

SINE (Alu)

LOC105376755

Intron

2

CP068276.2:198 382 298

311

SINE (Alu)

PLCL1

Intron

2

CP068276.2:198 513 690

137

SINE (Alu)

PLCL1

Intron

2

CP068276.2:208 081 694

320

SINE (Alu)

METTL21A

Intron

2

CP068276.2:209 066 826

324

SINE (Alu)

LOC101927960

Intron

2

CP068276.2:212 323 899

314

SINE (Alu)

ERBB4

Intron

2

CP068276.2:215 319 683

76

Retroposon (SVA)

SNHG31

Intron

2

CP068276.2:215 369 783

157

SINE (Alu)

SNHG31

Intron

2

CP068276.2:216 169 155

326

SINE (Alu)

LOC102724861

Intron

2

CP068276.2:216 174 633

132

SINE (Alu)

LOC102724861

Intron

1

CP068276.2:217 798 533

304

SINE (Alu)

DIRC3-AS1

Intron

2

CP068276.2:219 198 425

327

SINE (Alu)

TTLL4

Intron

2

CP068276.2:220 421 760

313

SINE (Alu)

LOC105373890

Intron

2

CP068276.2:223 381 038

2 557

Retroposon (SVA)

ACSL3

Intron

1

CP068276.2:223 415 723

316

SINE (Alu)

ACSL3

Intron

2

CP068276.2:233 687 454

148

SINE (Alu)

INPP5D

Intron

2

CP068276.2:241 825 383

148

LTR (ERVL)

SEPTIN2

Intron

1

CP068277.2:6 326 450

176

SINE (Alu)

CAMTA1

Promoter

2

CP068277.2:6 326 450

176

SINE (Alu)

CAMTA1

Intron

2

CP068277.2:11 959 745

2 289

Retroposon (SVA)

VPS13D

Intron

2

CP068277.2:17 172 541

321

SINE (Alu)

PADI4

Intron

2

CP068277.2:18 080

317

SINE (Alu)

LOC127239154

Intron

2

CP068277.2:20 992 774

315

SINE (Alu)

EIF4G3

Intron

2

CP068277.2:28 942 968

322

SINE (Alu)

EPB41

Intron

2

CP068277.2:38 352 286

74

SINE (Alu)

LOC105378657

Intron

2

CP068277.2:39 079 394

316

SINE (Alu)

MACF1

Intron

2

CP068277.2:41 795 200

326

SINE (Alu)

HIVEP3

Intron

2

CP068277.2:41 888 856

1 497

LINE (L1)

HIVEP3

Intron

2

CP068277.2:42 148 108

312

SINE (Alu)

FOXJ3

Intron

2

CP068277.2:43 262 333

329

SINE (Alu)

SZT2

Intron

2

CP068277.2:50 326 587

337

SINE (Alu)

FAF1

Intron

2

CP068277.2:56 301 172

313

SINE (Alu)

LOC124905710

Intron

2

CP068277.2:57 484 949

211

SINE (Alu)

DAB1

Intron

2

CP068277.2:58 151 162

270

SINE (Alu)

DAB1

Intron

2

CP068277.2:62 068 645

318

SINE (Alu)

RPS15AP7

Promoter

2

CP068277.2:65 467 967

316

SINE (Alu)

LEPR

Intron

2

CP068277.2:69 941 365

331

SINE (Alu)

LRRC7

Intron

2

CP068277.2:72 052 222

316

SINE (Alu)

NEGR1

Intron

2

CP068277.2:74 568 856

3 708

LINE (L1)

CRYZ

Intron

2

CP068277.2:77 006 803

307

SINE (Alu)

PIGK

Intron

2

CP068277.2:77 195 456

126

SINE (MIR)

AK5

Intron

1

CP068277.2:78 774 660

319

SINE (Alu)

ADGRL4

Intron

2

CP068277.2:81 683 953

322

SINE (Alu)

ADGRL2

Intron

2

CP068277.2:82 984 353

1 737

LINE (L1)

LINC01362

Intron

2

CP068277.2:89 748 218

269

SINE (Alu)

LRRC8D

Intron

2

CP068277.2:90 378 503

318

SINE (Alu)

LINC02787

Intron

2

CP068277.2:97 099 968

324

SINE (Alu)

DPYD-AS1

Intron

2

CP068277.2:98 993 317

299

SINE (Alu)

PLPPR5-AS1

Intron

2

CP068277.2:99 773 243

142

SINE (Alu)

LOC124904230

Intron

2

CP068277.2:107 637 360

308

SINE (Alu)

VAV3

Intron

2

CP068277.2:109 210 173

76

Retroposon (SVA)

ELAPOR1

Intron

2

CP068277.2:111 310 361

61

LINE (L1)

CHIA

Intron

2

CP068277.2:111 575 341

295

SINE (Alu)

RAP1A

Intron

2

CP068277.2:112 860 458

314

SINE (Alu)

LINC01356

Intron

2

CP068277.2:114 512 654

310

SINE (Alu)

TRIM33

Intron

2

CP068277.2:117 439 076

173

Retroposon (SVA)

MAN1A2

Intron

2

CP068277.2:117 439 865

79

Retroposon (SVA)

MAN1A2

Intron

2

CP068277.2:117 557 840

222

SINE (Alu)

VPS25P1

Promoter

2

CP068277.2:149 352 606

277

SINE (Alu)

ANP32E

Intron

2

CP068277.2:150 113 934

336

SINE (Alu)

ANXA9

Intron

2

CP068277.2:155 092 707

320

SINE (Alu)

ARHGEF2

Intron

2

CP068277.2:160 560 569

359

Retroposon (SVA)

TRE-TTC4-2

Promoter

1

CP068277.2:161 611 471

312

SINE (Alu)

NOS1AP

Intron

2

CP068277.2:161 637 228

319

SINE (Alu)

NOS1AP

Intron

2

CP068277.2:162 592 388

333

SINE (Alu)

RGS5

Intron

2

CP068277.2:165 238 275

2 352

Retroposon (SVA)

UCK2

Intron

2

CP068277.2:166 450 102

62

LTR (ERVL)

STYXL2

Intron

2

CP068277.2:167 095 119

317

SINE (Alu)

MPZL1

Intron

2

CP068277.2:168 612 294

126

LINE (L1)

NME7

Intron

2

CP068277.2:173 333 814

325

SINE (Alu)

RC3H1

Intron

2

CP068277.2:178 877 824

352

SINE (Alu)

AXDND1

Intron

2

CP068277.2:180 974 636

322

SINE (Alu)

CACNA1E

Intron

2

CP068277.2:180 987 562

282

SINE (Alu)

CACNA1E

Intron

2

CP068277.2:181 811 277

323

SINE (Alu)

RGSL1

Intron

2

CP068277.2:196 178 912

323

SINE (Alu)

CFHR4

Intron

2

CP068277.2:196 304 551

286

SINE (Alu)

F13B

Intron

2

CP068277.2:197 760 067

319

SINE (Alu)

LOC105371677

Intron

2

CP068277.2:198 619 298

320

SINE (Alu)

LINC02789

Intron

2

CP068277.2:203 533 894

329

SINE (Alu)

PLEKHA6

Intron

2

CP068277.2:203 640 460

329

SINE (Alu)

PLEKHA6

Intron

2

CP068277.2:205 230 886

313

SINE (Alu)

SLC26A9-AS1

Intron

2

CP068277.2:209 360 883

315

SINE (Alu)

SYT14

Intron

2

CP068277.2:210 357 660

118

Retroposon (SVA)

KCNH1

Intron

2

CP068277.2:211 543 946

1 482

Retroposon (SVA)

PPP2R5A

Intron

2

CP068277.2:211 713 734

84

SINE (Alu)

LINC02771

Intron

2

CP068277.2:211 837 436

317

SINE (Alu)

ATF3

Intron

2

CP068277.2:212 046 263

2 410

Retroposon (SVA)

TATDN3

Intron

2

CP068277.2:215 252 250

169

SINE (Alu)

USH2A

Intron

2

CP068277.2:216 822 048

301

SINE (Alu)

GPATCH2

Intron

2

CP068277.2:216 985 245

312

SINE (Alu)

SPATA17

Intron

2

CP068277.2:221 722 301

171

Retroposon (SVA)

LOC124905750

Intron

2

CP068277.2:221 931 096

328

SINE (Alu)

AIDA

Intron

2

CP068277.2:225 007 009

178

SINE (Alu)

EPHX1

Intron

2

CP068277.2:226 463 590

324

SINE (Alu)

CDC42BPA

Intron

2

CP068277.2:226 503 106

135

SINE (Alu)

CDC42BPA

Intron

2

CP068277.2:230 329 881

303

SINE (Alu)

TTC13

Intron

2

CP068277.2:232 592 710

314

SINE (Alu)

PCNX2

Intron

2

CP068277.2:234 701 066

85

Retroposon (SVA)

ARID4B

Intron

2

CP068277.2:235 287 889

335

SINE (Alu)

LOC105373215

Promoter

2

CP068277.2:235 831 713

323

SINE (Alu)

EDARADD

Intron

2

CP068277.2:236 817 294

319

SINE (Alu)

RYR2

Intron

2

CP068277.2:239 030 423

312

SINE (Alu)

CHRM3

Intron

2

CP068277.2:239 865 254

323

SINE (Alu)

FMN2

Intron

2

CP068277.2:241 560 354

6 041

LINE (L1)

PLD5

Intron

2

CP068277.2:245 477 474

318

SINE (Alu)

SMYD3

Intron

2

CP068277.2:245 665 518

331

SINE (Alu)

SMYD3

Intron

2

CP068277.2:245 851 672

317

SINE (Alu)

SMYD3

Intron

2

CP068277.2:246 075 792

266

SINE (Alu)

CNST

Intron

2

CP068277.2:246 295 973

300

SINE (Alu)

AHCTF1

Intron

2

2.2 Class II Elements

2.2.1 Distribution

A) Unique class II TE insertions occurrences on the genome. B) Gene annotations of class II TE insertions on the genome. A single TE may be annotated more than once.

  1. Unique class II TE insertions occurrences on the genome. B) Gene annotations of class II TE insertions on the genome. A single TE may be annotated more than once.

2.2.2 Class II TEs on gene sequences

Click to show table with 5 rows.

Position

Length

Type

Gene

Annotation

Occurrences

CP068258.2:1 634 241

142

DNA (hAT)

SIRPB1

Intron

2

CP068258.2:55 000 758

56

DNA (hAT)

TSHZ2

Intron

1

CP068268.2:29 625 323

54

DNA (TcMar)

SVIL

Intron

2

CP068270.2:3 478 778

181

DNA (hAT)

CSMD1

Intron

2

CP068273.2:178 323 193

93

DNA (TcMar)

FAM153A

Intron

1

3 TE Deletions

It is common to find deletions whose coordinates match those of a TE sequence in the reference genome. This section presents them.

  • 1 395 TE deletions have been found, adding up to 2 736 occurrences among cases.
  • These deletions have a mean prevalence per sample of 2.0 ± 0.19 (median of 2).
  • The deletion length is in the range of 304-331 bp for 50% of them (Q2-Q3, both included), and the maximum length found was 8 487, for a deleted ERVK sequence.

3.1 Allele frequency

  • The mean AF for deletions is 0.79 ± 0.25 (median of 1).
  • With 700 (700 of which has passed the stringent filtering) deletions appearing in a homozygous state in all patients (Fig. 7). On the other hand, 30 deletions were genotyped as 0/0 on all cases, and have not been included in the rest of this section.
Allele frequency is shown for TE deletions for each chromosome. Each dot marks a different deletion.

Allele frequency is shown for TE deletions for each chromosome. Each dot marks a different deletion.

4 Enrichment analysis

This section shows the result of enrichment analysis on the genes affected with TE insertions.

4.1 Gene Ontology

4.1.0.1 Annotation group: MF (Molecular Function)

Barplot for enriched categories. Values on top have lower p values.

Barplot for enriched categories. Values on top have lower p values.

The category with lowest p value is Pyrin domain binding (1.336382e-11), and the highest (among the lowest 10) is guanyl-nucleotide exchange factor activity (0.01491454). The ratio is 1116039049.19, i.e., they differ in 9 orders of magnitude.

Click to show/hide table with 100 rows for categories with the lowest p value.

ID

Description

GeneRatio

BgRatio

pvalue

p.adjust

qvalue

Count

GeneRatioCalc

GO:0032090

Pyrin domain binding

10/689

11/20758

1.626e-14

1.336e-11

1.22e-11

10

0.01451

GO:0046703

natural killer cell lectin-like receptor binding

8/689

27/20758

1.795e-06

0.0004127

0.0003769

8

0.01161

GO:0042609

CD4 receptor binding

6/689

13/20758

1.84e-06

0.0004127

0.0003769

6

0.008708

GO:0005216

ion channel activity

37/689

480/20758

2.008e-06

0.0004127

0.0003769

37

0.0537

GO:0035091

phosphatidylinositol binding

23/689

288/20758

0.0001007

0.01454

0.01327

23

0.03338

GO:0003779

actin binding

32/689

471/20758

0.0001132

0.01454

0.01327

32

0.04644

GO:0022836

gated channel activity

27/689

372/20758

0.0001316

0.01454

0.01327

27

0.03919

GO:0140303

intramembrane lipid transporter activity

8/689

47/20758

0.0001415

0.01454

0.01327

8

0.01161

GO:0140327

flippase activity

5/689

17/20758

0.0001762

0.01491

0.01362

5

0.007257

GO:0005085

guanyl-nucleotide exchange factor activity

20/689

245/20758

0.0002095

0.01491

0.01362

20

0.02903

GO:0004791

thioredoxin-disulfide reductase activity

4/689

10/20758

0.0002154

0.01491

0.01362

4

0.005806

GO:0005096

GTPase activator activity

23/689

304/20758

0.0002235

0.01491

0.01362

23

0.03338

GO:0005516

calmodulin binding

18/689

210/20758

0.0002359

0.01491

0.01362

18

0.02612

GO:0005262

calcium channel activity

13/689

126/20758

0.0002898

0.01702

0.01554

13

0.01887

GO:0005261

cation channel activity

25/689

360/20758

0.0004467

0.02341

0.02137

25

0.03628

GO:0046873

metal ion transmembrane transporter activity

30/689

466/20758

0.0004556

0.02341

0.02137

30

0.04354

GO:0005543

phospholipid binding

31/689

495/20758

0.0005858

0.02833

0.02586

31

0.04499

GO:0047134

protein-disulfide reductase (NAD(P)) activity

4/689

13/20758

0.0006771

0.03034

0.0277

4

0.005806

GO:0005200

structural constituent of cytoskeleton

12/689

121/20758

0.0007014

0.03034

0.0277

12

0.01742

GO:0005319

lipid transporter activity

15/689

176/20758

0.0008057

0.03197

0.02919

15

0.02177

GO:0015085

calcium ion transmembrane transporter activity

13/689

142/20758

0.0009122

0.03197

0.02919

13

0.01887

GO:0070679

inositol 1,4,5 trisphosphate binding

4/689

14/20758

0.0009232

0.03197

0.02919

4

0.005806

GO:0140333

glycerophospholipid flippase activity

4/689

14/20758

0.0009232

0.03197

0.02919

4

0.005806

GO:0042608

T cell receptor binding

6/689

35/20758

0.0009333

0.03197

0.02919

6

0.008708

GO:0016668

oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor

4/689

15/20758

0.001226

0.04031

0.03681

4

0.005806

GO:0030247

polysaccharide binding

6/689

38/20758

0.001459

0.04613

0.04212

6

0.008708

GO:0005548

phospholipid transporter activity

8/689

67/20758

0.001641

0.04997

0.04563

8

0.01161

GO:0051959

dynein light intermediate chain binding

5/689

27/20758

0.001747

0.05128

0.04682

5

0.007257

GO:0045296

cadherin binding

23/689

357/20758

0.001997

0.05556

0.05073

23

0.03338

GO:0015385

sodium:proton antiporter activity

4/689

17/20758

0.002028

0.05556

0.05073

4

0.005806

GO:0140326

ATPase-coupled intramembrane lipid transporter activity

5/689

29/20758

0.002433

0.06451

0.0589

5

0.007257

GO:0030165

PDZ domain binding

9/689

89/20758

0.002773

0.07124

0.06505

9

0.01306

GO:0004675

transmembrane receptor protein serine/threonine kinase activity

4/689

19/20758

0.003133

0.07626

0.06963

4

0.005806

GO:0033038

bitter taste receptor activity

6/689

44/20758

0.003154

0.07626

0.06963

6

0.008708

GO:0005546

phosphatidylinositol-4,5-bisphosphate binding

9/689

92/20758

0.003473

0.08157

0.07448

9

0.01306

GO:0022839

ion gated channel activity

6/689

48/20758

0.004904

0.112

0.1022

6

0.008708

GO:0005229

intracellular calcium activated chloride channel activity

4/689

22/20758

0.005464

0.1152

0.1052

4

0.005806

GO:0051139

metal cation:proton antiporter activity

4/689

22/20758

0.005464

0.1152

0.1052

4

0.005806

GO:0061778

intracellular chloride channel activity

4/689

22/20758

0.005464

0.1152

0.1052

4

0.005806

GO:1902936

phosphatidylinositol bisphosphate binding

10/689

118/20758

0.005954

0.1204

0.11

10

0.01451

GO:0008527

taste receptor activity

6/689

50/20758

0.006007

0.1204

0.11

6

0.008708

GO:0017124

SH3 domain binding

11/689

139/20758

0.006703

0.1312

0.1198

11

0.01597

GO:0097110

scaffold protein binding

7/689

69/20758

0.007823

0.1463

0.1336

7

0.01016

GO:0016798

hydrolase activity, acting on glycosyl bonds

11/689

142/20758

0.00783

0.1463

0.1336

11

0.01597

GO:0098632

cell-cell adhesion mediator activity

6/689

54/20758

0.008737

0.1596

0.1457

6

0.008708

GO:0015079

potassium ion transmembrane transporter activity

12/689

166/20758

0.009551

0.1707

0.1558

12

0.01742

GO:0008381

mechanosensitive ion channel activity

4/689

26/20758

0.01006

0.1759

0.1606

4

0.005806

GO:0008066

glutamate receptor activity

4/689

27/20758

0.0115

0.197

0.1799

4

0.005806

GO:0015631

tubulin binding

22/689

392/20758

0.012

0.2013

0.1838

22

0.03193

GO:0034236

protein kinase A catalytic subunit binding

3/689

15/20758

0.01229

0.2021

0.1845

3

0.004354

GO:0042578

phosphoric ester hydrolase activity

22/689

396/20758

0.01336

0.2154

0.1967

22

0.03193

GO:0004674

protein serine/threonine kinase activity

25/689

470/20758

0.01448

0.2207

0.2015

25

0.03628

GO:0008559

ABC-type xenobiotic transporter activity

3/689

16/20758

0.01476

0.2207

0.2015

3

0.004354

GO:0015386

potassium:proton antiporter activity

3/689

16/20758

0.01476

0.2207

0.2015

3

0.004354

GO:0140328

floppase activity

3/689

16/20758

0.01476

0.2207

0.2015

3

0.004354

GO:0098631

cell adhesion mediator activity

6/689

64/20758

0.01924

0.2806

0.2562

6

0.008708

GO:0019905

syntaxin binding

7/689

83/20758

0.02031

0.2806

0.2562

7

0.01016

GO:0015278

calcium-release channel activity

3/689

18/20758

0.02048

0.2806

0.2562

3

0.004354

GO:0017128

phospholipid scramblase activity

3/689

18/20758

0.02048

0.2806

0.2562

3

0.004354

GO:0030275

LRR domain binding

3/689

18/20758

0.02048

0.2806

0.2562

3

0.004354

GO:0004553

hydrolase activity, hydrolyzing O-glycosyl compounds

8/689

104/20758

0.02246

0.2912

0.2659

8

0.01161

GO:0005154

epidermal growth factor receptor binding

4/689

33/20758

0.02296

0.2912

0.2659

4

0.005806

GO:0005451

monovalent cation:proton antiporter activity

4/689

33/20758

0.02296

0.2912

0.2659

4

0.005806

GO:0015299

solute:proton antiporter activity

4/689

33/20758

0.02296

0.2912

0.2659

4

0.005806

GO:0032395

MHC class II receptor activity

6/689

67/20758

0.02359

0.2912

0.2659

6

0.008708

GO:0004970

ionotropic glutamate receptor activity

3/689

19/20758

0.02374

0.2912

0.2659

3

0.004354

GO:0008569

minus-end-directed microtubule motor activity

3/689

19/20758

0.02374

0.2912

0.2659

3

0.004354

GO:0098960

postsynaptic neurotransmitter receptor activity

7/689

86/20758

0.02417

0.2921

0.2667

7

0.01016

GO:0140828

metal cation:monoatomic cation antiporter activity

4/689

34/20758

0.02535

0.302

0.2758

4

0.005806

GO:1901981

phosphatidylinositol phosphate binding

12/689

191/20758

0.02601

0.3054

0.2789

12

0.01742

GO:0051015

actin filament binding

14/689

236/20758

0.02647

0.3065

0.2798

14

0.02032

GO:0052745

inositol phosphate phosphatase activity

3/689

20/20758

0.02725

0.3111

0.284

3

0.004354

GO:0000287

magnesium ion binding

14/689

240/20758

0.02995

0.3111

0.284

14

0.02032

GO:0015276

ligand-gated ion channel activity

10/689

152/20758

0.0305

0.3111

0.284

10

0.01451

GO:0022834

ligand-gated channel activity

10/689

152/20758

0.0305

0.3111

0.284

10

0.01451

GO:0044325

transmembrane transporter binding

9/689

131/20758

0.03069

0.3111

0.284

9

0.01306

GO:0015103

inorganic anion transmembrane transporter activity

11/689

174/20758

0.03094

0.3111

0.284

11

0.01597

GO:0005001

transmembrane receptor protein tyrosine phosphatase activity

3/689

21/20758

0.03103

0.3111

0.284

3

0.004354

GO:0015125

bile acid transmembrane transporter activity

3/689

21/20758

0.03103

0.3111

0.284

3

0.004354

GO:0019198

transmembrane receptor protein phosphatase activity

3/689

21/20758

0.03103

0.3111

0.284

3

0.004354

GO:0022821

solute:potassium antiporter activity

3/689

21/20758

0.03103

0.3111

0.284

3

0.004354

GO:0051010

microtubule plus-end binding

3/689

21/20758

0.03103

0.3111

0.284

3

0.004354

GO:0106310

protein serine kinase activity

20/689

383/20758

0.03157

0.3127

0.2855

20

0.02903

GO:0051117

ATPase binding

7/689

92/20758

0.03334

0.3232

0.2951

7

0.01016

GO:0045505

dynein intermediate chain binding

4/689

37/20758

0.03342

0.3232

0.2951

4

0.005806

GO:0043178

alcohol binding

7/689

93/20758

0.03506

0.3318

0.3029

7

0.01016

GO:0051018

protein kinase A binding

5/689

55/20758

0.03535

0.3318

0.3029

5

0.007257

GO:0022843

voltage-gated cation channel activity

10/689

156/20758

0.03552

0.3318

0.3029

10

0.01451

GO:0005544

calcium-dependent phospholipid binding

5/689

56/20758

0.0378

0.3491

0.3188

5

0.007257

GO:0019211

phosphatase activator activity

3/689

23/20758

0.03936

0.3552

0.3243

3

0.004354

GO:1990404

NAD+-protein ADP-ribosyltransferase activity

3/689

23/20758

0.03936

0.3552

0.3243

3

0.004354

GO:0008429

phosphatidylethanolamine binding

2/689

10/20758

0.04149

0.3552

0.3243

2

0.002903

GO:0015279

store-operated calcium channel activity

2/689

10/20758

0.04149

0.3552

0.3243

2

0.002903

GO:0017002

activin receptor activity

2/689

10/20758

0.04149

0.3552

0.3243

2

0.002903

GO:0050656

3'-phosphoadenosine 5'-phosphosulfate binding

2/689

10/20758

0.04149

0.3552

0.3243

2

0.002903

GO:0052743

inositol tetrakisphosphate phosphatase activity

2/689

10/20758

0.04149

0.3552

0.3243

2

0.002903

GO:0071949

FAD binding

4/689

40/20758

0.04282

0.3594

0.3281

4

0.005806

GO:0016791

phosphatase activity

16/689

300/20758

0.04322

0.3594

0.3281

16

0.02322

GO:0008143

poly(A) binding

3/689

24/20758

0.04391

0.3594

0.3281

3

0.004354

GO:0015035

protein-disulfide reductase activity

4/689

41/20758

0.04625

0.3594

0.3281

4

0.005806

[1] “”


These plots show connections among categories:

Enrichment map. Categories are connected by genes in common. Dot size indicates number of genes, dot color indicates adjusted _p_ value.

Enrichment map. Categories are connected by genes in common. Dot size indicates number of genes, dot color indicates adjusted p value.

Gene-concept network. Categories (brown dots) are linked by genes in common (gray dots). The size of category dots indicates gene count.

Gene-concept network. Categories (brown dots) are linked by genes in common (gray dots). The size of category dots indicates gene count.

4.1.0.2 Annotation group: BP (Biological Process)

Barplot for enriched categories. Values on top have lower p values.

Barplot for enriched categories. Values on top have lower p values.

The category with lowest p value is negative regulation of defense response to virus by host (1.933222e-07), and the highest (among the lowest 10) is positive regulation by symbiont of entry into host (0.0005179149). The ratio is 2679.024, i.e., they differ in 3 orders of magnitude.

Click to show/hide table with 100 rows for categories with the lowest p value.

ID

Description

GeneRatio

BgRatio

pvalue

p.adjust

qvalue

Count

GeneRatioCalc

GO:0050689

negative regulation of defense response to virus by host

8/673

10/21069

4.425e-11

1.933e-07

1.774e-07

8

0.01189

GO:0045655

regulation of monocyte differentiation

10/673

27/21069

5.341e-09

1.167e-05

1.07e-05

10

0.01486

GO:0010975

regulation of neuron projection development

40/673

468/21069

1.827e-08

2.661e-05

2.441e-05

40

0.05944

GO:0010804

negative regulation of tumor necrosis factor-mediated signaling pathway

11/673

41/21069

4.297e-08

4.693e-05

4.306e-05

11

0.01634

GO:0030224

monocyte differentiation

11/673

43/21069

7.381e-08

6.449e-05

5.917e-05

11

0.01634

GO:0045657

positive regulation of monocyte differentiation

7/673

15/21069

1.693e-07

0.0001233

0.0001131

7

0.0104

GO:0010803

regulation of tumor necrosis factor-mediated signaling pathway

13/673

78/21069

1.049e-06

0.0005179

0.0004752

13

0.01932

GO:0050687

negative regulation of defense response to virus

9/673

35/21069

1.101e-06

0.0005179

0.0004752

9

0.01337

GO:0046598

positive regulation of viral entry into host cell

7/673

19/21069

1.185e-06

0.0005179

0.0004752

7

0.0104

GO:0075294

positive regulation by symbiont of entry into host

7/673

19/21069

1.185e-06

0.0005179

0.0004752

7

0.0104

GO:0002842

positive regulation of T cell mediated immune response to tumor cell

6/673

13/21069

1.472e-06

0.0005845

0.0005363

6

0.008915

GO:0019835

cytolysis

9/673

37/21069

1.831e-06

0.0006394

0.0005867

9

0.01337

GO:0050770

regulation of axonogenesis

19/673

168/21069

1.903e-06

0.0006394

0.0005867

19

0.02823

GO:0002491

antigen processing and presentation of endogenous peptide antigen via MHC class II

6/673

14/21069

2.506e-06

0.000782

0.0007175

6

0.008915

GO:0001960

negative regulation of cytokine-mediated signaling pathway

14/673

105/21069

6.317e-06

0.001727

0.001585

14

0.0208

GO:0002840

regulation of T cell mediated immune response to tumor cell

6/673

16/21069

6.326e-06

0.001727

0.001585

6

0.008915

GO:0032088

negative regulation of NF-kappaB transcription factor activity

15/673

121/21069

7.403e-06

0.001903

0.001746

15

0.02229

GO:0002469

myeloid dendritic cell antigen processing and presentation

6/673

17/21069

9.513e-06

0.002187

0.002007

6

0.008915

GO:0007158

neuron cell-cell adhesion

6/673

17/21069

9.513e-06

0.002187

0.002007

6

0.008915

GO:0060761

negative regulation of response to cytokine stimulus

14/673

110/21069

1.092e-05

0.002386

0.002189

14

0.0208

GO:0051056

regulation of small GTPase mediated signal transduction

27/673

343/21069

1.714e-05

0.003567

0.003272

27

0.04012

GO:0032829

regulation of CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation

6/673

19/21069

1.975e-05

0.003751

0.003441

6

0.008915

GO:0032831

positive regulation of CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation

6/673

19/21069

1.975e-05

0.003751

0.003441

6

0.008915

GO:1903902

positive regulation of viral life cycle

7/673

29/21069

2.779e-05

0.005059

0.004642

7

0.0104

GO:0043382

positive regulation of memory T cell differentiation

6/673

21/21069

3.739e-05

0.006535

0.005995

6

0.008915

GO:0046629

gamma-delta T cell activation

8/673

41/21069

3.907e-05

0.006566

0.006024

8

0.01189

GO:0007409

axonogenesis

32/673

468/21069

4.929e-05

0.007286

0.006685

32

0.04755

GO:0002361

CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation

6/673

22/21069

5.003e-05

0.007286

0.006685

6

0.008915

GO:0002836

positive regulation of response to tumor cell

6/673

22/21069

5.003e-05

0.007286

0.006685

6

0.008915

GO:0002839

positive regulation of immune response to tumor cell

6/673

22/21069

5.003e-05

0.007286

0.006685

6

0.008915

GO:0002424

T cell mediated immune response to tumor cell

6/673

24/21069

8.546e-05

0.01131

0.01038

6

0.008915

GO:0021756

striatum development

6/673

24/21069

8.546e-05

0.01131

0.01038

6

0.008915

GO:0043380

regulation of memory T cell differentiation

6/673

24/21069

8.546e-05

0.01131

0.01038

6

0.008915

GO:0071875

adrenergic receptor signaling pathway

7/673

35/21069

0.0001014

0.01303

0.01195

7

0.0104

GO:0043379

memory T cell differentiation

6/673

25/21069

0.0001094

0.01335

0.01225

6

0.008915

GO:0009595

detection of biotic stimulus

9/673

60/21069

0.0001131

0.01335

0.01225

9

0.01337

GO:0045332

phospholipid translocation

9/673

60/21069

0.0001131

0.01335

0.01225

9

0.01337

GO:0098581

detection of external biotic stimulus

8/673

48/21069

0.0001268

0.01457

0.01337

8

0.01189

GO:0090715

immunological memory formation process

6/673

26/21069

0.0001384

0.01551

0.01423

6

0.008915

GO:0002429

immune response-activating cell surface receptor signaling pathway

27/673

390/21069

0.0001534

0.01634

0.01499

27

0.04012

GO:0002757

immune response-activating signal transduction

27/673

390/21069

0.0001534

0.01634

0.01499

27

0.04012

GO:0008038

neuron recognition

8/673

50/21069

0.0001705

0.01725

0.01582

8

0.01189

GO:0002837

regulation of immune response to tumor cell

6/673

27/21069

0.0001732

0.01725

0.01582

6

0.008915

GO:0051262

protein tetramerization

12/673

108/21069

0.0001737

0.01725

0.01582

12

0.01783

GO:0034612

response to tumor necrosis factor

23/673

313/21069

0.0001973

0.01915

0.01757

23

0.03418

GO:0098543

detection of other organism

7/673

39/21069

0.0002076

0.01953

0.01792

7

0.0104

GO:0034204

lipid translocation

9/673

65/21069

0.0002122

0.01953

0.01792

9

0.01337

GO:0002834

regulation of response to tumor cell

6/673

28/21069

0.0002145

0.01953

0.01792

6

0.008915

GO:0042093

T-helper cell differentiation

10/673

80/21069

0.0002271

0.02025

0.01858

10

0.01486

GO:0034329

cell junction assembly

30/673

468/21069

0.0002592

0.02265

0.02078

30

0.04458

GO:0043280

positive regulation of cysteine-type endopeptidase activity involved in apoptotic process

14/673

147/21069

0.0002686

0.02301

0.02111

14

0.0208

GO:0002294

CD4-positive, alpha-beta T cell differentiation involved in immune response

10/673

82/21069

0.0002787

0.02342

0.02149

10

0.01486

GO:0002287

alpha-beta T cell activation involved in immune response

10/673

83/21069

0.000308

0.02455

0.02252

10

0.01486

GO:0002293

alpha-beta T cell differentiation involved in immune response

10/673

83/21069

0.000308

0.02455

0.02252

10

0.01486

GO:0002468

dendritic cell antigen processing and presentation

6/673

30/21069

0.0003203

0.02455

0.02252

6

0.008915

GO:0021544

subpallium development

6/673

30/21069

0.0003203

0.02455

0.02252

6

0.008915

GO:0090713

immunological memory process

6/673

30/21069

0.0003203

0.02455

0.02252

6

0.008915

GO:0002761

regulation of myeloid leukocyte differentiation

14/673

150/21069

0.0003309

0.02482

0.02277

14

0.0208

GO:0050691

regulation of defense response to virus by host

8/673

55/21069

0.0003361

0.02482

0.02277

8

0.01189

GO:0071625

vocalization behavior

5/673

20/21069

0.0003408

0.02482

0.02277

5

0.007429

GO:0031589

cell-substrate adhesion

27/673

411/21069

0.0003542

0.02498

0.02292

27

0.04012

GO:0007605

sensory perception of sound

15/673

169/21069

0.0003545

0.02498

0.02292

15

0.02229

GO:0007411

axon guidance

19/673

248/21069

0.0004127

0.02762

0.02534

19

0.02823

GO:0097105

presynaptic membrane assembly

4/673

12/21069

0.0004162

0.02762

0.02534

4

0.005944

GO:0071709

membrane assembly

9/673

71/21069

0.0004172

0.02762

0.02534

9

0.01337

GO:0097035

regulation of membrane lipid distribution

9/673

71/21069

0.0004172

0.02762

0.02534

9

0.01337

GO:0097485

neuron projection guidance

19/673

249/21069

0.0004338

0.02829

0.02596

19

0.02823

GO:0050905

neuromuscular process

15/673

173/21069

0.0004548

0.02922

0.02681

15

0.02229

GO:0035774

positive regulation of insulin secretion involved in cellular response to glucose stimulus

6/673

32/21069

0.000463

0.02931

0.0269

6

0.008915

GO:0030225

macrophage differentiation

8/673

58/21069

0.0004866

0.03037

0.02786

8

0.01189

GO:0098742

cell-cell adhesion via plasma-membrane adhesion molecules

21/673

293/21069

0.0005114

0.03147

0.02887

21

0.0312

GO:0002347

response to tumor cell

8/673

59/21069

0.0005474

0.03322

0.03047

8

0.01189

GO:0051549

positive regulation of keratinocyte migration

4/673

13/21069

0.000586

0.0346

0.03174

4

0.005944

GO:0097090

presynaptic membrane organization

4/673

13/21069

0.000586

0.0346

0.03174

4

0.005944

GO:0033209

tumor necrosis factor-mediated signaling pathway

13/673

141/21069

0.0006

0.03485

0.03197

13

0.01932

GO:0050954

sensory perception of mechanical stimulus

16/673

197/21069

0.000614

0.03485

0.03197

16

0.02377

GO:0035176

social behavior

8/673

60/21069

0.0006142

0.03485

0.03197

8

0.01189

GO:0044091

membrane biogenesis

9/673

75/21069

0.0006285

0.0352

0.0323

9

0.01337

GO:0002292

T cell differentiation involved in immune response

10/673

91/21069

0.000648

0.03584

0.03288

10

0.01486

GO:0060119

inner ear receptor cell development

7/673

47/21069

0.0006805

0.03717

0.0341

7

0.0104

GO:0001959

regulation of cytokine-mediated signaling pathway

16/673

201/21069

0.0007631

0.04055

0.0372

16

0.02377

GO:0051703

biological process involved in intraspecies interaction between organisms

8/673

62/21069

0.0007676

0.04055

0.0372

8

0.01189

GO:0002253

activation of immune response

30/673

500/21069

0.0007703

0.04055

0.0372

30

0.04458

GO:0006855

xenobiotic transmembrane transport

4/673

14/21069

0.0007997

0.04159

0.03816

4

0.005944

GO:0060117

auditory receptor cell development

5/673

24/21069

0.0008405

0.0432

0.03964

5

0.007429

GO:0016045

detection of bacterium

6/673

36/21069

0.000893

0.04517

0.04144

6

0.008915

GO:2001056

positive regulation of cysteine-type endopeptidase activity

14/673

166/21069

0.0009137

0.04517

0.04144

14

0.0208

GO:0015914

phospholipid transport

11/673

112/21069

0.0009197

0.04517

0.04144

11

0.01634

GO:0086003

cardiac muscle cell contraction

9/673

79/21069

0.0009201

0.04517

0.04144

9

0.01337

GO:0032535

regulation of cellular component size

25/673

394/21069

0.0009489

0.04606

0.04226

25

0.03715

GO:0002862

negative regulation of inflammatory response to antigenic stimulus

6/673

37/21069

0.001037

0.04981

0.0457

6

0.008915

GO:0060113

inner ear receptor cell differentiation

8/673

65/21069

0.001054

0.04994

0.04582

8

0.01189

GO:1902043

positive regulation of extrinsic apoptotic signaling pathway via death domain receptors

4/673

15/21069

0.001063

0.04994

0.04582

4

0.005944

GO:0006869

lipid transport

28/673

467/21069

0.00115

0.05323

0.04884

28

0.0416

GO:0032731

positive regulation of interleukin-1 beta production

10/673

98/21069

0.001158

0.05323

0.04884

10

0.01486

GO:0007162

negative regulation of cell adhesion

24/673

378/21069

0.001179

0.05365

0.04922

24

0.03566

GO:0002768

immune response-regulating cell surface receptor signaling pathway

28/673

470/21069

0.001265

0.05698

0.05228

28

0.0416

GO:0043367

CD4-positive, alpha-beta T cell differentiation

10/673

100/21069

0.001352

0.06026

0.05529

10

0.01486

GO:0051547

regulation of keratinocyte migration

4/673

16/21069

0.001382

0.06069

0.05569

4

0.005944

GO:0051960

regulation of nervous system development

29/673

496/21069

0.001389

0.06069

0.05569

29

0.04309

[1] “”


These plots show connections among categories:

Enrichment map. Categories are connected by genes in common. Dot size indicates number of genes, dot color indicates adjusted _p_ value.

Enrichment map. Categories are connected by genes in common. Dot size indicates number of genes, dot color indicates adjusted p value.

Gene-concept network. Categories (brown dots) are linked by genes in common (gray dots). The size of category dots indicates gene count.

Gene-concept network. Categories (brown dots) are linked by genes in common (gray dots). The size of category dots indicates gene count.

4.1.0.3 Annotation group: CC (Cellular Component)

Barplot for enriched categories. Values on top have lower p values.

Barplot for enriched categories. Values on top have lower p values.

The category with lowest p value is dystrophin-associated glycoprotein complex (0.0005246208), and the highest (among the lowest 10) is actin-based cell projection (0.009175939). The ratio is 17.49061, i.e., they differ in 1 orders of magnitude.

Click to show/hide table with 100 rows for categories with the lowest p value.

ID

Description

GeneRatio

BgRatio

pvalue

p.adjust

qvalue

Count

GeneRatioCalc

GO:0016010

dystrophin-associated glycoprotein complex

7/707

20/22283

1.698e-06

0.0005246

0.0004368

7

0.009901

GO:0005938

cell cortex

28/707

326/22283

2.049e-06

0.0005246

0.0004368

28

0.0396

GO:0090665

glycoprotein complex

7/707

25/22283

9.169e-06

0.001565

0.001303

7

0.009901

GO:1990351

transporter complex

32/707

447/22283

1.796e-05

0.001873

0.00156

32

0.04526

GO:0042383

sarcolemma

16/707

147/22283

1.829e-05

0.001873

0.00156

16

0.02263

GO:0034702

ion channel complex

25/707

323/22283

4.162e-05

0.003551

0.002957

25

0.03536

GO:1990531

phospholipid-translocating ATPase complex

5/707

14/22283

5.001e-05

0.003658

0.003046

5

0.007072

GO:0005802

trans-Golgi network

25/707

333/22283

6.825e-05

0.004368

0.003637

25

0.03536

GO:0098978

glutamatergic synapse

25/707

354/22283

0.0001786

0.009176

0.00764

25

0.03536

GO:0098858

actin-based cell projection

20/707

253/22283

0.0001792

0.009176

0.00764

20

0.02829

GO:0034703

cation channel complex

19/707

236/22283

0.0002041

0.009498

0.007909

19

0.02687

GO:0032421

stereocilium bundle

9/707

66/22283

0.0002277

0.009713

0.008088

9

0.01273

GO:0032420

stereocilium

8/707

57/22283

0.0004131

0.0146

0.01216

8

0.01132

GO:0016342

catenin complex

6/707

32/22283

0.0004471

0.0146

0.01216

6

0.008487

GO:0001772

immunological synapse

8/707

58/22283

0.000466

0.0146

0.01216

8

0.01132

GO:1902495

transmembrane transporter complex

27/707

421/22283

0.0004674

0.0146

0.01216

27

0.03819

GO:0031902

late endosome membrane

16/707

194/22283

0.0004847

0.0146

0.01216

16

0.02263

GO:0019897

extrinsic component of plasma membrane

15/707

180/22283

0.0006457

0.01837

0.01529

15

0.02122

GO:0034705

potassium channel complex

10/707

94/22283

0.0007967

0.02147

0.01788

10

0.01414

GO:0005770

late endosome

22/707

332/22283

0.0009948

0.02547

0.0212

22

0.03112

GO:0005604

basement membrane

10/707

99/22283

0.001192

0.02907

0.0242

10

0.01414

GO:0098687

chromosomal region

26/707

428/22283

0.001296

0.03016

0.02511

26

0.03678

GO:0098685

Schaffer collateral - CA1 synapse

9/707

84/22283

0.001367

0.03043

0.02534

9

0.01273

GO:0031256

leading edge membrane

15/707

196/22283

0.001533

0.0327

0.02722

15

0.02122

GO:0044304

main axon

8/707

74/22283

0.002353

0.0482

0.04013

8

0.01132

GO:0030175

filopodium

11/707

128/22283

0.00257

0.05061

0.04214

11

0.01556

GO:0098984

neuron to neuron synapse

23/707

383/22283

0.002772

0.05256

0.04376

23

0.03253

GO:0097060

synaptic membrane

24/707

408/22283

0.002959

0.0541

0.04505

24

0.03395

GO:0005828

kinetochore microtubule

4/707

20/22283

0.003246

0.0573

0.04771

4

0.005658

GO:0098791

Golgi apparatus subcompartment

27/707

484/22283

0.003501

0.05948

0.04953

27

0.03819

GO:1990752

microtubule end

5/707

33/22283

0.003601

0.05948

0.04953

5

0.007072

GO:0036157

outer dynein arm

3/707

11/22283

0.004337

0.06939

0.05778

3

0.004243

GO:0099240

intrinsic component of synaptic membrane

13/707

179/22283

0.004791

0.07433

0.06189

13

0.01839

GO:0005643

nuclear pore

9/707

102/22283

0.005152

0.07563

0.06297

9

0.01273

GO:0008076

voltage-gated potassium channel complex

8/707

84/22283

0.00517

0.07563

0.06297

8

0.01132

GO:0030673

axolemma

4/707

23/22283

0.005502

0.07825

0.06515

4

0.005658

GO:0031252

cell leading edge

25/707

457/22283

0.006172

0.08317

0.06925

25

0.03536

GO:0032589

neuron projection membrane

7/707

69/22283

0.006173

0.08317

0.06925

7

0.009901

GO:0099061

integral component of postsynaptic density membrane

6/707

53/22283

0.006459

0.08434

0.07023

6

0.008487

GO:0031253

cell projection membrane

22/707

388/22283

0.006589

0.08434

0.07023

22

0.03112

GO:0001917

photoreceptor inner segment

7/707

72/22283

0.007772

0.09507

0.07916

7

0.009901

GO:0016528

sarcoplasm

8/707

90/22283

0.007799

0.09507

0.07916

8

0.01132

GO:0099146

intrinsic component of postsynaptic density membrane

6/707

56/22283

0.008436

0.1005

0.08364

6

0.008487

GO:0000781

chromosome, telomeric region

13/707

193/22283

0.008848

0.1024

0.08522

13

0.01839

GO:0016529

sarcoplasmic reticulum

7/707

74/22283

0.008996

0.1024

0.08522

7

0.009901

GO:0032279

asymmetric synapse

20/707

357/22283

0.01052

0.1171

0.09747

20

0.02829

GO:0097730

non-motile cilium

12/707

178/22283

0.01155

0.1258

0.1048

12

0.01697

GO:0034704

calcium channel complex

7/707

78/22283

0.01186

0.1265

0.1053

7

0.009901

GO:0030016

myofibril

15/707

246/22283

0.01232

0.1287

0.1072

15

0.02122

GO:0098831

presynaptic active zone cytoplasmic component

3/707

16/22283

0.01308

0.1308

0.1089

3

0.004243

GO:0099060

integral component of postsynaptic specialization membrane

7/707

80/22283

0.01351

0.1308

0.1089

7

0.009901

GO:0042734

presynaptic membrane

11/707

161/22283

0.01389

0.1308

0.1089

11

0.01556

GO:0097731

9+0 non-motile cilium

10/707

140/22283

0.01393

0.1308

0.1089

10

0.01414

GO:0030017

sarcomere

14/707

227/22283

0.01395

0.1308

0.1089

14

0.0198

GO:0098839

postsynaptic density membrane

8/707

100/22283

0.01425

0.1308

0.1089

8

0.01132

GO:0030863

cortical cytoskeleton

9/707

120/22283

0.0143

0.1308

0.1089

9

0.01273

GO:0098688

parallel fiber to Purkinje cell synapse

3/707

17/22283

0.01552

0.1394

0.116

3

0.004243

GO:0098948

intrinsic component of postsynaptic specialization membrane

7/707

83/22283

0.01629

0.1424

0.1186

7

0.009901

GO:0099572

postsynaptic specialization

20/707

374/22283

0.0167

0.1424

0.1186

20

0.02829

GO:0032588

trans-Golgi network membrane

11/707

166/22283

0.01709

0.1424

0.1186

11

0.01556

GO:0043292

contractile fiber

15/707

256/22283

0.01712

0.1424

0.1186

15

0.02122

GO:0014069

postsynaptic density

19/707

351/22283

0.01725

0.1424

0.1186

19

0.02687

GO:0099699

integral component of synaptic membrane

11/707

168/22283

0.01851

0.1504

0.1252

11

0.01556

GO:0032587

ruffle membrane

8/707

106/22283

0.01962

0.157

0.1307

8

0.01132

GO:0001726

ruffle

12/707

194/22283

0.02135

0.1641

0.1366

12

0.01697

GO:0031965

nuclear membrane

18/707

335/22283

0.02144

0.1641

0.1366

18

0.02546

GO:0098862

cluster of actin-based cell projections

11/707

172/22283

0.02162

0.1641

0.1366

11

0.01556

GO:0098982

GABA-ergic synapse

7/707

88/22283

0.02179

0.1641

0.1366

7

0.009901

GO:0098686

hippocampal mossy fiber to CA3 synapse

4/707

35/22283

0.02414

0.1774

0.1477

4

0.005658

GO:0033276

transcription factor TFTC complex

3/707

20/22283

0.02425

0.1774

0.1477

3

0.004243

GO:0031594

neuromuscular junction

6/707

71/22283

0.02507

0.1782

0.1484

6

0.008487

GO:0035869

ciliary transition zone

6/707

71/22283

0.02507

0.1782

0.1484

6

0.008487

GO:0005790

smooth endoplasmic reticulum

4/707

36/22283

0.0265

0.1858

0.1547

4

0.005658

GO:0045211

postsynaptic membrane

16/707

296/22283

0.02759

0.1887

0.1571

16

0.02263

GO:0032426

stereocilium tip

3/707

21/22283

0.02764

0.1887

0.1571

3

0.004243

GO:0031672

A band

4/707

37/22283

0.02899

0.1953

0.1626

4

0.005658

GO:0099023

vesicle tethering complex

6/707

74/22283

0.02998

0.1993

0.166

6

0.008487

GO:0033162

melanosome membrane

3/707

22/22283

0.03127

0.2001

0.1666

3

0.004243

GO:0045009

chitosome

3/707

22/22283

0.03127

0.2001

0.1666

3

0.004243

GO:0090741

pigment granule membrane

3/707

22/22283

0.03127

0.2001

0.1666

3

0.004243

GO:0032154

cleavage furrow

5/707

56/22283

0.03206

0.2026

0.1687

5

0.007072

GO:0030018

Z disc

9/707

139/22283

0.03331

0.208

0.1732

9

0.01273

GO:0099738

cell cortex region

4/707

39/22283

0.03437

0.2116

0.1762

4

0.005658

GO:0000242

pericentriolar material

3/707

23/22283

0.03513

0.2116

0.1762

3

0.004243

GO:0035371

microtubule plus-end

3/707

23/22283

0.03513

0.2116

0.1762

3

0.004243

GO:0016459

myosin complex

5/707

58/22283

0.03655

0.2157

0.1796

5

0.007072

GO:0032153

cell division site

6/707

78/22283

0.03744

0.2157

0.1796

6

0.008487

GO:0032437

cuticular plate

2/707

10/22283

0.03821

0.2157

0.1796

2

0.002829

GO:0098981

cholinergic synapse

2/707

10/22283

0.03821

0.2157

0.1796

2

0.002829

GO:0099569

presynaptic cytoskeleton

2/707

10/22283

0.03821

0.2157

0.1796

2

0.002829

GO:0005858

axonemal dynein complex

3/707

24/22283

0.03923

0.2157

0.1796

3

0.004243

GO:0031430

M band

3/707

24/22283

0.03923

0.2157

0.1796

3

0.004243

GO:0032433

filopodium tip

3/707

24/22283

0.03923

0.2157

0.1796

3

0.004243

GO:0019898

extrinsic component of membrane

17/707

335/22283

0.03961

0.2157

0.1796

17

0.02405

GO:0033017

sarcoplasmic reticulum membrane

4/707

41/22283

0.04029

0.2171

0.1808

4

0.005658

GO:0005819

spindle

22/707

465/22283

0.04171

0.2209

0.1839

22

0.03112

GO:0031233

intrinsic component of external side of plasma membrane

3/707

25/22283

0.04356

0.2209

0.1839

3

0.004243

GO:0045171

intercellular bridge

7/707

102/22283

0.04369

0.2209

0.1839

7

0.009901

GO:0000276

mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)

2/707

11/22283

0.04573

0.2209

0.1839

2

0.002829

GO:0000815

ESCRT III complex

2/707

11/22283

0.04573

0.2209

0.1839

2

0.002829

[1] “”


These plots show connections among categories:

Enrichment map. Categories are connected by genes in common. Dot size indicates number of genes, dot color indicates adjusted _p_ value.

Enrichment map. Categories are connected by genes in common. Dot size indicates number of genes, dot color indicates adjusted p value.

Gene-concept network. Categories (brown dots) are linked by genes in common (gray dots). The size of category dots indicates gene count.

Gene-concept network. Categories (brown dots) are linked by genes in common (gray dots). The size of category dots indicates gene count.

4.2 Disease Ontology

No significant results were found in DO.

4.3 Network of Cancer Genes

Here it is a barplot of most significantly enriched NCG categories.

Barplot for enriched categories. Values on top have lower p values.

Barplot for enriched categories. Values on top have lower p values.

The most significant category was pancreatic_ductal_adenocarcinoma.